tada3l (LOC106582924)


Basic Information

Item Value
gene id tada3l
gene name LOC106582924
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49123482 ~ 49129332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609586.2
AAAATATTAGTAACAATTGAAGATAATGTAACACTCAGAAAAACGATTTACAAGTTTTCAAAATTGAACACAAATCTCTGTTCCTGAAAATTCTTACCCCCCTTCTTCCGTAGATGGTTCAGTCAATGATGGATGCCAGTCTACGGGTCAGAGACATAGCCCACTCTAACCATCAAGATGAGTGAGTTGAAGGACTGCCCGCCTCTAAAGTACTATGACTTTAAGCCAGTAGAGCATGTCAAGGTATGCCCCCGCTACACTGCCGTGCTCGGGCGCTCAGAGGACGATGGCATCGGTATTGAGGAGCTGGACACACTGCAGCTGGAGCTGGagactctcctgtcctctgctagcCGCCGTCTCAGAGCTCTGGAAGAACAGAGGCAGATTCTCACAGACTGGCAGGATAAGAAAGGGGACAAGCGCTTTCTGAAGCTGGGAAAAGACGCAGACCTCTCAGCCTCATCACGTCACAAACCGAAGAAGCAGAAACTCGATGGAAAGGGCAGTCACGGGCCTGGGCCTGGTCCTGGACGACCTAAATCCAAAAATCTGCAGCCCAAAGTCCAGGAGTACGAGTTAAGTGAGGATCCACAGGACATTCCCCGTAATCCTAAGAATGATGCCCCCAACAGATTTTGGGCATCAGTAGAGCCATACTGTGCTGACATCACAAATGAAGAAATCCGGGTTCTGGAAGAACTCCTGAAGCCCCCGGATGATGAGGCTGAATACTACAAGATTCCGGCATTGGGGAAACACTACTCTCAGCGATGGGCTCAGGAGGATCTGCTGGAGGAACAGCGGGAAGGGGCTCGAGCCAACGACAAGAAGAAAAGCCTCATGGGACCACTGTCTGAATTAGATGCCAAAGATGTGGATGCCCTGTTAAAAAAGTCTGAGTCCCAGCACGACCCACCAGatgatggttgtccttttggtcCTCTTACACAGCGGCTCCTTCAGGCTCTTGTCGAGGAGAATATCATATCACCCATGGAGGATTCTCCAATCCCTGACATATccgggaaggatggagggaacgAGGGGGCTGGGACCTCACCTCGCAGCCAGGGCAAAGCTTTTAGTGTTCCTCACACGCGCTCTCTCGAGGCACGGATTAAGGAGGAGCTGATGTCTCAGGGGCTGCTGGATTCTGAGGAGCGACCCGGAGCAGGCGGAGACTCCGAGGATGAGGTGCTCGCTGAGCTCCACAAGAGACAGGCTGAACTCAAAGCCCTGAGTGCCCACAACAGATCCCGTAAGCAGGAGTTACTCCGCCTGGCAAAGGAGGAGATGCGGAAGCAGGAGTTGCGGCAGAGGGTCCGGGTGTCTGATAATGAGGTCATGGAGGGCTTCCGTCGCATTATGGCTGCCAGGCAGAAGAAACGCACACCGACAAAGAAGGAGAAGGATCAGGCATGGAAAGCACTGAAGGAAAGAGACAGCATCCTCAAGCTGCTGGATGGGTAGAGGGGCAATCATTTAGGGTGGGTGTGGGGTAGTTTCATTCTGCCAATGAGTATATActgttgtatatgtgtgtgtgtgtgtgtgtgtgtctggtcatATGCTTCCATGCTCTAGTGGCCATAAGCATTTTATCACGTTTTCTTACTCTATATAACTATCCAATGGAAGTACAGTGAATACCTGCAATGATGTAGCATGATTGTCATAGTTGTTGAAAATGGAGGCATGCATTTTTTGATAATTTGTGTATTCTTGTATGAGTATGTTAACTAAACCTTCGGTGCACTGTATTCACTGTTTGACCATCCTCACCAGAGGAGCTTATGATGATTTCATGTGGTTCTCTGTGTGCATTACTGGCATTTGTTTTCTGAGACTAACTAGTATTGTTTTCCACTGGCATTTTCCAAGTTCTATTGTTGAttttgtttacattttatttaacgtTTATAGTGTATCTCTAGTATGGAGAAACTAAAACGTAATGTGTGAAAAAATAAATATCAGGAAAAGGGTTGTGAGGGAATATCAA
>XM_036983430.1
