LOC110527969 (LOC106583028)


Basic Information

Item Value
gene id LOC110527969
gene name LOC106583028
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 50880298 ~ 50957676 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609619.2
TAGCCCACCACAGTTGTCTCTCCGACCCTTCTCTCTGCAGTAAGCATGTTCGCCAGGGTATCTGCGAACCGCTCACGACCCAACGCACGTTACCGGTGAGAAACACCCCACGGAAGAGTCAAGGATAATCGATTTGGATGTGGCGCGCACTTGAGAGTTTGAATACGGTGGTAAGCCCGAGTGACCGGAGCACCGGCAGTGAAGGAGGAATACTATATTCGGGGTGGCGCTCTCTACTTAACGTGGACAATCATGCATATGCTGTTTTGGGGACTAGGGTTTTTGCTATTTCTCCCTGACTTTTTGAATATAGTGTCATCTACGGGGAGATCGCTATTGAGTTCAAGAAAAGCTAAAATTTCCGAGCAGCTTGGCGCATATGAGATTGTAACTCCGGAGCGAGTGAATGAAGCCGGTGACAACTTTCCCACGAGCGTGCACTTCAAAAGGAAAAAGCGTAGTGTGGAGGATAGCCCAGACAACTCCTCTGACCAATGGGCCTTGCCATCAATCCATTACAAAATATCTGCGTTTGGACAGAACTATCACCTCAACCTGACACTCGAGTCAGGATTTATCGCTCCGCTATACACTGTGACAGTACTTGGAGCACCTATAGTTAACATAACGGATTTCACcccggaggaggagacggaggaggATACGGAGTATCAGCACTGCTTCTATAAAGGACATGTGAATGCTCAAACGGAGAACACCGCAGTCATCAGTCTCTGCTCTGGATTGCTTGGCACTTTCAGGTCACCGGAAGGGGAATATTTTGTGGAGCCCCTTCACAGTTACAATGGAGAACTCTATGAAGAAGAACACACCAAACCTCATATTGTGTACAGAAAGAAAGCCTCTGTGAATGAGGCAGCCGTGGAGGACACTGCTTGTGACACATCAGgacataaacacagacacaagAGGAACAGCGACAAGGTGAAGAGACGTCCGCTGtccagcagtagcagcagcatgctGGACGACCTGGACGACCTGGACGGCCTGTCTGCAGGCCTGACTGCCGATCCCTTctccagaacagagagagagagcggcagacgGCCGGCTAATGACAGCAGCGGCGACTCAGGACCTCACAGGAGATCAAAGCGCTTCCTCTCCTATCCCCGCTTTGTAGAGGtcatggtggtggcagacagCAAGATGGTGGAACATCACGGGAGCAACCTTCAGCACTACATACTCACATTAATGTCTATCGTGTCTTCCATCTACAAGGATCCCAGCATCGGAAATCTGATTAACgttgtgattgtgaagttagtCATAATCAACAATGAGCTGGATGGCCCAACCATTTCCTTCAATGCACAGACCACTTTAAAGAACTTCTGTATCTGGCAACAGAGGCAAAATCACCAAGATGAGAATCATCACTCCCACCACGACACAGCCATTCTCATCACCAGGCAAGACATCTGCCGAGCGCGGGACAAGTGTGACACATTAGGGCTTGCAGAGCTCGGCACCGTGTGTGATCCATACAGAAGCTGCAGTATTAGTGAGGACAATGGGCTCAGCACTGCGTTCACTATCGCCCATGAACTGGGCCATGTATTCAACATGCCCCATGATGACAGCAACAAGTGCAAAGAGGAGGGGGTTAAAATACAGCAGCATGTGATGGCGCCCACACTCAACTACTACACTAACCCCTGGATGTGGTCCAAGTGTAGCAGGAAATACATCACAGAGTTCCTTGACACAGGGTATGGAGAGTGCTTACTTGATGAGCCCATTTCTAGGCCATACAGTCTGTCGCAGCAGCTGCCTGGACGGATATACAATGTCAATAAACAATGTGAATTGATATTTGGGCCGGGGACACAGGTGTGCCCTTATATGGTCCAGTGCCGCAGACTGTGGTGCACCAGCCCAGAGGGGGCCCAGAGGGGCTGCAGGACCCAACACATGCCTTGGGCTGACGGGACCGAGTGCTCTCCAGGAAAGCACTGTAAACATGGCCAGTGCATTCCCAAGGAGCACGACGCCACCCCCGTGGACGGGGCATGGGGAGGCTGGTCTCCGTTTGGCTCTTGCTCGAGGACGTGTGGCGGGGGCATCAAGATTGCCGTGCGCGAGTGCAACCAACCTGTGCCCAAGAACGGGGGGAAGTACTGTGTGGGGCGCAGGATGAAGTTCCGCTCGTGTAACTCAGAGCCCTGCTCCAAGCAGAAGAAGGACTTCAGAGAGGAGCAATGTGCTGCCTTTGATGGCCGGCACTTCAACATCAACGGTCTACCTCCTAACGTGCGCTGGGTACCCAAGTACAGCGGaaTTCAGATGAAGGATCGCTGTAAGCTGTTCTGCAGGGTGGCTGGCAGCACGGCCTACTACCAGCTCAGGGACCGGGTCATCGACGGCACGCCATGTGGCCCCGACACCAACGACATCTGTGTGCAGGGCCTGTGCAGGCAAGCGGGATGTGACCATGTGTTGAATTCCAAGGCGAGGAGAGataagtgtggtgtgtgtggcggTGACAACTCCTCGTGCAAGACCGTGGCAGGCACCTTCAACATGGTGCGCTACGGATACAACGAAGTAGTGAGAATACCCAGTGGTGCTACAAATATTGATGTGCGTCAACACAGCTACTCAGGGAAACCAGAGGACGATAACTACCTCGCTGTTTCAAACAGTCGTGGGGACTTCCTGCTCAATGGCGAGTTTGTAGTCAGCATGTTTAAAAGGGAAATCAAAGTGGGCAATGCCGTCATCGAGTACAGCGGATCCGACCACGTCATCGAGAGAATCAACTGCACTGACCGCATCGAGGAGGAGATCATTGTCCAGGTGCTTTCTGTAGGTAACTTGTACAACCCAGACGTCAGGTACTCCTATAACATCCCCATCGAGGATAAACCCCAGCAGTTTGTCTGGGATGCCTACGGGCCCTGGCAGGACTGCAGCAGGCCCTGCCAAGGAGAGCGTAAGAGGAAGATCCTGTGTAGTAGAGAGTCGGACCGTGTGGTGGTCTCAGACCAGAGGTGCCATGGGGCCGCCAGACCAGCCATGGTCACAGAACCCTGCAACGCAGAGTGTGAAATCAGGTGGCATGTGGCGAGGAAGAGCGAGTGCACAGTCCCATGTGGGGTGGGATATCGTACGCTGGAGATCTACTGCGCCAAACTCAGCCGTGCCGATGGAAAGACCCAGAAGGTGGACGAGCGTTACTGCAGCAGTCAACGCAAACCTGACAACAAGGAGAGTTGCCATGGAGACTGTAACCCAGGAGGATGGGAGTACTCATCTTGGTCAGAGTGCTCCAAAAGCTGTGGAGGAGGGTCCCGGCGTCGTGCGGCTGTGTGTGGAAAGTCTTCTGAGGCGGGAAGTGATGAGAGCAAGTGCAGCCAGAGAGACAAGCTGACCACCGTCCAGAACTGCAATGAGTTCCTATGTCCTGCGTGGAAGACCGGAGACTGGTCTGAGTGCCTGGTGACGTGTGGGAAAGGGTACAAGCATCGGCAGACATGGTGCCAGTTTGCGGAGGACCGACTGGACGACCGCTTCTGTGACTCGATGTCCAAGCCTGAGTCCGTCCAGACGTGTCAGCAGCAGGATTGTGCTTCGTGGCAGGTCGGACCATGGGGACAGTGCACTACCTCGTGTGGACCAGGCTACCAGATGCGAGCTGTGAAGTGCGTTGTGGGGACATACGGGTCCGTCATGGACGACACTGAATGTAACGCTGCCACGCGGCCCACTGACACTCAGGACTGTGAACTGACCCAGTGTCCCATCAGTCACCCGGTACCGCCGGGGACCAAAGTGccctcccacctcccacacaaAACCCAGTGGAGGTTCGGCTCCTGGACACAGTGTAGCGCCACTTGCGGCAAAGGGACCCGGATGCGCTATGTCAGTTGCCGTGACAACCAGGGTGGCGTTGCGGAGGATTCTGCCTGCTCCCACCTGGCCAAGCCCCCGGCCAGGGAGGTGTGCTCTGTAGTGGCCTGCGGACAGTGGAAGGTCCTTGAATGGACATCTtgtTCTGTATCCTGCGGGCAGGGGAAGACCACACGCCAGGTGGTGTGTGTGAACTTCAGTGATCAGATAGTGGACGTAGTGGAGTGTGACGCTGATGACCGTCCGGCCACAGAGCAGGAGTGTGCCATGTCCCAGTGCCCTGCTGCCCGCTCCAGTGACTCTCGGCCCCTCCCTTCACCCAGCGGGGGCCCCCGCAATAACCTGCCCACGACTGCTGATGGGCGCGGTGGAGGGCGAGCCCAGGCCCACCAGTGGAGAACAGGACCCTGGGGAGCGTGCTCGAGCACGTGTGCGGGCGGCTTCCAGAGGCGTGTGGTGGTGTGCCAGGATGAGAATGGTTATGCTGTCAACAACTGTGAGGAGCACTCCAAACCCATCGAGCAGCGCTCCTGTGAGTCCGGACCCTGTCCACAGTGGGTCTATGGGAActggggagagTGTACCAAGCCGTGTGGGGGAGGAATAAAGACGCGGCTCGTGGCGTGTCAAAGGCCCAACGGAGAGCGCTTTAACGATCTGAGCTGTGAGATTCTTGACAAACCGCCCGACCGTGAGCAGTGCAATACTCAGTCGTGCCCGTCTAACCCCCACTGGAGCACAGACCCATGGAGCTCGTGTTCTTCCGCCTGTGGTAAAGGATCGAAGAACCGTAAGGTGAGCTGTGTGACCCGATCCGGTCGACCTGTTCCAGAGGACAACTGTAAACACCTGACCCAACCCAGCAAGGAGAGGAGCTGCCGGGGGCGCCGCTGCCCCAAATGGAAGGCAGGGAGCTGGGGAGAGTGCTCAGCGTCATGTGGCAATGGAATTCAAGAGCGGGAAGTTTTCTGTGAGGTTGGAAACCGGCGCAGCCCGGAGGAGACTGAATGCCCCCCATCCTCCCGTCCGGCCTCCAGCCAGACCTGCCGGGTCACTGACTGCCCGTCTCCGTACCGGTGGAGCAAGGGAGAGTGGCAATCGTGTAGTAAGTCGTGTGGGTCGGGCCACCGGCGTCGAGCGGTGCTGTGTATGGACCAGACAGGGGAGGAGGTCCATGAGATGTTCTGTGTGGATCAGAGAAGGCCAGATGACTCTGAGAGCTGTAATACCCACGTCTGTGAGTTCATCTGGATCACAGGGGACTGGACAGAGTGCTCGGCCAGCTGTGGACAGGGATACCACAGACGCCTAGTCTCCTGCAGTGAGGTGCATGCTGGGAATGATAACTATGAGTATGGGCATCAGTCTTTGTCCAACTGCCCTGGGACCCCCCCTGAGAGCTACATGCCGTGTAGCCAAAGCCCCTGTCCTCCAACACACGAGTGGAGAGTTGGAGTCTGGGGACCTtGTTCAGTAAGCTGTGGAGGTGGGGTGATGGAGAGGACAGTGCAGTGTGTGTCTACTGAGGGACAAGGCAGTGACAGTTGTCCCTCAGAAACTAAACCAGAAGCCAGCAAAGTCTGCAGCAGCCCTGCCTgCCATCTGCCCACTAGCTGCAGTGACGTCCAGAGTCTGTCTGGCGTCCAGCCTGATGGTGAACAGTTTCTCAACGTACAAGGAAAAGCACTCAAAgtcTACTGTGCAGGAATGCAGACTGACAGGCCGCAGGAGTACCTCACCTTGACGACCGGAGAGGGAGAGAACTACTCTGAAGTCTTTGGCTTCAGACTGATAGACCCCACACAGTGCCCTGCTAACGGGACAAGGAGAGAGGACTGTGAGTGTAGGAGAGACTACACCGCTGCTGGCCTCTCCACCTTCACCAGAGTACGACTGGACCTCAGCAAGATGCACATCATCACCATAGACTGGCAGTTTGCTTTCACACGCGACGGCCACAGAGTTCCCTTTGCCACCGCTGGAGACTGCTACAGCGCTGCCCGGTGTCCACAGGGTCGTTTCAGCATCAACCTCTCAGGGACAGGCTTCCAGATAGCTGAGGAAACCAAGTGGATCTCCCAAGGAAACTACGCAGTTGCTGATATACACAAATCCCAGGATGGCAGCAGAGTAACAGGAATGTGTGGGGGTTACTGTGGGAAATGCACTCCGTCCTCCGGCTCTTACCTGCTCATCACAGTGGCCTAAATCTACAGTGTTTAACCAGCTCTCTTCAAGCCAAGATGTCCAACCTCTCAGTGGTGCTACAGTAATGAGGATTCCATCCTCCAAATGACCTCTATTCCCTCCAATGTGTAAATATGTCAATAGAACAGGTGTAAGTACTGTACATAACATGGTAAATGACttatttattatactatatactcaacatttatttttgtattgtaaGATAATTTAAGGATTGTGTTTTCTTTCTTGCAACAAACACCATGGACATCTATTCGCATTGCATTAACTAGAACATAAAAATGTGCcttagaaatatttaacataTTCAGTCCAGAGTagttgcttgtgtttcttgcgTTGTTGTGTCTCTCATATTGTGGCAGTGTTGCAGCCTGGCTCTTCTATGTCTTAAGATGCAGAAGGAGACTGTCAGTTCTGCTTCACGTTTGTGTGTACGGACGTGGGCACTTTGTATGTACTTCCTTTTTTACACTCGTAGCTGTGTTACGGTCTCGGCATCTTATGCCGTGTGGTGTCACTATCCAACCTTGTTCAGTGCCTGAGTGTTTATCAACCAGTGTAGTAAGTGCTACTGTATGTTCCTACCTGGGTCTTAGAGTGTGAAGGCTGTTTAGGCTGTTCTAATTACCTGGTCTACACAGTCGCCAGCGGTGATCAGTGGGCTGGTGCATTAGTCAGGTgtggtacagagacagagacagagacggcaCAGAGACGGTGTAGTGAACCGTAGCGCAGCGTGCTGTAAAGGTCGACCTGGGACAGCCAGGGGGAATGCTGGTGCTGTCGAGGCTAGCACAGGCAGCTGCTGCAGAGGCAGACCCAGCCAGGTGTTACTACCACAGAGGAACAACCCTGAGATGGGCCAtatgcagagaggaatgggaatgAGTGCTTTAAAGAGATAGCCATCCCTGTAAAGTTGAGGAGTTCAAGAATTCAGCAGCAGggaaaattgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaacccctgCCTTGGTGGGACATACTTGAATATTTTTGCTGAGAGAGAAAAGTGAATGACATGAAAGTTGTGATGCAGAACCTTAACATTTCATACTTATCCGTGGAAGTACAAGGTGTCACCTACCCAGAGGGAGTGTGTCAGGGGAATAGACAGTGGAGTGGCCCCGGGGGCTTTAAGGTCAGAGcagagacacagctagaggaggagagggaggaaaggctTGCAGGCTGATAGATCCAGAGAGATGTGCTTCAAAGCATCAGAAAGACTCACCTTTTGTTTGTTCTGGGTCTCTCAGGTGTTGTGACAGGGAATAGCCGTTATTCCTTAGTTTTGAGAAAGAGGCCGTATTCCCATGGCTATAACTACATGAATCAAGCAGAGTTTACCTCAGGCCTATAACAACACCAGTGCTCCATAGAGATTGGTTGATGTCTTAAAGGTGTAGGTGTCCAAATGCTGCCTCTAAGAACTGCTTACTGTACCTCCACTCAAACAACGTAGCTTTTTTCTCAGCCTTTATCTTATTGCCTTTCAACAGTTAGTCCATTTTTCTGCTGTCTGATGTAAGTGTTTTGACAATATCAGGGTACTTTCTGTTTGAATGTGTGTTTTCTTTATCTTATATACTGTTTGCAACCAATGCCCttcattagatttttttttataagacTTTTATAGAAAGTGAATGACaaataataataactataataatttGTATGATTCTTTTGACATGATAAGATACATATCCCAAAATGAATAACGTAAGTGACTGTGATGTTGTAAGGAAGTTTAGTATATCACCTTACTGTACACATATGAGGTTATTCTCGTGTGTATTTATTTGTTTGACAGGGTTTGGCGGGGTGGATGGACATTGGTACCTGAGATAGATTCAGAGGACAAAGCCATATTTGCTACATTTGCCTTATAAATGATGCCTTGAGAATATCAGCAGGACATTTTCATGACGGTGCAACTCTTACTTTGTCATGGTTCCATCCAACCTTTCGCTAAAAGGGAATTCCACACCGTTGTAACCGATAGCCATTCTGAATTTATCTTTGGAATCATATTAGTTTAGATTTAATGAAGTAAAAAATGTTAACTGTTAACGTTAAATGTTTTATTGTCCAAATAATATCCTCCAGTGAAAAGGGATTGAAACTTTAGTCTGATTGTGAATATCTGATGATCCAGATTGTATATGTATTCTCAGGTGTTAAAATAAAGGGATTAGTTGAACATTATATTATGTCTTATATTTATGTAACaatttataaactcagcaaaaaaagaaacgtcctctcactgtcaactgcatttattttcagcaaatgtaACATGTGtagatatttgtatgaacataagattcaacagctgagacgtaaactgaaca
>TU704939
