LOC110528963


Basic Information

Item Value
gene id LOC110528963
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 50509424 ~ 50540585 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110528963
atgtccgggagggcactcCCCTGGGCCACggcggtgtgggagcaacaatccaccGTCTGCCTCAATCTGGAGCCTGCTGTGGGGCGACTAGTCCAAGTCTCTCCAGGTACTCATCGACTCGGGGGGCCAGGCATCCCCACTCAAcgcctctccattcccatgggtgTTAGAGCGCTGGATGTGCGCTCTATAGGCCAGGTCACCCACCAGACCACCCCCGTAAACCTACGAGTGTCGGGGAACCACAGTGAGACGATCCAATTCCTGCTAGTTGAGTTTCCGCAGGTTCCaggattctcttggctccaGACATCTTCCTGGGGCTTGGAAATTGCCCGGACCTTTCCACCTGCTCTGCATGCaaagtaccaggacctccgggaggaGTTCAGTAAGACCCGGGCCACTTCGCTTCCGCTGCACCGACCAGTATCCAAGGAGGTCAAGCCTGAGGTGCTGGCATGCCACGGCTACTATCTCCGAAGCCGAGACCCCttcagctttgaTGCTCTGGAACCTGGTGTTGTTGTCACCACGGAGGGTTCGGACAAGTTTCAGCTGCTGCACGAAGCTGAAGTCCTTCCTCCCAAAGATGGATACAGTCAGGAAGTGAACATGTCCAGCCGGGTCGTCCCTTGCCATTATCCCTGTTAAGCTAGGCCTGCACTCCATCGACGTCAAGGCTTCTGTGAAACACTCCTACAACAATGACAATGGGGTTAAGAGGGACCTTCGCATTGTGGCTGAGGGGTTGCTAGTCAAGAAGGAAACCATCATACTCCTGAACCCTGCTAAACATGGTGGGGAGCAGACGGCACACATACCCAGTGGAGTGCCTAGGAACCAGGTGCCAAACTCTGATGCTGTCACACTGATCAGTGTGCTGGTGGAGCAGGCCATCAGTGGAGACTAACTGGGCAATCTGATAGTTCAGCCAGTCGGGAGTGGGGAAGAGATCATGATATGCATGACCCTGCCTGTCATTGCTACACACTACCTGTACAACACCAAAAAGTGGGAGGAAATTGGCTTGGACAAATTAAGCACAACCATCAAGTACATCAACATAGAGCTGCCATACCGTAAATATAATGGCCCCTACACTGCCTGGGTCAGCAGAAAGAGCAGCACCTGGCTGACAGTGTATGTAGAAAAGGTGTTTGCCATGTCCAGTACTCTGATCAGTGTTCTGGAGAAAGTGCTCTGTAGTACAGCCAAGTGGCTGATCCTGCACACACAACAGCCTGATGGCATCTTCAGTGAGTTTGCTCCGGTCATTCATGCAGAGATAACAGGTAACATGAGGGGGTCGGACATTGACACCTCAATGACAGCCTTCGTTCTCATCGCCATGCAAGAGGCACGCTCACTGTGTGAGCAGTCTGTCAACAGCCTTCCAGTCAGTATGATTAAGGCAGTAACGTACCTGGAGAGGCATCTGGCCACCCTAAATAACCCCTATGCTGTAGCTATGACCTCCTATGctctggcaaatgcaggaaaacTCAACAAGGAGACCCTACTGAAGTTTGCATCTCCACAGCTGGACCACTGGCCAGTACCTGATGGTAATCAGTACACGCTGGAGGCCACATTGTACGCTGGCCTTGTTCAAGGTGAAGGCTATCGAAGAGGCCGGCCACATTGTCAAGTGGCTCAACACGCAGAATAAGGTGGGAGGGGATACGGATCCACACAGTCCACCATCATGGTGTTCCAGGCTGTGACTGAGTATTGGAGCAACGTGAAGGAACGAAAGGACATTGACCTGAACATCCACATAGAAGTGGCCGACAGAGCATCAGTTGCCAGGTGGGCCATTAACAACAAGAACCAGATCCTCAGTCATAATGACAAGGTCAACGCCATAGACAAGAACCTGACAGTAAAAAGCCTCAGGAAATATTGAGGCGACTGTGTCGGTGGTGAAGCTGTACAATGCCCAGCCAGAGGAAAAGGGCAGtgacctctctctcaccctcactaaGATGGACAAAACAAGCCAACGAGGATGCCAGCGAGTTGTTCATGCTCACTATTCAGATGGTTCATCGTAACTTGGAGAGACGCAACATTTTCTGTCCTGGACATCGGCATGCTGACAGGCTTCATTGTAGATGCAGACAATCTGAAAAAGTTGCCAGAGGGGAGGATGCACTACGTAGATACATTTGAGAGGGATAAAGTTCTGTCTGAAAGAGGCTCTCTCTATAAGGGCACAGGTAAGGTATCCCATAAGCTAGcagacaaaatatattttgagatcCACAGTTCTAAAGCCAGCTGCCGTCTCTGTATACGAGTACTACAATCAGAAGGACTGTGTGAAGTTCTACCACCTACAGAGGGAGGACGGTACCCCGAGCAGACTGTCTCTCGGAGACGTGTATGTGTGCTGA
>TU704599
acaggaggcagagtCTCTTATATGTATTAGcatccaaggggcaggcaagagaatggtcatggacaggcaaaaagatCATGACAAGGTCAGAGTCCAGTAGGTACAGAGTGCCCGGCAGGCTGGTGGTcaggcaggcagtatggtcaggcaggcgggttcagagtcagggcaggcagtatggtcaaaaccgggaggactagcaaaagagataAGAAAAAGCAGAAGCAcgggaaaaacacactggttgacttgacaagacgaacaggcacagagagacaggaaacacagggataaatacaacaggggaaataagcgacacctgtTGGGGGTGAAGACAAtgacaaggacaggtgaaacagatcagggtgtgccACTCTCATCCTATATCTGGAGTAAGGTATCCCATAAGCTAGcagacaaaatatattttgagatcCACAGTTCTAAAGCCAGCTGCCGTCTCTGTATACGAGTACTACAATCAGAAGGACTGTGTGAAGTTCTACCACCTACAGAGGGAGGACGGTACCCCGAGCAGACTGTCTCTCGGAGACGTGTATGTGTGCTGAAGAGTGCTGCAGTATGCAGAAGAAAGAGTGGGTGAACACGGACTGCTGC

