trnae-cuc-4


Basic Information

Item Value
gene id trnae-cuc-4
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49297929 ~ 49301234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnae-cuc-4
tccctggtggtctagtggttaggattcggcgctctcaccgccgcggcccgggttcgattcccggtcagggaa
>TU702489
CCTGAGGTCAAAAGTACTTTTCTGAATTGATTACCTAAAAGGTGTAGAGATTTTGCAGACAACACTTGGTCATACAACTTCGACTGGACTCCGAGAGGAGGCAAGACCATACATATCACAGGGAGACTAGTGAGTCAACCTTTCTGTTTGGGAGAAAAGCCAACGCTTGCCTGTCAAcatgcagtgcagtgcagtcaAATGGCAAGCGAGTCAGGACAGAATGCAAAAAGTGTTTGAGCGCCAGGCTTGTGTGTCAATAATAGTTTGAGTCATTTTAAATGCTAGAAAAGTCTGTGTGTAGTGAGGGGTCTATTTGTGGGTACTGAGACATTACTCTCGGAGTCAGTCTACTCTATGGGAAGAAATAGGTCCTCACTCAGTGGTGTACGTCTCTCTGCACCTGTTACTGTTTACTGAGGGCCCACTGTCACTGTGAAAATGTGTACCCTGTTGGCAGTCTAGAGTTTTATGAAGACCTATGATCTCAGAGACTCCTTCCCCTGTCTTATAACTCTCATTGTCCACCCCCTCCATTCCAAGAGACTTATTACTACAAATCATTCTATGCTCTGGCAgctccctggtggtctagtggttaggattcggcgctctcaccgccgcggcccgggttcgattcccggtcagggaacacATGTTTTTTTAAACCCTACAGAAAGCGCTCTCTGTTCAGAGAAAATCtgttatttcagtgttttacAAACTTTATTGTAAAATCATTTTTAATGGTAATGTAAGTCGATCCTTTGCCAGTCATTTTAGTTTTTACAATAAAATCCCTCTGTTGAACGGAGGACAACCTGCACCACCGTTTACCAAACCCCACAGTCAGTTATTCCTTTGCCTCAGCCAACATCCTACTCAAACAGTTCATTATCACCACATTTACTGTATCACCACTCCTTAAGACAGACACTCTGTGTTGTGTTCCTGGTCACCTAAAGCGAGACCGATTCAACACCTAGACCTGAGGAAGGGGGGACGACAAAGTCAAGACCAGAAAAATGcgagtccaattcaagaccatgaATGTTATTGTCAAATCACCACCATAGGAGTTaaaaatgtccagtatttctgtgttcatatttcagaataACATATGGATATTTTAGATATTCATAATAGTGAATAAATGCATGCTGAGGGCAAATAGAGCCACTCTACAAGTTATTACTAACCCAAACACACTGGGGAACAATGGGCTAAGGAAAGGGCTTaggatttataaaataattaTAAATTATACTATTTTAAAATGATGTTCTGATTTAATCATCAGTTTTTGTTGGATGGAAAGGGTTAACAGTTTACAGGGCTGCAGCAGGTGTTATCAAAGaggatgttgttgctaatttgttagcttctCCCATTTAAAGAATAACTTTCAACAAGAAGTTTCAAATGATCATCATCTGGTGAGTGGAACTTTTCTATTGCAGCGTGCTTGCTGTTagccatcaatcaatcaaatgtatttataacgcccttttttacatcagcagatgtcacaaagtgctgtacactaactcagcctaaaaccccaaaacgcaagcaatgcagatgtagaaagaAGTACGGAAATAACTTATTTGTGTGGAACACTGCTGCATTCAAAGTGGAACTGACCGCATTTTTTCAACAtgaaatctgttcatatacacccccaggaagaatgacACTTTAAAAAATTATTCTGACAAGTGACAaattagatatggtcattttcatgGTTTCCtaaattcttagaatgtttggaATGAAGTATTCTAAAGGATTTGTGAAAATAGAGAGTGGGAAAGCGGCCGAGCGTTTGggcaattaatagacactgctgtacaaaaaaaaaaacgaataaaaACCATTGGTCTTGTCCAGGACCGGAGACGACACGGAACGGACCGCTATAGCTAATCAGAGCTATAGTAGACCTTCATACAAACAAGTAATTTGAAACACGTGCCTGcaatcattcactttgaactggactgtgtgtttacaggctgTTGCAACAGCGCGACTTTAAATCATTATTACGCATTCGCCAaaaaccacaaaaaaaaacacacctgACTGGATTTCAGCAAAATGTcaacaccagcctaatctcgggagttgataggattgaagtcaaacagctcaatgcttgaagcacagcgacgagctgctggcaaaatgcacaaaagtgctgtttgactgaatgcttacaagcctgctggtgcctaccaccactcagtcagactgctatatcaaatcatagacttaattataacattataacacacagaaatacgagtcttacgtcattaatatggtcgaatccggaaactatcatctcgaaaacaagacgtttattattacagtgaaatacggaaccgttccgtattttatctaacgggtggcatccataaatctaaatattcctgttaacattgaaggttgtgcaatgtatgtcataattacgtacaattctggcaaaagggcggcccaaactgttgcatatacactgactctgcgtgcaatgaacgcaagagaagtgacaatttcacctagttaatattgcctgctaacctggattttttgtgtgcaaaatatgcaggtttaaaaatacactgctcaaaaaaataaagggaacactaaaataacacatcctagatctgaatgaatgaaatattcttattaagtacttttttctttacatagttgaatgtgctgacaacaaaatcacacaaaaattatcaatggaaatcaaatttatcaactcatggaggtctggatttggagtcacactccaaattaaagtggaaaaccacactacaggctgatccaactttgatgtaatgtcctaaagcaagtcaaaatgaggctcagtagtgtgtgtggcctccacgtgcctgtgtgacctccctacaacgcacgggcatgctcctgatgaggtggcggatagtctcttgagggatctcctcccagacctggactaaagcatccgccaactcctggacagtctgtggtgcaacgtggcattggtggatggagcgagacatgatgtcccagatgtgctcaattggattctggtctggggaacgggcgggccagtccatagcatcaaggtcatgctggaggatgttgcaggcagcagaacgttctccactgcgtctccagactctgtcacatgtgctcggtgtgaacctgctttcatctgtgaagagcacagggcgccagtggcgaatttgccaatcttggtgttctctggcaaatgaaaaacgtcctgcacggtcttgggctgta
>TU702482
CTCTGTTCAGAGAAAATCtgttatttcagtgttttacAAACTTTATTGTAAAATCATTTTTAATGGTAATGTAAGTCGATCCTTTGCCAGTCATTTTAGTTTTTACAATAAAATCCCTCTGTTGAACGGAGGACAACCTGCACCACCGTTTACCAAACCCCACAGTCAGTTATTCCTTTGCCTCAGCCAACATCCTACTCAAACAGTTCATTATCACCACATTTACTGTATCACCACTCCTTAAGACAGACACTCTGTGTTGTGTTCCTGGTCACCTAAAGCGAGACCGATTCAACACCTAGACCTGAGGAAGGGGGGACGACAAAGTCAAGACCAGAAAAATGcgagtccaattcaagaccatgaATGTTATTGTCAAATCACCACCATAGGAGTTaaaaatgtccagtatttctgtgttcatatttcagaataACATATGGATATTTTAGATATTCATAATAGTGAATAAATGCATGCTGAGGGCAAATAGAGCCACTCTACAAGTTATTACTAACCCAAACACACTGGGGAACAATGGGCTAAGGAAAGGGCTTaggatttataaaataattaTAAATTATACTATTTTAAAATGATGTTCTGATTTAATCATCAGTTTTTGTTGGATGGAAAGGGTTAACAGTTTACAGGGCTGCAGCAGGTGTTATCAAAGaggatgttgttgctaatttgttagcttctCCCATTTAAAGAATAACTTTCAACAAGAAGTTTCAAATGATCATCATCTGGTGAGTGGAACTTTTCTATTGCAGCGTGCTTGCTGTTagccatcaatcaatcaaatgtatttataacgcccttttttacatcagcagatgtcacaaagtgctgtacactaactcagcctaaaaccccaaaacgcaagcaatgcagatgtagaaagaAGTACGGAAATAACTTATTTGTGTGGAACACTGCTGCATTCAAAGTGGAACTGACCGCATTTTTTCAACAtgaaatctgttcatatacacccccaggaagaatgacACTTTAAAAAATTATTCTGACAAGTGACAaattagatatggtcattttcatgGTTTCCtaaattcttagaatgtttggaATGAAGTATTCTAAAGGATTTGTGAAAATAGAGAGTGGGAAAGCGGCCGAGCGTTTGggcaattaatagacactgctgtacaaaaaaaaaaacgaataaaaACCATTGGTCTTGTCCAGGACCGGAGACGACACGGAACGGACCGCTATAGCTAATCAGAGCTATAGTAGACCTTCATACAAACAAGTAATTTGAAACACGTGCCTGcaatcattcactttgaactggactgtgtgtttacaggctgTTGCAACAGCGCGACTTTAAATCATTATTACGCATTCGCCAaaaaccacaaaaaaaaacacacctgACTGGATTTCAGCAAAATGTcaacaccagcctaatctcgggagttgataggattgaagtcaaacagctcaatgcttgaagcacagcgacgagctgctggcaaaatgcacaaaagtgctgtttgactgaatgcttacaagcctgctggtgcctaccaccactcagtcagactgctatatcaaatcatagacttaattataacattataacacacagaaatacgagtcttacgtcattaatatggtcgaatccggaaactatcatctcgaaaacaagacgtttattattacagtgaaatacggaaccgttccgtattttatctaacgggtggcatccataaatctaaatattcctgttaacattgaaggttgtgcaatgtatgtcataattacgtacaattctggcaaaagggcggcccaaactgttgcatatacactgactctgcgtgcaatgaacgcaagagaagtgacaatttcacctagttaatattgcctgctaacctggattttttgtgtgcaaaatatgcaggtttaaaaatacactgctcaaaaaaataaagggaacactaaaataacacatcctagatct
