cidec (cidec)


Basic Information

Item Value
gene id cidec
gene name cidec
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 48885209 ~ 48896546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609571.2
AATTTAGCTCTAATTTATCATGTGATTAAAACAGGTGCTGCCAATAATGGCCAGGTGGATGACACTCTCCAGACAGCCGTAAGGAGATGCTTTTTGACTCAAAGAAATACCAAAAAACGCTGTTAGCTGAGGATCCAAAGGATGGATTATGCCATGAAGTCCCtcagtctcctgtcccctgccTCACTCTCCAAGTGTGTGACAGCCAGTGTATCAGCCAGTGCCTCCATGACCCAGCAGCTTCTTGTCGGGACTCCTCGACCTAAGCCCTTCCGGGTCACCAGTGCTGACCGCAGCGTTAAGAAGGGAATCATGGCTGATGGGCTACGAGACCTACTCAACAAaGCCATGGACTCTCTGCACGTGTCCTGCGTCAGTGCCGTGGTGCTGGATGAAGACGGGACGGGGGTAGATACGGAGGAGTTCTTCCTGACCCTGCAAGACAACGCTGTCCTCATGGTCCTGGAAAAGGGGCAGAAGTGGACACTTCCACAGAACACTCATCCCCGAATTCAAAATGAGCTCAAACACCAGCGCAGAAAAGATGTGGCTAGAATAACCTTTGACCTATACAAGAACAACCCTCAGGATTTCATTGGCTGTCTGAATGTGAAGGCCACGCTGTATGGAACCTACTCTGTGTCCTACGATGTGCGCTGCTACGCTGCCAAGAAGATGCTGAAGGAGGCTCTGAGATGGACCCTGTTCTCCATGCAGGCTACAGGCCATGTCCTCCTGGGCTCCTCCTGCTACATTGAGCAGCTCCTGGATGAGGATGACCGGGCAGACCTGAGCCTGACACCACTGCCACAGGATGGAAAGATCAAACAACTACAGAGCATCCTGATGGGCAAGACGGCTGTGATGGGCAAGACGGCTGTGATGGGCAAGACGGCTGTGATGGGCAAGACGGCTGTGATGGGCAAGACTGCTGTGTGATCTATCTCAATACTATGAACATGCATccttcccttctcccttcctTGAAGTAATCACCCATCTAAATCGATTTTGCAGGTGAAAGGGAATGCTATACTGCATAGCTTGCACCTGTCCAGTCATGGCTGATTTAGTAATCACTTCATGGAAAGAAATAATGGATTGTCAGGATATTCAAACAGGGCTCTGCTCAGAGAGACACTCTAAAAGAGGCTGTTTGCTAAAATTGACTGTTTGCTATAAGGAATGGGTACTGGCAAACTGCAGGACCAATACCATGGCACAGTGCTGCATCACTCTGATGTTATGGTTACAGTGGCAGGTGCACACCTTTTGGTTAGTTCACTCCTCTCGGTTGACTTTAGGGGAAGCAAAATGCTGTGTTGTCCTACATTTTGGCTATGATCACTTGCACTTTGTTACATTTGTCTGTCTATATGGTTTGCAACACTCCACAAGCGAATGCACTTTTCTATTGCAGTGACTGCTGCTGATCTGTATCTTCAACTGATAGAAGGCACTTGGCTTTTTTTCATATTAATAAGCATGAATAAATCACAAGAATATTAA
>XM_021609569.2
GCATACAGTCGACAGATTAGAACAAAGGTGAAAGAACAAGTGAtgcaagagggagagggagcaaaaAAGAGACGACAGGGAGAAATCAAGGATCCATCGATTTAGATATTGGACCTTTGTTTCATAGAGACGGGAGAGAAAGCCAAAGAAGACGCTGTTAGCTGAGGATCCAAAGGATGGATTATGCCATGAAGTCCCtcagtctcctgtcccctgccTCACTCTCCAAGTGTGTGACAGCCAGTGTATCAGCCAGTGCCTCCATGACCCAGCAGCTTCTTGTCGGGACTCCTCGACCTAAGCCCTTCCGGGTCACCAGTGCTGACCGCAGCGTTAAGAAGGGAATCATGGCTGATGGGCTACGAGACCTACTCAACAAaGCCATGGACTCTCTGCACGTGTCCTGCGTCAGTGCCGTGGTGCTGGATGAAGACGGGACGGGGGTAGATACGGAGGAGTTCTTCCTGACCCTGCAAGACAACGCTGTCCTCATGGTCCTGGAAAAGGGGCAGAAGTGGACACTTCCACAGAACACTCATCCCCGAATTCAAAATGAGCTCAAACACCAGCGCAGAAAAGATGTGGCTAGAATAACCTTTGACCTATACAAGAACAACCCTCAGGATTTCATTGGCTGTCTGAATGTGAAGGCCACGCTGTATGGAACCTACTCTGTGTCCTACGATGTGCGCTGCTACGCTGCCAAGAAGATGCTGAAGGAGGCTCTGAGATGGACCCTGTTCTCCATGCAGGCTACAGGCCATGTCCTCCTGGGCTCCTCCTGCTACATTGAGCAGCTCCTGGATGAGGATGACCGGGCAGACCTGAGCCTGACACCACTGCCACAGGATGGAAAGATCAAACAACTACAGAGCATCCTGATGGGCAAGACGGCTGTGATGGGCAAGACGGCTGTGATGGGCAAGACGGCTGTGATGGGCAAGACGGCTGTGATGGGCAAGACTGCTGTGTGATCTATCTCAATACTATGAACATGCATccttcccttctcccttcctTGAAGTAATCACCCATCTAAATCGATTTTGCAGGTGAAAGGGAATGCTATACTGCATAGCTTGCACCTGTCCAGTCATGGCTGATTTAGTAATCACTTCATGGAAAGAAATAATGGATTGTCAGGATATTCAAACAGGGCTCTGCTCAGAGAGACACTCTAAAAGAGGCTGTTTGCTAAAATTGACTGTTTGCTATAAGGAATGGGTACTGGCAAACTGCAGGACCAATACCATGGCACAGTGCTGCATCACTCTGATGTTATGGTTACAGTGGCAGGTGCACACCTTTTGGTTAGTTCACTCCTCTCGGTTGACTTTAGGGGAAGCAAAATGCTGTGTTGTCCTACATTTTGGCTATGATCACTTGCACTTTGTTACATTTGTCTGTCTATATGGTTTGCAACACTCCACAAGCGAATGCACTTTTCTATTGCAGTGACTGCTGCTGATCTGTATCTTCAACTGATAGAAGGCACTTGGCTTTTTTTCATATTAATAAGCATGAATAAATCACAAGAATATTAA
>XM_036983426.1
GCATACAGTCGACAGATTAGAACAAAGGTGAAAGAACAAGTGAtgcaagagggagagggagcaaaaAAGAGACGACAGGGAGAAATCAAGGATCCATCGATTTAGATATTGGACCTTTGTTTCATAGAGACGGGAGAGAAAGCCAAAGAAGACGCTGTTAGCTGAGGATCCAAAGGATGGATTATGCCATGAAGTCCCtcagtctcctgtcccctgccTCACTCTCCAAGTGTGTGACAGCCAGTGTATCAGCCAGTGCCTCCATGACCCAGCAGCTTCTTGTCGGGACTCCTCGACCTAAGCCCTTCCGGGTCACCAGTGCTGACCGCAGCGTTAAGAAGGGAATCATGGCTGATGGGCTACGAGACCTACTCAACAAaGCCATGGACTCTCTGCACGTGTCCTGCGTCAGTGCCGTGGTGCTGGATGAAGACGGGACGGGGGTAGATACGGAGGAGTTCTTCCTGACCCTGCAAGACAACGCTGTCCTCATGGTCCTGGAAAAGGGGCAGAAGTGGACACTTCCACAGAACACTCATCCCCGAATTCAAAATGAGCTCAAACACCAGCGCAGAAAAGATGTGGCTAGAATAACCTTTGACCTATACAAGAACAACCCTCAGGATTTCATTGGCTGTCTGAATGTGAAGGCCACGCTGTATGGAACCTACTCTGTGTCCTACGATGTGCGCTGCTACGCTGCCAAGAAGATGCTGAAGGAGGCTCTGAGATGGACCCTGTTCTCCATGCAGGCTACAGGCCATGTCCTCCTGGGCTCCTCCTGCTACATTGAGCAGCTCCTGGATGAGGATGACCGGGCAGACCTGAGCCTGACACCACTGCCACAGGATGGAAAGATCAAACAACTACAGAGCATCCTGATGGGCAAGACGGCTGTGATGGGCAAGACGGCTGTGATGGGCAAGACTGCTGTGTGATCTATCTCAATACTATGAACATGCATccttcccttctcccttcctTGAAGTAATCACCCATCTAAATCGATTTTGCAGGTGAAAGGGAATGCTATACTGCATAGCTTGCACCTGTCCAGTCATGGCTGATTTAGTAATCACTTCATGGAAAGAAATAATGGATTGTCAGGATATTCAAACAGGGCTCTGCTCAGAGAGACACTCTAAAAGAGGCTGTTTGCTAAAATTGACTGTTTGCTATAAGGAATGGGTACTGGCAAACTGCAGGACCAATACCATGGCACAGTGCTGCATCACTCTGATGTTATGGTTACAGTGGCAGGTGCACACCTTTTGGTTAGTTCACTCCTCTCGGTTGACTTTAGGGGAAGCAAAATGCTGTGTTGTCCTACATTTTGGCTATGATCACTTGCACTTTGTTACATTTGTCTGTCTATATGGTTTGCAACACTCCACAAGCGAATGCACTTTTCTATTGCAGTGACTGCTGCTGATCTGTATCTTCAACTGATAGAAGGCACTTGGCTTTTTTTCATATTAATAAGCATGAATAAATCACAAGAATATTAA

