LOC110527957 (uba3)


Basic Information

Item Value
gene id LOC110527957
gene name uba3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 49473526 ~ 49487883 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609608.2
CttattttaaggttagggtttatggtagggacgtcccaaggatctcGGATTGCATTGTCCATCCCACTCCGGTGTCTGAGCAATGCATTGTGGGTAGCTATTTGTCTTCCTGGGCACGAAAATGGCGGATACGGACGAGCCGATGGTGGTGGATGGGGGCAGCAGAGACGGGGGCGAATGGGACGGACGATGGAACCACATCAATACGTTTCTGGAAAGACCAGGACCTTTCACTCACCCTGACTTTGAGCCGAGCACAGAGTCGCTCCAGTTTTTGTTAGACACCTGCAAAATACTTGTTATTGGAGCAGGTGGCCTTGGATGTGAACTTCTCAAAGATCTGGCCTTGTCAGGTTTTCGTCACATACACGTTGTTGACATGGATACCATTGACGTTTCCAACCTCAACAGACAGTTCCTCTTTAGGCTGAAGGATGTGGGTCGGCCAAAGGCAGACATAGCAGCGGATTTTATCAATGGACGCATTCCAGGATGCAACGTGGTCCCCCATTTCAAGAAAATACAAGACTTTGATGAGTCGTTTTATAGACAATTCCACATAATAGTTTGTGGACTCGACTCCATAATCGCCAGGAGATGGATGAATGGCATGTTGCTGTCTCTGCTGGTTTATGAAGACGGGGTGCTGGACCCCAGCTCCATCATCCCGCTGATTGACGGGGGGACAGAGGGCTTCAAGGGAAACGCTCGGGTCATCTTCCCTGGCATGACTGCCTGCATCGACTGCACCCTGGAGCTTTACCCACCACAGATTAACTTCCCCATGTGTACGATAGCCTCCATGCCCCGGTTACCAGAACATTGTGTTGAGTATGTCCGCATGCTGCTGTGGCCTAAAGAGAAACCCTTCGGAGATGGTGTGGGGCTGGACGCAGATGACCCGGAGCACATCCAGTGGGTGTACCAGAAGTCTCAGGAGCGGGCAGCAGAGTTCAGCATCACAGGAGTCACCTACAGACTCACCCAGGGTGTTGTAAAGAGGATCATCCCGGCTGTGGCGTCCACAAATGCAGTCATTGCTGCTGCTTGTGCCACGGAGGTCttcaaaatagcatcaagTGCCTACATTCCTCTGAACAACTACATGGTGTTCAATGACGTTGATGGTCTGTATACCTATACATTTGAGGCAGAGCGAAAGGAGAACTGTTCATCCTGCAGCCAAGTCCCCCAGGACCTGCACTTCTCTCCCTCAGCCAAGCTCCAGGAGGTGCTCGATTACCTGACTGAAAACGCTTCTCTACAAATGAAATCTCCAGCCATCACTGCGACATTGGAaggaaaaaataaaacattgtatTTGCAGACTGTCGCGTCAATTGAACAGAGGACACGCCCCAATCTGAGCAAGTCACTGAAAGAGCTGGGTCTGTTAGATGGGCAGGAGCTGGCCGTAGCTGATGTCACCACTCCCCAGACTCTGCTCTTCAAACTCAGCTTTACCTCTTAGGACCAGCATGTTCTCCCCAACATCAAACACCAGACGTCTTTGTTATTACTTTTCTAACAGAGTACCGAGTATTTGAAACATGTAAACATGAAGTTTTACAGTGTATTTAAgtgaatatgtaaataaatgtatttcatatCCAGTTCTCTGACATACTTATAGACTCAAGTCTATGAATGCATTTGGTTGTGGAAAGCCAAACTACTCCACTGTCATATTTGATCATATCTGCAACTGTTTGTGATGCATTTGCGTTATATGCACTGCAACCTCTCAAGCTCTCTTACACTGGAGAAAAAAACAGTACCATATTTAAATTGATTTCTCTTATAGTTTCTTGTGAGTTTAATTTATTTTCATTTCACCCAGACACAACCGGAATAAATGTTTTCCTGTACAATA
>XM_021609606.2
gggacgtcccaaggatctcGGATTGCATTGTCCATCCCACTCCGGTGTCTGAGCAATGCATTGTGGGTAGCTATTTGTCTTCCTGGGCACGAAAATGGCGGATACGGACGAGCCGGAGAAGAAAAGAAGGAGAGTAGTGGAGCTGACTGAGAAGATGGTGGTGGATGGGGGCAGCAGAGACGGGGGCGAATGGGACGGACGATGGAACCACATCAATACGTTTCTGGAAAGACCAGGACCTTTCACTCACCCTGACTTTGAGCCGAGCACAGAGTCGCTCCAGTTTTTGTTAGACACCTGCAAAATACTTGTTATTGGAGCAGGTGGCCTTGGATGTGAACTTCTCAAAGATCTGGCCTTGTCAGGTTTTCGTCACATACACGTTGTTGACATGGATACCATTGACGTTTCCAACCTCAACAGACAGTTCCTCTTTAGGCTGAAGGATGTGGGTCGGCCAAAGGCAGACATAGCAGCGGATTTTATCAATGGACGCATTCCAGGATGCAACGTGGTCCCCCATTTCAAGAAAATACAAGACTTTGATGAGTCGTTTTATAGACAATTCCACATAATAGTTTGTGGACTCGACTCCATAATCGCCAGGAGATGGATGAATGGCATGTTGCTGTCTCTGCTGGTTTATGAAGACGGGGTGCTGGACCCCAGCTCCATCATCCCGCTGATTGACGGGGGGACAGAGGGCTTCAAGGGAAACGCTCGGGTCATCTTCCCTGGCATGACTGCCTGCATCGACTGCACCCTGGAGCTTTACCCACCACAGATTAACTTCCCCATGTGTACGATAGCCTCCATGCCCCGGTTACCAGAACATTGTGTTGAGTATGTCCGCATGCTGCTGTGGCCTAAAGAGAAACCCTTCGGAGATGGTGTGGGGCTGGACGCAGATGACCCGGAGCACATCCAGTGGGTGTACCAGAAGTCTCAGGAGCGGGCAGCAGAGTTCAGCATCACAGGAGTCACCTACAGACTCACCCAGGGTGTTGTAAAGAGGATCATCCCGGCTGTGGCGTCCACAAATGCAGTCATTGCTGCTGCTTGTGCCACGGAGGTCttcaaaatagcatcaagTGCCTACATTCCTCTGAACAACTACATGGTGTTCAATGACGTTGATGGTCTGTATACCTATACATTTGAGGCAGAGCGAAAGGAGAACTGTTCATCCTGCAGCCAAGTCCCCCAGGACCTGCACTTCTCTCCCTCAGCCAAGCTCCAGGAGGTGCTCGATTACCTGACTGAAAACGCTTCTCTACAAATGAAATCTCCAGCCATCACTGCGACATTGGAaggaaaaaataaaacattgtatTTGCAGACTGTCGCGTCAATTGAACAGAGGACACGCCCCAATCTGAGCAAGTCACTGAAAGAGCTGGGTCTGTTAGATGGGCAGGAGCTGGCCGTAGCTGATGTCACCACTCCCCAGACTCTGCTCTTCAAACTCAGCTTTACCTCTTAGGACCAGCATGTTCTCCCCAACATCAAACACCAGACGTCTTTGTTATTACTTTTCTAACAGAGTACCGAGTATTTGAAACATGTAAACATGAAGTTTTACAGTGTATTTAAgtgaatatgtaaataaatgtatttcatatCCAGTTCTCTGACATACTTATAGACTCAAGTCTATGAATGCATTTGGTTGTGGAAAGCCAAACTACTCCACTGTCATATTTGATCATATCTGCAACTGTTTGTGATGCATTTGCGTTATATGCACTGCAACCTCTCAAGCTCTCTTACACTGGAGAAAAAAACAGTACCATATTTAAATTGATTTCTCTTATAGTTTCTTGTGAGTTTAATTTATTTTCATTTCACCCAGACACAACCGGAATAAATGTTTTCCTGTACAATA