Function

NR:

description
complement C3-like

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0006956 complement activation biological_process
GO:0010466 negative regulation of peptidase activity biological_process
GO:0052548 regulation of endopeptidase activity biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110528963 False 2399 mRNA 0.52 6 50509473 50540585
TU704599 True 618 lncRNA 0.50 1 50509424 50510041

Neighbor

gene id symbol gene type direction distance location
LOC110527964 LOC106583033 coding downstream 203195 50300364 ~ 50306278 (-)
LOC110527963 LOC106583034 coding downstream 209336 50279611 ~ 50300137 (-)
LOC110527961 LOC106565835 coding downstream 572898 49660022 ~ 49936575 (-)
LOC110527956 LOC106583046 coding downstream 1076091 49389037 ~ 49433382 (-)
LOC110527955 LOC100195900 coding downstream 1128789 49342358 ~ 49380684 (-)
LOC118965294 NA coding upstream 396624 50937209 ~ 50939964 (-)
LOC118965295 NA coding upstream 546704 51087289 ~ 51091164 (-)
LOC110527971 LOC106583024 coding upstream 556872 51097457 ~ 51152020 (-)
LOC110527973 synpr coding upstream 638618 51179203 ~ 51207209 (-)
ptprga LOC106583020 coding upstream 908446 51449031 ~ 51726478 (-)
G619126 NA non-coding downstream 19829 50489424 ~ 50489644 (-)
G619098 NA non-coding downstream 51311 50457881 ~ 50458162 (-)
G619090 NA non-coding downstream 60314 50448952 ~ 50449159 (-)
G619084 NA non-coding downstream 67398 50441856 ~ 50442075 (-)
G619081 NA non-coding downstream 67847 50437433 ~ 50441626 (-)
G619353 NA non-coding upstream 10275 50550860 ~ 50558973 (-)
G619478 LOC106583030 non-coding upstream 164497 50705082 ~ 50798597 (-)
G619509 NA non-coding upstream 203183 50743768 ~ 50744045 (-)
G619514 NA non-coding upstream 212507 50753092 ~ 50753595 (-)
G619584 NA non-coding upstream 298707 50839292 ~ 50839529 (-)
mustn1b mstn1 other downstream 1212225 49295040 ~ 49297305 (-)
G617632 NA other downstream 1313503 49195604 ~ 49195970 (-)
G617624 LOC106582928 other downstream 1323377 49184424 ~ 49186096 (-)
G619733 NA other upstream 415686 50956271 ~ 50958540 (-)
G622985 NA other upstream 2764951 53305536 ~ 53322831 (-)
G625426 NA other upstream 4531894 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 4623907 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 4892871 55420466 ~ 55566988 (-)

Expression


Co-expression Network