>TU702484
CTCTGTTCAGAGAAAATCtgttatttcagtgttttacAAACTTTATTGTAAAATCATTTTTAATGGTAATGTAAGTCGATCCTTTGCCAGTCATTTTAGTTTTTACAATAAAATCCCTCTGTTGAACGGAGGACAACCTGCACCACCGTTTACCAAACCCCACAGTCAGTTATTCCTTTGCCTCAGCCAACATCCTACTCAAACAGTTCATTATCACCACATTTACTGTATCACCACTCCTTAAGACAGACACTCTGTGTTGTGTTCCTGGTCACCTAAAGCGAGACCGATTCAACACCTAGACCTGAGGAAGGGGGGACGACAAAGTCAAGACCAGAAAAATGcgagtccaattcaagaccatgaATGTTATTGTCAAATCACCACCATAGGAGTTaaaaatgtccagtatttctgtgttcatatttcagaataACATATGGATATTTTAGATATTCATAATAGTGAATAAATGCATGCTGAGGGCAAATAGAGCCACTCTACAAGTTATTACTAACCCAAACACACTGGGGAACAATGGGCTAAGGAAAGGGCTTaggatttataaaataattaTAAATTATACTATTTTAAAATGATGTTCTGATTTAATCATCAGTTTTTGTTGGATGGAAAGGGTTAACAGTTTACAGGGCTGCAGCAGGTGTTATCAAAGaggatgttgttgctaatttgttagcttctCCCATTTAAAGAATAACTTTCAACAAGAAGTTTCAAATGATCATCATCTGGTGAGTGGAACTTTTCTATTGCAGCGTGCTTGCTGTTagccatcaatcaatcaaatgtatttataacgcccttttttacatcagcagatgtcacaaagtgctgtacactaactcagcctaaaaccccaaaacgcaagcaatgcagatgtagaaagaAGTACGGAAATAACTTATTTGTGTGGAACACTGCTGCATTCAAAGTGGAACTGACCGCATTTTTTCAACAtgaaatctgttcatatacacccccaggaagaatgacACTTTAAAAAATTATTCTGACAAGTGACAaattagatatggtcattttcatgGTTTCCtaaattcttagaatgtttggaATGAAGTATTCTAAAGGATTTGTGAAAATAGAGAGTGGGAAAGCGGCCGAGCGTTTGggcaattaatagacactgctgtacaaaaaaaaaaacgaataaaaACCATTGGTCTTGTCCAGGACCGGAGACGACACGGAACGGACCGCTATAGCTAATCAGAGCTATAGTAGACCTTCATACAAACAAGTAATTTGAAACACGTGCCTGcaatcattcactttgaactggactgtgtgtttacaggctgTTGCAACAGCGCGACTTTAAATCATTATTACGCATTCGCCAaaaaccacaaaaaaaaacacacctgACTGGATTTCAGCAAAATGTcaacaccagcctaatctcgggagttgataggattgaagtcaaacagctcaatgcttgaagcacagcgacgagctgctggcaaaatgcacaaaagtgctgtttgactgaatgcttacaagcctgctggtgcctaccaccactcagtcagactgctatatcaaatcatagacttaattataacattataacacacagaaatacgagtcttacgtcattaatatggtcgaatccggaaactatcatctcgaaaacaagacgtttattattacagtgaaatacggaaccgttccgtattttatctaacgggtggcatccataaatctaaatattcctgttaacattgaaggttgtgcaatgtatgtcataattacgtacaattctggcaaaagggcggcccaaactgttgcatatacactgactctgcgtgcaatgaacgcaagagaagtgacaatttcacctagttaatattgcctgctaacctggattttttgtgtgcaaaatatgcaggtttaaaaatacactgctcaaaaaaataaagggaacactaaaataacacatcctagatctgaatgaatgaaatattcttattaagtacttttttctttacatagttgaatgtgctgacaacaaaatcacacaaaaattatcaatggaaatcaaatttatcaactcatggaggtctggatttggagtcacactccaaattaaagtggaaaaccacactacaggctgatccaactttgatgtaatgtcctaaagcaagtcaaaatgaggctcagtagtgtgtgtggcctccacgtgcctgtgtgacctccctacaacgcacgggcatgctcctgatgaggtggcggatagtctcttgagggatctcctcccagacctggactaaagcatccgccaactcctggacagtctgtggtgcaacgtggcattggtggatggagcgagacatgatgtcccagatgtgctcaattggattctggtctggggaacgggcgggccagtccatagcatcaaggtcatgctggaggatgttgcaggcagcagaacgttctccactgcgtctccagactctgtcacatgtgctcggtgtgaacctgctttcatctgtgaagagcacagggcgccagtggcgaatttgccaatcttggtgttctctggcaaatgaaaaacgtcctgcacggtcttgggctgta
