LOC110527949 (LOC106582927)


Basic Information

Item Value
gene id LOC110527949
gene name LOC106582927
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49148622 ~ 49153573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609590.2
TCGGAACAGCATGACGTCAGTACGTGAGGACTGAATGAAACGTCATCCTTAAGGCTGCAGCTTTGGTCCTGAAGTGGTGCGTGGCCTTTCTTCCTCTCTAGCTTCAACTTAACAATTAAGCAAATTATCTTTAAGTTTAATTTCATAACCATGGCGCGAAACATCCCCTTCTTCGCCGCACCCATTTATCTGCTCCTTATCACTGTACTGTGTTATCGAGTGGCTGCGGACGGGCTGGTGAACGAGGAGGTGAAACGAACGGTGGACCTGAGCACGCACCTTGCTAAGATAACAGCAGAGATTCTTCTGTCAAATCAGGGAGACTCGGCGGTACATAACTTTATCTTGGCGGTAGAGCCCGACCTGGCCCCCCACCTAGCTTATGTCGGTGCATCGGTGAAgggtgatgaagaggaggatgccATGCTTGAGCTCAAGCAAACAACAATCCAAGGTCAAAGTGGGGAGTTTTACAAGGTGCAGTTACCCTCCAGTCTGGGTGTGGGTGCTAAGCTGCGGGTGAAGGTGGAGACTGTCCTGAGCCACATCTTGAGGCCCTTCCCCACCCACATCACCCAGGCTGAGCGTCAGCTGGTGGTGTTCCAGGGTAACCACTACCTGTACTCCCCCTACCCCACCCGCAGCCAGACCACCCGCGTCCGCCTCGCCTCTAAGACTGTGGAGAGCTACACCAAGCTGGGCAACCCCAGCAAGAGCGATGAAGCTATTGAGTATGGCCCCTTCCGTGATGTCGCCCCTTTCAGCGAGGATGCCATGAAGGTCCATTATGAGAACAACACACCCTTCCTCACCATTAGCAGCATCACCCGCATCATCGAAGTCTCCCATTGGGGAAACATTGCTGTGGAAGAGACCATTGACATGAGGCACACAGGTGCATTCCTGAAAGGGCCTTTCTCCCGTTATGACTACCAGCGTCAGTCTGACAGTGGCATCTCATCAGTTAAATCCTTTAAGACCATCCTTCCTGCATCAGCCCAGGATGTGTACTACCGGGATGAGATCGGCAACATATCCACCTCCCACCTACAGATTCTGGAAGAatctgtggaggtggaggttcgGCCCCGCTTCCCTCTGTTTGGTGGCTGGAAGACCCACTACATTATCGGCTACAATCTGCCCAGCTATGAGTACCTCTACACTCTGGGGGATCAGTATGCTCTGAAGATGAGGCTGGTTGACCATGTATATGATGACCAAGTCATCGACTCCCTCACTGTTAAACTCATACTGCCAGAAGGCGCCAGGAACATCCATGTGGAAACCCCCTACCCCATTGACCGCATTCCAGACCAGCTGCACTACACCTACCTGGACACCTTTGGTCGTCCTGTGCTGGTGGCTTCTAAGAACAATCTGGTGGAGCAGCACATCCAGGATATAGTGGTGCATTATACCTTCAATAAGATCCTGATGCTGCAGGAGCCTTTATTGGTGGTGGGGGCCTTCTACATCCTCTTCTTCACAGTCATCATCTACGTGCGCCTGGACTTCTCCATCACTAAGGACCCTGCTGCAGAGGTTCGTATGAAGGTGGCCTCCATCACAGAGCAGGTCCTGACTCTGGTCAACAAGCGTTTAGGTCTGTACCGCCACATGGACGAGGTGGTTAATCGCTATAAGCAATCCCGAGACACGGGGGCCCTGAACAGCGGCCGCAAGACCCTGGAGGCCGACCACCGCACCCTCACCAACGACATCAGCTCCCTGCAGGCCCGCCTCAAAACAGAGGGCTCCGACCTCGCAGATAAGGTGGGTGAGGTGCAGAAGCTGGACGGCCAGGTGAAGGACCTGGTGGGTCGCTCCTGTCAAGAGGCTGAGCGCCTGGTGGCAGGCAAGGTGAAGAAGGAGGCCTACATCGACAACGAGAAGACCCTAGCTAGCAAGAGACTGGAGCTGGTGACGCGCATCGACAGTCTGCTGGACACCCTGTAAACGCCACAATACACACATGATGGTGTGCAGTATACACAcatgctatacacacacacacacataaacacacgtgCTGCCCCAGCTACACGTCTGTTGAACCGCTCTTGCACTCATTTATAATAAGGAACATCGACATTTTCACTCTCAAAGCTCAATGTCCATCCTCTGAGACTCAGACACGAAATAAACACACTCGCGCAAAGTAACCTGTAGGTGCATACAAACACTCGTGCCTTTGTGCCCCGCTAAAAACATGACGGCATTATGCTTAACACCACAGTGAGTGCTTGCGTCACACCTTATGTGGAAGAGTCTAGTGTGAGTTAAATTGCGCGGAAGAGTGTTGCTCAGAGTAAATGCAGCATTTTCATGTTTAAATTTGGAATCCTCTTGTATTGTTTAGTTTTCACCcttttgtatgatttttttggaGATGAACAATAAATTGTTTTACTATGGATAGTCAAGTTACTCTGTAAGGGTTGTCTCATACATGTCTCATCTGTCCCATGTCTATACTCCCATGAGCCCTTCCAACCTGTGTGCTCCTCTAAAGGGGAAGTAGTCATCATTGCCGGGGTCCATGTGAGTCAAACAATCTCTCATTGTCTTTGTCGTATTCTTTGCATTTACAAACCACAATTGCTCCTTCCCCCTGGCCATTACATGTTGTATATTTGAACAATGTTGAAGCTCTGAAACCGTGTGGAGCCCAATTCAAAGGGTTACCTTTACCGTTATCTTTATGTTAAGTTTCTAATTCTTCCTCTGTAAAATTTCTAACATTTGTATGATTTCTTGTTTTGTAATGGTATGTTTTCTTTGATTAGTAAATGCATGACAGGCCATGTGTGTGGGGAAGAGTATGTGCCAATCGAAGACATTGGTTGATAACGTAAGTAAACCTGTACCAGTAGTAAATTAAATGGGGAAAAATAACCAAATTTGAAATAAATCTGGGAAAAAATacaaa

