LOC110527965 (LOC106583032)


Basic Information

Item Value
gene id LOC110527965
gene name LOC106583032
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 50390538 ~ 50438666 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983447.1
GGGAGGTGGTGCGGTTTCACACCCGGGGTGGGAAACATGGGTGGGGTCAatgactggttgactggcagtCAGAGTTTGCGACGCCTGTAGAATCCACAACAACCAGTGAGATTAGTAGTTTAACCTTTCTTCAAATTTGAGCCAATTGCAAGGGAAAATGGGAGGTTCCCAAGTGCTGTTGTGCATCCAACGTGGGACTATGGAACGAAGACTGAAAAGaattaagtaaaaaaaataaaaaataactcaTGGTGGATAGGGTCTGAAGTTGGGACTGAACCAGGCTCCGAACGCCGAGGTTTTCTGACCATAGACTGCATCTGATAAGCATTTACTAGGAACTACACTAACCCGTCGAGTGTGCGGCGAAATTGGGATCAATCGGCACAAAGTGTATACTTTTTGGGGTGTTTTGTAGCGCCATAAACGAGAAGTCAACGATAACTCTGTTTTCGGCACCGATCTCACCTCTTTCGAGTGCTTCATTTGCGTACCAGAGTAACGCCGTCAAAGTTTTAGCCAACATTCCAAGCGTGCGATGAAGAGAATATACATTAAAGAGTTTGTTCCGAGTGCCACTGCCGATGCAATCCGCATAGGCTAGTATTTGGAAAATGTGTGTCACATGTATATTTGACATGAACGCAATCTTAAGTTAAGAGCCCCTGTTGATGTTTGCCATGTTTTTTTCTCTGGCATTTTTAGGCTATTGATGTTTCCCCAAAACGAATCGCTTTGCCAAGAAAGGATCCTCATTTCAACCTTTTATGGACAAGTTCAATTTACTTGTATGTTATTTAATTCTGTCTGCTTGACACGTTTATTGTAGCCTTCTTGCTTCGTAACCGTGATTCACCTTTGATTTCAGCACACATTGGACAAAAGTTGGACTGGGAACTTGCGTCTAAACGACTCGGTTATTTGGAAGAGTAGACCAGTTGTACACGCCACAGGTGTTAGTTTTTTCTACATTTTACCACAACGCAATTTGTGATATAATAGACCGCACTATCTCTAAAACGGTACCAGATTTCCAATTTGTGGATACGACGAGAGATCAGTGGCCAGCGCGCGATTAAACTTGATACAAAATGGCGGCGTCCCTGGGTCGAATTGGATCGGTTTCTCACTTTGGTTTTTATTTAGTTTTATCGCTGGAACTGTTAATTAATTACGGCTTGAGTTCAGATTTACCATGTGCTCAGAACTGTACCTGCACTGGAGATTCTGTGGACTGTAGTCATTTGGATTTGACAGATACACCGCTGGACCTGCCCATTCAGACAGTTGCCCTAAATCTTGGCCACAACAAGTTGACAGCCATTGATGTCGGAGTCTTCTCAAACCTCCCAAACCTACGAGAGCTGCGCCTGGACCATAATGAGCTGACGTCCATCCCTGATCTAGGACCGTCTGTGTCTCAGATCGCTTCCCTCTACCTACACCACAATAAGATCCGCACCATCGATGGGAGGCGGATGAGAGACCTGATCTCCGTGGAAACCCTGGACCTGAGCAACAATGACATCACTGAAGTCAGAGTTCAAGGTTTCCCCGCAGGTCTCCAGATCAAAGACCTGTACCTGAGCAACAACAAAATACAGTTCCTGGAGGCCGGTGCTCTGGACCAGCTCTCCTCCACCCTGCAGGTTCTGAGACTGAGCCGGAACCGCATCTCTCAGGTCCCTGTCAAAGGCTTCCAGCTGCCCAAGCTCACCCAACTTGAGCTGAACAGGAACCGCGTGAGGCAGGTGGAGGGGCTGACCTTCCAGGGCCTGGCCAGTCTGGAGGTCCTCAAGCTGCAGAGGAACAACATCAGCAAGCTCACCGACGGAGCCTTCTGGGGCCTGGCCAAGATGAAAGTGCTTCACCTGGACTACAACAGCCTGAGGGAAGTGAACAGTGGCTCCCTGTACGGCCTGTCCTCTTTGCTGCAGCTCTTCCTCAGCAACAATTCCATCTCCCACATCAATCCAGATGGCTGGAGGTTCTGCCAAAGGCTACGGGAACTgAATCTGTCCTACAACAACCTGAGTCGTCTGGATGAGGGCAGCCTGGCGGTGCTGGGGGACCTCCACACCCTCCGTCTGGGGCACAACGCCATCAGCCACATCACCGAGGGGGCCTTCAGAGGCCTCAAGGCCCTGCGCCTCCTgGAGCTGGACCATAATGACATCTCAGGCACAATAGAGGACACCAATGGGGCCTTCTCTGGACTGGACAGCCTCAACAAGCTAACTCTGTTTGGAAACAAGATCAAGTCAGTGGCCAAGAAAGCCTTCTCAGGACTGGAGGCCCTGGAGCACCTGAACCTGGGAGAGAACGCCATACGCTCCATCCAGCCAGAGGCCTTCAGCAAGATGAGGAGCCTCAGGAACCTactcatCCAGAGTGACAGGTTCCTGTGTGACTGTCAGCTCAACTGGTTCCCTGAGTGGCTGATGACCCGGGGGCTACAGACTGGCGTAGAGGCTACCTGTGTCCACCCCGAAATCCTGAAGGGTACTAGCGTCTTCCAGGCTCCACCAGAGAGATTTGTCTGTgatGACCTGCCTAAGCCCCAGATCACGTTGCAGCCAGAGACCACAGTGACGGTTCTGGGTAGTGACGTGCGCCTCACGTGCACGGcagccagcagcagcagctcaCCTATGACCTTCGCCTGGCGCAAAGACCAGGAGCTGCTCCGTCATGCTGAGGTGGAGAACTTCGCCCACCTGCGCGCTAACCACGGGGCGGTGCACGAGGCCGGGGGGGTGATGGAGTACACCACCATTTTGCACCTGCGTCATGTGACCTTCGCCCACGAGGGCCGATACCAATGCATCATCACCAACCACTTTGGCTCCTCCTACTCCACCAAGGCCCGCCTTACTGTCAACGTCATGCCTACGTTTGTGAAGACCCCTCGAGACAACACCATCCGTACGGGCACCACTGCCAAGCTGGAGTGTGCGGCCGAGGGCCACCCCACCCCTGAGATCGCCTGGCAAAAGGACGGAGGCACGGACTTCCCGGCGGCACGCGAGCGGCGGATGCACGTGATGCCTGACGATGACGTGTTCTTCATCATGGACGTCAAGCTAGAGGACATGGGCGTGTACAGCTGCACCGCCAAGAACACAGCGGGCACCGTGTCTGCCAACGCCTCTCTCATCGTGCTAGAGACGCCCCACCTGGCCCAAGAGCTGGAGGACCatagtgtggtggtgggggaGACTGTAGCCCTGCAGTGTAAGGCCCTGGGCAGCCCCCCACCCAAAATCACCTGGCTGAGGAACGACGAGCCCCTCCGCTCCTCCGACCGACACCACTTCACCCCCGGCAACCAGCTGTTGGTGATCGGCAGCGCCGCCCTAGAGGACGCTGGCAGGTACACGTGCGTAATGTCTAACACGCTGGGCACAGAGCGCGGCCACAGCCAGCTGAGTGTCCGCCAGACCGGCTGCGTCGCCCCGTCCGGCCCCAGCACCGTCACTATGGGCATCATCGTCATCGCTGTGGTGACCAGCATCGTGGTGACCTCGCTGGTGTGGGTGTGCATCATCTACCAGACGCGCAAGAAGAGTGACGAGTGCAGCGTAACCAACACCGatGAGACAATCGTGCCCCCGGATGTCCCCAGCTACCTGTCCTCCCAGGGGACCCTCTCGGAGCGCCAGGACGTGTGTATCCGCGTGGAGGCTAGCATTGGACCTCCGCTCAACGGACACATAGACAACACAGGGGCTGGGACCTGTAGGCCTGGAGTaccaacaacacccccaccacaTGGACTACAATGTACCTGTACCCCTAGGGGTGGATACGGGACCCCTCTCCAACGGGACCCCCAACGGAGTCAGAAGGATTTCCTCGCCACCTGAATTTACATCACAGAGAAACCACCACGACAGAAaagGTCCCTCAGTGAACAGGACGGGACACACAACTCTAGTGTGCTCCCCATCCCAGGAGGAGGCCTTCCACAAGCCGGTGAAACTCGCCCCCGTAAGACGCCAAGACACACTGGACACGGATCGTGAGCCAGAGCTCAGACA
>XM_036983446.1
AGGTGGTGCGGTTTCACACCCGGGGTGGGAAACATGGGTGGGGTCAatgactggttgactggcagtCAGAGTTTGCGACGCCTGTAGAATCCACAACAACCAGTGAGATTAGTAGTTTAACCTTTCTTCAAATTTGAGCCAATTGCAAGGGAAAATGGGAGGTTCCCAAGTGCTGTTGTGCATCCAACGTGGGACTATGGAACGAAGACTGAAAAGaattaagtaaaaaaaataaaaaataactcaTGGTGGATAGGGTCTGAAGTTGGGACTGAACCAGGCTCCGAACGCCGAGGTTTTCTGACCATAGACTGCATCTGATAAGCATTTACTAGGAACTACACTAACCCGTCGAGTGTGCGGCGAAATTGGGATCAATCGGCACAAAGTGTATACTTTTTGGGGTGTTTTGTAGCGCCATAAACGAGAAGTCAACGATAACTCTGTTTTCGGCACCGATCTCACCTCTTTCGAGTGCTTCATTTGCGTACCAGAGTAACGCCGTCAAAGTTTTAGCCAACATTCCAAGCGTGCGATGAAGAGAATATACATTAAAGAGTTTGTTCCGAGTGCCACTGCCGATGCAATCCGCATAGGCTAGTATTTGGAAAATGTGTGTCACATGTATATTTGACATGAACGCAATCTTAAGTTAAGAGCCCCTGTTGATGTTTGCCATGTTTTTTTCTCTGGCATTTTTAGGCTATTGATGTTTCCCCAAAACGAATCGCTTTGCCAAGAAAGGATCCTCATTTCAACCTTTTATGGACAAGTTCAATTTACTTGTATGTTATTTAATTCTGTCTGCTTGACACGTTTATTGTAGCCTTCTTGCTTCGTAACCGTGATTCACCTTTGATTTCAGCACACATTGGACAAAAGTTGGACTGGGAACTTGCGTCTAAACGACTCGGTTATTTGGAAGAGTAGACCAGTTGTACACGCCACAGGTGTTAGTTTTTTCTACATTTTACCACAACGCAATTTGTGATATAATAGACCGCACTATCTCTAAAACGGTACCAGATTTCCAATTTGTGGATACGACGAGAGATCAGTGGCCAGCGCGCGATTAAACTTGATACAAAATGGCGGCGTCCCTGGGTCGAATTGGATCGGTTTCTCACTTTGGTTTTTATTTAGTTTTATCGCTGGAACTGTTAATTAATTACGGCTTGAGTTCAGATTTACCATGTGCTCAGAACTGTACCTGCACTGGAGATTCTGTGGACTGTAGTCATTTGGATTTGACAGATACACCGCTGGACCTGCCCATTCAGACAGTTGCCCTAAATCTTGGCCACAACAAGTTGACAGCCATTGATGTCGGAGTCTTCTCAAACCTCCCAAACCTACGAGAGCTGCGCCTGGACCATAATGAGCTGACGTCCATCCCTGATCTAGGACCGTCTGTGTCTCAGATCGCTTCCCTCTACCTACACCACAATAAGATCCGCACCATCGATGGGAGGCGGATGAGAGACCTGATCTCCGTGGAAACCCTGGACCTGAGCAACAATGACATCACTGAAGTCAGAGTTCAAGGTTTCCCCGCAGGTCTCCAGATCAAAGACCTGTACCTGAGCAACAACAAAATACAGTTCCTGGAGGCCGGTGCTCTGGACCAGCTCTCCTCCACCCTGCAGGTTCTGAGACTGAGCCGGAACCGCATCTCTCAGGTCCCTGTCAAAGGCTTCCAGCTGCCCAAGCTCACCCAACTTGAGCTGAACAGGAACCGCGTGAGGCAGGTGGAGGGGCTGACCTTCCAGGGCCTGGCCAGTCTGGAGGTCCTCAAGCTGCAGAGGAACAACATCAGCAAGCTCACCGACGGAGCCTTCTGGGGCCTGGCCAAGATGAAAGTGCTTCACCTGGACTACAACAGCCTGAGGGAAGTGAACAGTGGCTCCCTGTACGGCCTGTCCTCTTTGCTGCAGCTCTTCCTCAGCAACAATTCCATCTCCCACATCAATCCAGATGGCTGGAGGTTCTGCCAAAGGCTACGGGAACTgAATCTGTCCTACAACAACCTGAGTCGTCTGGATGAGGGCAGCCTGGCGGTGCTGGGGGACCTCCACACCCTCCGTCTGGGGCACAACGCCATCAGCCACATCACCGAGGGGGCCTTCAGAGGCCTCAAGGCCCTGCGCCTCCTgGAGCTGGACCATAATGACATCTCAGGCACAATAGAGGACACCAATGGGGCCTTCTCTGGACTGGACAGCCTCAACAAGCTAACTCTGTTTGGAAACAAGATCAAGTCAGTGGCCAAGAAAGCCTTCTCAGGACTGGAGGCCCTGGAGCACCTGAACCTGGGAGAGAACGCCATACGCTCCATCCAGCCAGAGGCCTTCAGCAAGATGAGGAGCCTCAGGAACCTactcatCCAGAGTGACAGGTTCCTGTGTGACTGTCAGCTCAACTGGTTCCCTGAGTGGCTGATGACCCGGGGGCTACAGACTGGCGTAGAGGCTACCTGTGTCCACCCCGAAATCCTGAAGGGTACTAGCGTCTTCCAGGCTCCACCAGAGAGATTTGTCTGTgatGACCTGCCTAAGCCCCAGATCACGTTGCAGCCAGAGACCACAGTGACGGTTCTGGGTAGTGACGTGCGCCTCACGTGCACGGcagccagcagcagcagctcaCCTATGACCTTCGCCTGGCGCAAAGACCAGGAGCTGCTCCGTCATGCTGAGGTGGAGAACTTCGCCCACCTGCGCGCTAACCACGGGGCGGTGCACGAGGCCGGGGGGGTGATGGAGTACACCACCATTTTGCACCTGCGTCATGTGACCTTCGCCCACGAGGGCCGATACCAATGCATCATCACCAACCACTTTGGCTCCTCCTACTCCACCAAGGCCCGCCTTACTGTCAACGTCATGCCTACGTTTGTGAAGACCCCTCGAGACAACACCATCCGTACGGGCACCACTGCCAAGCTGGAGTGTGCGGCCGAGGGCCACCCCACCCCTGAGATCGCCTGGCAAAAGGACGGAGGCACGGACTTCCCGGCGGCACGCGAGCGGCGGATGCACGTGATGCCTGACGATGACGTGTTCTTCATCATGGACGTCAAGCTAGAGGACATGGGCGTGTACAGCTGCACCGCCAAGAACACAGCGGGCACCGTGTCTGCCAACGCCTCTCTCATCGTGCTAGAGACGCCCCACCTGGCCCAAGAGCTGGAGGACCatagtgtggtggtgggggaGACTGTAGCCCTGCAGTGTAAGGCCCTGGGCAGCCCCCCACCCAAAATCACCTGGCTGAGGAACGACGAGCCCCTCCGCTCCTCCGACCGACACCACTTCACCCCCGGCAACCAGCTGTTGGTGATCGGCAGCGCCGCCCTAGAGGACGCTGGCAGGTACACGTGCGTAATGTCTAACACGCTGGGCACAGAGCGCGGCCACAGCCAGCTGAGTGTCCGCCAGACCGGCTGCGTCGCCCCGTCCGGCCCCAGCACCGTCACTATGGGCATCATCGTCATCGCTGTGGTGACCAGCATCGTGGTGACCTCGCTGGTGTGGGTGTGCATCATCTACCAGACGCGCAAGAAGAGTGACGAGTGCAGCGTAACCAACACCGatGAGACAATCGTGCCCCCGGATGTCCCCAGCTACCTGTCCTCCCAGGGGACCCTCTCGGAGCGCCAGGACGTGTGTATCCGCGTGGAGGCTAGCATTGGACCTCCGCTCAACGGACACATAGACAACACAGGTTACAATGGGGCtgtagtgtgtacagagtgtatGGAGAACGGAAACAGCTACTCCAAGACAGACTTTGACTATCTCACCCAGGGGCTGGGACCTGTAGGCCTGGAGTaccaacaacacccccaccacaTGGACTACAATGTACCTGTACCCCTAGGGGTGGATACGGGACCCCTCTCCAACGGGACCCCCAACGGAGTCAGAAGGATTTCCTCGCCACCTGAATTTACATCACAGAGAAACCACCACGACAGAAaagGTCCCTCAGTGAACAGGACGGGACACACAACTCTAGTGTGCTCCCCATCCCAGGAGGAGGCCTTCCACAAGCCGGTGAAACTCGCCCCCGTAAGACGCCAAGACACACTGGACACGGATCGTGAGCCAGAGCTCAGACAGACTCTACTGTCCAACGGACACACTCCCAGAGCCTCCCAGAGTGACAGCACCCCCCTCAGGAGCGCCAGCGACTAGCAGGCCCTCCCCACCCTGACACTAATAGACTCACTAGCCCTGAGTGGACTTGTTCTTTGCACTGGGAACTGCTACCTCAAACAGAGAGGCCAAGATCTGATCCCCTCCCCTGTTTGGACTAACAGGGTGGGAGCTGGGAGGGGGGTGGCATCCAGAGGTTTGAAGGCAGAGCTTGTGTGGGTGGCGTCCCATTTGAGCGTATCAGCTGTACATACTTAAAAACCTTCCCCTGGGAGGTGTCAACCAATCCTAGCTCCAAATGTGACTTGCATTTGAAGCATGCAAATGTAGGGAATGTTTTACAGTAATGTgtgaaagagagcgaaagagatatatatataccATTGGACAATTAACTGTACATAAGAGTTttcatatatattatataacttTTACAAAGAGTATTTGAATTTATTCTGTGCATGACAAAGAACGGAGTGATGGTATTTTTTTCTCTTTTAAAAGCCTCTACTTACCAGCTTCAACTGCGGTGCCTTATTGCATGATCAAAGAAACCACAAACGGGACTCGTAGTATAGCAGAGATTTGTGAGAGCTATCGTACACTCTTTGTCATACCATGGAACACTTTATTGCACTTGAATGTTGTTTGACaaacgcaaatgctgccatcatgGCCTTAAACCATAACTCATATTTCCTGGTATTTTATGAAGGAAgctttaatttgtatttattttggtaCGTGATATGGTAACACCTATGACAAGGAAGTGTTTGGGATATTAATCTAGGTTTTTGATGTTTAAGCACTTTTGTACTCATCATAAATGACCTCTGGAAACAGACTCGGTACATGTAACCCAATAGGAACGTAAGAAACCCTAGTCAGGAAATGCGACTCATTTCTGACATAGCCATGGAATGTCAAGTCTCTTCCACCTGTCATGGTactaactacagtgccttcagaaagtattcataccccttgacttattccacgttttgttgttataacagcctgaattcaaaatggattttcacccatctacacacaattaccccatgacaaagtgaaa