>TU702477
AGTCGATCCTTTGCCAGTCATTTTAGTTTTTACAATAAAATCCCTCTGTTGAACGGAGGACAACCTGCACCACCGTTTACCAAACCCCACAGTCAGTTATTCCTTTGCCTCAGCCAACATCCTACTCAAACAGTTCATTATCACCACATTTACTGTATCACCACTCCTTAAGACAGACACTCTGTGTTGTGTTCCTGGTCACCTAAAGCGAGACCGATTCAACACCTAGACCTGAGGAAGGGGGGACGACAAAGTCAAGACCAGAAAAATGcgagtccaattcaagaccatgaATGTTATTGTCAAATCACCACCATAGGAGTTaaaaatgtccagtatttctgtgttcatatttcagaataACATATGGATATTTTAGATATTCATAATAGTGAATAAATGCATGCTGAGGGCAAATAGAGCCACTCTACAAGTTATTACTAACCCAAACACACTGGGGAACAATGGGCTAAGGAAAGGGCTTaggatttataaaataattaTAAATTATACTATTTTAAAATGATGTTCTGATTTAATCATCAGTTTTTGTTGGATGGAAAGGGTTAACAGTTTACAGGGCTGCAGCAGGTGTTATCAAAGaggatgttgttgctaatttgttagcttctCCCATTTAAAGAATAACTTTCAACAAGAAGTTTCAAATGATCATCATCTGGTGAGTGGAACTTTTCTATTGCAGCGTGCTTGCTGTTagccatcaatcaatcaaatgtatttataacgcccttttttacatcagcagatgtcacaaagtgctgtacactaactcagcctaaaaccccaaaacgcaagcaatgcagatgtagaaagaAGTACGGAAATAACTTATTTGTGTGGAACACTGCTGCATTCAAAGTGGAACTGACCGCATTTTTTCAACAtgaaatctgttcatatacacccccaggaagaatgacACTTTAAAAAATTATTCTGACAAGTGACAaattagatatggtcattttcatgGTTTCCtaaattcttagaatgtttggaATGAAGTATTCTAAAGGATTTGTGAAAATAGAGAGTGGGAAAGCGGCCGAGCGTTTGggcaattaatagacactgctgtacaaaaaaaaaaacgaataaaaACCATTGGTCTTGTCCAGGACCGGAGACGACACGGAACGGACCGCTATAGCTAATCAGAGCTATAGTAGACCTTCATACAAACAAGTAATTTGAAACACGTGCCTGcaatcattcactttgaactggactgtgtgtttacaggctgTTGCAACAGCGCGACTTTAAATCATTATTACGCATTCGCCAaaaaccacaaaaaaaaacacacctgACTGGATTTCAGCAAAATGTcaacaccagcctaatctcgggagttgataggattgaagtcaaacagctcaatgcttgaagcacagcgacgagctgctggcaaaatgcacaaaagtgctgtttgactgaatgcttacaagcctgctggtgcctaccaccactcagtcagactgctatatcaaatcatagacttaattataacattataacacacagaaatacgagtcttacgtcattaatatggtcgaatccggaaactatcatctcgaaaacaagacgtttattattacagtgaaatacggaaccgttccgtattttatctaacgggtggcatccataaatctaaatattcctgttaacattgaaggttgtgcaatgtatgtcataattacgtacaattctggcaaaagggcggcccaaactgttgcatatacactgactctgcgtgcaatgaacgcaagagaagtgacaatttcacctagttaatattgcctgctaacctggattttttgtgtgcaaaatatgcaggtttaaaaatacactgctcaaaaaaataaagggaacactaaaataacacatcctagatctgaatgaatgaaatattcttattaagtacttttttctttacatagttgaatgtgctgacaacaaaatcacacaaaaattatcaatggaaatcaaatttatcaactcatggaggtctggatttggagtcacactccaaattaaagtggaaaaccacactacaggctgatccaactttgatgtaatgtcctaaagcaagtcaaaatgaggctcagtagtgtgtgtggcctccacgtgcctgtgtgacctccctacaacgcacgggcatgctcctgatgaggtggcggatagtctcttgagggatctcctcccagacctggactaaagcatccgccaactcctggacagtctgtggtgcaacgtggcattggtggatggagcgagacatgatgtcccagatgtgctcaattggattctggtctggggaacgggcgggccagtccatagcatcaaggtcatgctggaggatgttgcaggcagcagaacgttctccactgcgtctccagactctgtcacatgtgctcggtgtgaacctgctttcatctgtgaagagcacagggcgccagtggcgaatttgccaatcttggtgttctctggcaaatgaaaaacgtcctgcacggtcttgggctgta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnae-cuc-4 False 72 mRNA 0.65 1 49298506 49298577
TU702489 False 3306 lncRNA 0.42 1 49297929 49301234
TU702482 False 1996 lncRNA 0.38 1 49298610 49300605
TU702484 False 2625 lncRNA 0.40 1 49298610 49301234
TU702477 True 2552 lncRNA 0.41 1 49298683 49301234

Neighbor

gene id symbol gene type direction distance location
LOC110527950 LOC106582928 coding upstream 111537 49167003 ~ 49186969 (+)
LOC110527949 LOC106582927 coding upstream 144933 49148622 ~ 49153573 (+)
hmces hmces coding upstream 162754 49130079 ~ 49135752 (+)
tada3l LOC106582924 coding upstream 169174 49123482 ~ 49129332 (+)
LOC110527942 f264 coding upstream 191137 49078148 ~ 49107369 (+)
trnae-cuc-5 NA coding downstream 6926 49305503 ~ 49305574 (+)
LOC110527119 NA coding downstream 85725 49384302 ~ 49386132 (+)
LOC110527957 uba3 coding downstream 174949 49473526 ~ 49487883 (+)
nhe3 nhe3 coding downstream 216596 49515173 ~ 49534053 (+)
LOC110527958 tmf1 coding downstream 238612 49537189 ~ 49549801 (+)
G617346 NA non-coding upstream 888 49274883 ~ 49297618 (+)
G617347 NA non-coding upstream 8817 49287795 ~ 49289689 (+)
G617345 LOC106582936 non-coding upstream 14054 49275178 ~ 49284452 (+)
G617315 NA non-coding upstream 26868 49235981 ~ 49271638 (+)
G617383 NA non-coding downstream 43800 49342377 ~ 49344723 (+)
G617447 NA non-coding downstream 140208 49438785 ~ 49438992 (+)
G617763 NA non-coding downstream 153315 49451892 ~ 49452287 (+)
G617769 NA non-coding downstream 158828 49457405 ~ 49476811 (+)
G617811 NA non-coding downstream 241359 49539936 ~ 49540434 (+)
G617133 NA other upstream 471279 48826827 ~ 48827227 (+)
G615624 NA other upstream 1458784 47839388 ~ 47839722 (+)
LOC110528958 NA other upstream 2660552 46629591 ~ 46638492 (+)
G613664 NA other upstream 3019173 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 5270278 44002556 ~ 44035143 (+)
tafa4b LOC106583040 other downstream 273743 49571790 ~ 49620194 (+)
G618712 LOC106583033 other downstream 1004853 50303430 ~ 50304232 (+)
LOC110527970 LOC106583026 other downstream 1661917 50960494 ~ 51079129 (+)
G621650 NA other downstream 3092771 52391348 ~ 52391633 (+)
G621695 LOC106582949 other downstream 3192591 52491168 ~ 52493240 (+)

Expression


Co-expression Network