Function

symbol description
cidec Predicted to be involved in regulation of apoptotic process. Predicted to act upstream of or within apoptotic process. Human ortholog(s) of this gene implicated in familial partial lipodystrophy type 5. Orthologous to human CIDEC (cell death inducing DFFA like effector c).

NR:

description
cell death activator CIDE-3-like

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609571.2 False 1509 mRNA 0.48 6 48885209 48896546
XM_021609569.2 False 1544 mRNA 0.48 6 48887809 48896546
XM_036983426.1 True 1508 mRNA 0.48 7 48887809 48896546

Neighbor

gene id symbol gene type direction distance location
LOC110527932 LOC106582918 coding upstream 10754 48861825 ~ 48874455 (+)
LOC110527931 LOC106582916 coding upstream 39470 48835194 ~ 48845739 (+)
lsm14b LOC106582791 coding upstream 144501 48737271 ~ 48740708 (+)
LOC110527925 LOC106582912 coding upstream 171166 48470687 ~ 48714043 (+)
LOC110527924 kcnkf coding upstream 603032 48277681 ~ 48282177 (+)
LOC110527934 LOC106582919 coding downstream 106 48896652 ~ 48915101 (+)
trnaf-gaa-78 NA coding downstream 29173 48925719 ~ 48925791 (+)
LOC110527936 LOC106582920 coding downstream 55101 48951647 ~ 48960790 (+)
LOC110527938 sc61a coding downstream 78718 48975264 ~ 48987002 (+)
LOC110527940 LOC106582923 coding downstream 90597 48987143 ~ 48996632 (+)
G617130 NA non-coding upstream 60897 48824051 ~ 48824312 (+)
G617129 NA non-coding upstream 63214 48821699 ~ 48821995 (+)
G617126 NA non-coding upstream 66903 48818052 ~ 48818306 (+)
G617122 NA non-coding upstream 71921 48813019 ~ 48813288 (+)
G617119 NA non-coding upstream 73580 48811358 ~ 48811629 (+)
G617167 NA non-coding downstream 42056 48938602 ~ 48945932 (+)
G617203 NA non-coding downstream 50128 48946674 ~ 48947014 (+)
G617204 NA non-coding downstream 52231 48948777 ~ 48949069 (+)
G617214 NA non-coding downstream 74015 48970561 ~ 48970767 (+)
G617224 LOC106582921 non-coding downstream 104855 49001401 ~ 49001733 (+)
G617133 NA other upstream 57982 48826827 ~ 48827227 (+)
G615624 NA other upstream 1045487 47839388 ~ 47839722 (+)
LOC110528958 NA other upstream 2247255 46629591 ~ 46638492 (+)
G613664 NA other upstream 2605876 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 4856981 44002556 ~ 44035143 (+)
tafa4b LOC106583040 other downstream 675774 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 1406884 50303430 ~ 50304232 (+)
LOC110527970 LOC106583026 other downstream 2063948 50960494 ~ 51079129 (+)
G621650 NA other downstream 3494802 52391348 ~ 52391633 (+)
G621695 LOC106582949 other downstream 3594622 52491168 ~ 52493240 (+)

Expression


Co-expression Network