Function

symbol description
uba3 Predicted to enable NEDD8 activating enzyme activity. Predicted to be involved in protein neddylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBA3 (ubiquitin like modifier activating enzyme 3).

NR:

description
NEDD8-activating enzyme E1 catalytic subunit isoform X1

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016881 acid-amino acid ligase activity molecular_function
GO:0008641 ubiquitin-like modifier activating enzyme activity molecular_function

KEGG:

id description
K10686 UBA3, UBE1C; NEDD8-activating enzyme E1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609608.2 False 1873 mRNA 0.47 17 49473526 49487883
XM_021609606.2 True 1885 mRNA 0.47 18 49473553 49487883

Neighbor

gene id symbol gene type direction distance location
LOC110527119 NA coding upstream 87394 49384302 ~ 49386132 (+)
trnae-cuc-5 NA coding upstream 167952 49305503 ~ 49305574 (+)
trnae-cuc-4 NA coding upstream 174949 49297929 ~ 49301234 (+)
LOC110527950 LOC106582928 coding upstream 286557 49167003 ~ 49186969 (+)
LOC110527949 LOC106582927 coding upstream 319953 49148622 ~ 49153573 (+)
nhe3 nhe3 coding downstream 27290 49515173 ~ 49534053 (+)
LOC110527958 tmf1 coding downstream 49306 49537189 ~ 49549801 (+)
LOC110527959 LOC106583042 coding downstream 61928 49549811 ~ 49565246 (+)
tafa4b LOC106583040 coding downstream 83907 49571790 ~ 49620194 (+)
LOC110527962 LOC106583035 coding downstream 611681 50099564 ~ 50229651 (+)
G617763 NA non-coding upstream 21239 49451892 ~ 49452287 (+)
G617447 NA non-coding upstream 34534 49438785 ~ 49438992 (+)
G617383 NA non-coding upstream 128803 49342377 ~ 49344723 (+)
G617346 NA non-coding upstream 175908 49274883 ~ 49297618 (+)
G617811 NA non-coding downstream 52053 49539936 ~ 49540434 (+)
G617890 NA non-coding downstream 81069 49568952 ~ 49569390 (+)
G617976 NA non-coding downstream 160218 49648101 ~ 49648349 (+)
G617993 NA non-coding downstream 172158 49660041 ~ 49661400 (+)
G617133 NA other upstream 646299 48826827 ~ 48827227 (+)
G615624 NA other upstream 1633804 47839388 ~ 47839722 (+)
LOC110528958 NA other upstream 2835572 46629591 ~ 46638492 (+)
G613664 NA other upstream 3194193 46278734 ~ 46279333 (+)
si:dkey-264d12.5 LOC106582817 other upstream 5445298 44002556 ~ 44035143 (+)
G618712 LOC106583033 other downstream 815547 50303430 ~ 50304232 (+)
LOC110527970 LOC106583026 other downstream 1472611 50960494 ~ 51079129 (+)
G621650 NA other downstream 2903465 52391348 ~ 52391633 (+)
G621695 LOC106582949 other downstream 3003285 52491168 ~ 52493240 (+)

Expression


Co-expression Network