Function

NR:

description
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like

GO: NA

KEGG:

id description
K12666 OST1, RPN1; oligosaccharyltransferase complex subunit alpha (ribophorin I)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609590.2 True 2932 mRNA 0.49 10 49148622 49153573

Neighbor

gene id symbol gene type direction distance location
hmces hmces coding upstream 12870 49130079 ~ 49135752 (+)
tada3l LOC106582924 coding upstream 19290 49123482 ~ 49129332 (+)
LOC110527942 f264 coding upstream 41253 49078148 ~ 49107369 (+)
LOC110527941 mapk3 coding upstream 78127 49050765 ~ 49070495 (+)
LOC110527940 LOC106582923 coding upstream 151990 48987143 ~ 48996632 (+)
LOC110527950 LOC106582928 coding downstream 13430 49167003 ~ 49186969 (+)
trnae-cuc-4 NA coding downstream 144933 49297929 ~ 49301234 (+)
trnae-cuc-5 NA coding downstream 151930 49305503 ~ 49305574 (+)
LOC110527119 NA coding downstream 230729 49384302 ~ 49386132 (+)
LOC110527957 uba3 coding downstream 319953 49473526 ~ 49487883 (+)
G617286 NA non-coding upstream 27603 49120728 ~ 49121019 (+)
G617284 NA non-coding upstream 30256 49118148 ~ 49118366 (+)
G617227 NA non-coding upstream 143816 49004217 ~ 49004806 (+)
G617225 LOC106582921 non-coding upstream 146319 49001835 ~ 49002303 (+)
G617224 LOC106582921 non-coding upstream 146889 49001401 ~ 49001733 (+)
G617293 NA non-coding downstream 3521 49157094 ~ 49157345 (+)
G617304 NA non-coding downstream 29949 49183522 ~ 49183749 (+)
G617305 NA non-coding downstream 30277 49183850 ~ 49184089 (+)
G617315 NA non-coding downstream 82408 49235981 ~ 49271638 (+)
G617133 NA other upstream 321395 48826827 ~ 48827227 (+)
G615624 NA other upstream 1308900 47839388 ~ 47839722 (+)
LOC110528958 NA other upstream 2510668 46629591 ~ 46638492 (+)
G613664 NA other upstream 2869289 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 5120394 44002556 ~ 44035143 (+)
tafa4b LOC106583040 other downstream 418747 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 1149857 50303430 ~ 50304232 (+)
LOC110527970 LOC106583026 other downstream 1806921 50960494 ~ 51079129 (+)
G621650 NA other downstream 3237775 52391348 ~ 52391633 (+)
G621695 LOC106582949 other downstream 3337595 52491168 ~ 52493240 (+)

Expression


Co-expression Network