gacaaacaGCTCATTGAGGgctgcttcttcttctttaaAGTGTTATGTCAAACTACACCTATTGGTGtattgccgccacctactgtttTGGCTGTATATCAGCCCAAATAATTAACCAAAAAAACtgaacaaaataaacaaaacacaATGTACACCTTTATTCAGATTCAACTGCCAAAGCCCAACCCTATAGGCTCTGGGGCCTGGGAAGGAAGAGCATAGTTGGACAGTATTTTTTGCAATGTTTCGGCAGTGAAATCCTGGAACCCCAAAACCTTTCAGCCGCAGTTTCTTGGACTTTTTCATTTATGCAGTGCAATTAATCAAATGCCCGATAAACACCATACCTGCTAAAAGCTGCTCAACCTTCTTCACAATTAGCATATCAGTTTCCCTCAACTGTTGAACAGCACTGAATCTCCACAGTCTGCGGAGTATCCACCGCTATATCTTCAGCTCCCTTCGCTCCTTCAACTATTTCACGTGCTTCCGTGTAGGAGACCTGCTGAATAGCCCTGACCCTTGCCACTTCATACTCCTTTACCCTAACCAGGCACTCCGGGGAATTTGGAAGATGGTTGCCATCACAATAACATTGTACACTCTCAGATTCTTCAACAACATTCCTTCGACACACACTTGATACATGTCCATACCTTTCGCAATTCCGGCAAAACACCAGCTTGGACACAAGCTCTCACCGTATATCTAACATATACCATCTTCACATTTGAAGGGAGATACTCTTCCTCAAACACTAATAATACTGAAAGGCTTTCTTCTTTAATCCCCATCCACTGCATGGTTCAGCCGGTGTGTTCCAACTACTCCTGGTATGCTCCTCGTAAACCACAAGGCCTCCACATCCAATACGACGCCAGAGATGACAACTTTTAAAGGTACTCTGCTACAAAAATCAAAACTCTCTACTTCATAAGTCAATAGTTTGTCGATCCTTAATgccctttccttctcttctttcgaCACACAAGAAATCAAAACAAAACCACTTCTGGTCCCTCTGATCAACTCCACCTTTCCCAATGCATCCCTTACCATCATTGATACTTCAAACGGATCCCACAAAAAGCATAATTGTTAGTGAACCCTACTCCAACCAAAAACCTATACTCATGAACAACTTTAgcccttttttgtttgtttcctttATCACGGTCTTTCACTCTTTAGCCAAACTGCAAGTATCCACTCTCCACCAATCTCACTCCCACTGGACCAGAATCATCCTTTACATCTTTGGAACGAGGCCCGAACTCAGCAGTCTCCACCACGGATTTTGGGCATCAGTAGAGCCATACTGTGCTGACATCACAAATGAAGAAATCCGGGTTCTGGAAGAACTCCTGAAGCCCCCGGATGATGAGGCTGAATACTACAAGATTCCGGCATTGGGGAAACACTACTCTCAGCGATGGGCTCAGGAGGATCTGCTGGAGGAACAGCGGGAAGGGGCTCGAGCCAACGACAAGAAGAAAAGCCTCATGGGACCACTGTCTGAATTAGATGCCAAAGATGTGGATGCCCTGTTAAAAAAGTCTGAGTCCCAGCACGACCCACCAGatgatggttgtccttttggtcCTCTTACACAGCGGCTCCTTCAGGCTCTTGTCGAGGAGAATATCATATCACCCATGGAGGATTCTCCAATCCCTGACATATccgggaaggatggagggaacgAGGGGGCTGGGACCTCACCTCGCAGCCAGGGCAAAGCTTTTAGTGTTCCTCACACGCGCTCTCTCGAGGCACGGATTAAGGAGGAGCTGATGTCTCAGGGGCTGCTGGATTCTGAGGAGCGACCCGGAGCAGGCGGAGACTCCGAGGATGAGGTGCTCGCTGAGCTCCACAAGAGACAGGCTGAACTCAAAGCCCTGAGTGCCCACAACAGATCCCGTAAGCAGGAGTTACTCCGCCTGGCAAAGGAGGAGATGCGGAAGCAGGAGTTGCGGCAGAGGGTCCGGGTGTCTGATAATGAGGTCATGGAGGGCTTCCGTCGCATTATGGCTGCCAGGCAGAAGAAACGCACACCGACAAAGAAGGAGAAGGATCAGGCATGGAAAGCACTGAAGGAAAGAGACAGCATCCTCAAGCTGCTGGATGGGTAGAGGGGCAATCATTTAGGGTGGGTGTGGGGTAGTTTCATTCTGCCAATGAGTATATActgttgtatatgtgtgtgtgtgtgtgtgtgtgtctggtcatATGCTTCCATGCTCTAGTGGCCATAAGCATTTTATCACGTTTTCTTACTCTATATAACTATCCAATGGAAGTACAGTGAATACCTGCAATGATGTAGCATGATTGTCATAGTTGTTGAAAATGGAGGCATGCATTTTTTGATAATTTGTGTATTCTTGTATGAGTATGTTAACTAAACCTTCGGTGCACTGTATTCACTGTTTGACCATCCTCACCAGAGGAGCTTATGATGATTTCATGTGGTTCTCTGTGTGCATTACTGGCATTTGTTTTCTGAGACTAACTAGTATTGTTTTCCACTGGCATTTTCCAAGTTCTATTGTTGAttttgtttacattttatttaacgtTTATAGTGTATCTCTAGTATGGAGAAACTAAAACGTAATGTGTGAAAAAATAAATATCAGGAAAAGGGTTGTGAGGGAATATCAA