Function

NR:

description
leucine-rich repeats and immunoglobulin-like domains protein 1

GO: NA

KEGG:

id description
K24610 LRIG1_3; leucine-rich repeats and immunoglobulin-like domains protein 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983447.1 False 4040 mRNA 0.54 18 50390538 50437551
XM_036983446.1 True 5235 mRNA 0.51 18 50390541 50438666

Neighbor

gene id symbol gene type direction distance location
LOC110527962 LOC106583035 coding upstream 160887 50099564 ~ 50229651 (+)
tafa4b LOC106583040 coding upstream 770344 49571790 ~ 49620194 (+)
LOC110527959 LOC106583042 coding upstream 825335 49549811 ~ 49565246 (+)
LOC110527958 tmf1 coding upstream 840737 49537189 ~ 49549801 (+)
nhe3 nhe3 coding upstream 856485 49515173 ~ 49534053 (+)
magi1b LOC106583030 coding downstream 158526 50597192 ~ 50798627 (+)
LOC110527968 LOC106612786 coding downstream 178564 50617230 ~ 50621394 (+)
LOC110527969 LOC106583028 coding downstream 441632 50880298 ~ 50957676 (+)
LOC110527970 LOC106583026 coding downstream 525426 50960494 ~ 51079129 (+)
psd6 psd6 coding downstream 654606 51093272 ~ 51097448 (+)
G618989 NA non-coding upstream 19728 50370565 ~ 50370810 (+)
G618971 NA non-coding upstream 34182 50355933 ~ 50356356 (+)
G618968 NA non-coding upstream 36961 50353326 ~ 50353577 (+)
G618944 NA non-coding upstream 63107 50327117 ~ 50327431 (+)
G618928 NA non-coding upstream 75006 50315232 ~ 50315532 (+)
G619085 NA non-coding downstream 3586 50442252 ~ 50442534 (+)
G619112 NA non-coding downstream 43598 50482264 ~ 50482571 (+)
G619198 NA non-coding downstream 322611 50761277 ~ 50761738 (+)
G619590 NA non-coding downstream 406049 50844715 ~ 50844915 (+)
G619597 NA non-coding downstream 411468 50850134 ~ 50850383 (+)
G618712 LOC106583033 other upstream 86306 50303430 ~ 50304232 (+)
G617133 NA other upstream 1563311 48826827 ~ 48827227 (+)
G615624 NA other upstream 2550816 47839388 ~ 47839722 (+)
LOC110528958 NA other upstream 3752584 46629591 ~ 46638492 (+)
G621650 NA other downstream 1952682 52391348 ~ 52391633 (+)
G621695 LOC106582949 other downstream 2052502 52491168 ~ 52493240 (+)
G623180 NA other downstream 3315240 53753906 ~ 53754119 (+)
G624628 NA other downstream 4384971 54823637 ~ 54824199 (+)

Expression


Co-expression Network