Function

NR:

description
transcriptional adapter 3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609586.2 False 2005 mRNA 0.48 9 49123482 49129332
XM_036983430.1 True 2664 mRNA 0.45 7 49124967 49129332

Neighbor

gene id symbol gene type direction distance location
LOC110527942 f264 coding upstream 16113 49078148 ~ 49107369 (+)
LOC110527941 mapk3 coding upstream 52987 49050765 ~ 49070495 (+)
LOC110527940 LOC106582923 coding upstream 126850 48987143 ~ 48996632 (+)
LOC110527938 sc61a coding upstream 136480 48975264 ~ 48987002 (+)
LOC110527936 LOC106582920 coding upstream 162692 48951647 ~ 48960790 (+)
hmces hmces coding downstream 747 49130079 ~ 49135752 (+)
LOC110527949 LOC106582927 coding downstream 19290 49148622 ~ 49153573 (+)
LOC110527950 LOC106582928 coding downstream 37671 49167003 ~ 49186969 (+)
trnae-cuc-4 NA coding downstream 169174 49297929 ~ 49301234 (+)
trnae-cuc-5 NA coding downstream 176171 49305503 ~ 49305574 (+)
G617286 NA non-coding upstream 2463 49120728 ~ 49121019 (+)
G617284 NA non-coding upstream 5116 49118148 ~ 49118366 (+)
G617227 NA non-coding upstream 118676 49004217 ~ 49004806 (+)
G617225 LOC106582921 non-coding upstream 121179 49001835 ~ 49002303 (+)
G617224 LOC106582921 non-coding upstream 121749 49001401 ~ 49001733 (+)
G617293 NA non-coding downstream 27762 49157094 ~ 49157345 (+)
G617304 NA non-coding downstream 54190 49183522 ~ 49183749 (+)
G617305 NA non-coding downstream 54518 49183850 ~ 49184089 (+)
G617315 NA non-coding downstream 106649 49235981 ~ 49271638 (+)
G617133 NA other upstream 296255 48826827 ~ 48827227 (+)
G615624 NA other upstream 1283760 47839388 ~ 47839722 (+)
LOC110528958 NA other upstream 2485528 46629591 ~ 46638492 (+)
G613664 NA other upstream 2844149 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 5095254 44002556 ~ 44035143 (+)
tafa4b LOC106583040 other downstream 442988 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 1174098 50303430 ~ 50304232 (+)
LOC110527970 LOC106583026 other downstream 1831162 50960494 ~ 51079129 (+)
G621650 NA other downstream 3262016 52391348 ~ 52391633 (+)
G621695 LOC106582949 other downstream 3361836 52491168 ~ 52493240 (+)

Expression


Co-expression Network