agagagagagagagaacccctgCCTTGGTGGGACATACTTGAATATTTTTGCTGAGAGAGAAAAGTGAATGACATGAAAGTTGTGATGCAGAACCTTAACATTTCATACTTATCCGTGGAAGTACAAGGTGTCACCTACCCAGAGGGAGTGTGTCAGGGGAATAGACAGTGGAGTGGCCCCGGGGGCTTTAAGGTCAGAGcagagacacagctagaggaggagagggaggaaaggctTGCAGGCTGATAGATCCAGAGAGATGTGCTTCAAAGCATCAGAAAGACTCACCTTTTGTTTGTTCTGGGTCTCTCAGGTGTTGTGACAGGGAATAGCCGTTATTCCTTAGTTTTGAGAAAGAGGCCGTATTCCCATGGCTATAACTACATGAATCAAGCAGAGTTTACCTCAGGCCTATAACAACACCAGTGCTCCATAGAGATTGGTTGATGTCTTAAAGGTGTAGGTGTCCAAATGCTGCCTCTAAGAACTGCTTACTGTACCTCCACTCAAACAACGTAGCTTTTTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609619.2 False 8583 mRNA 0.51 40 50880298 50957676
TU704939 True 529 lncRNA 0.46 1 50956262 50956790

Neighbor

gene id symbol gene type direction distance location
magi1b LOC106583030 coding upstream 81671 50597192 ~ 50798627 (+)
LOC110527968 LOC106612786 coding upstream 258904 50617230 ~ 50621394 (+)
LOC110527965 LOC106583032 coding upstream 441632 50390538 ~ 50438666 (+)
LOC110527962 LOC106583035 coding upstream 650647 50099564 ~ 50229651 (+)
tafa4b LOC106583040 coding upstream 1260104 49571790 ~ 49620194 (+)
LOC110527970 LOC106583026 coding downstream 6416 50960494 ~ 51079129 (+)
psd6 psd6 coding downstream 135596 51093272 ~ 51097448 (+)
thoc7 thoc7 coding downstream 194374 51152050 ~ 51158063 (+)
LOC110528964 LOC106565849 coding downstream 294447 51252123 ~ 51418349 (+)
LOC110527974 LOC106583021 coding downstream 471954 51429630 ~ 51433065 (+)
G619597 NA non-coding upstream 29915 50850134 ~ 50850383 (+)
G619590 NA non-coding upstream 35383 50844715 ~ 50844915 (+)
G619198 NA non-coding upstream 118560 50761277 ~ 50761738 (+)
G619112 NA non-coding upstream 397727 50482264 ~ 50482571 (+)
G619085 NA non-coding upstream 437764 50442252 ~ 50442534 (+)
G619769 NA non-coding downstream 39905 50997581 ~ 51037048 (+)
G619775 NA non-coding downstream 50579 51008255 ~ 51008722 (+)
G619890 NA non-coding downstream 130343 51088019 ~ 51088431 (+)
G619953 NA non-coding downstream 232146 51189822 ~ 51191983 (+)
G619981 NA non-coding downstream 292511 51250187 ~ 51251536 (+)
G618712 LOC106583033 other upstream 576066 50303430 ~ 50304232 (+)
G617133 NA other upstream 2053071 48826827 ~ 48827227 (+)
G615624 NA other upstream 3040576 47839388 ~ 47839722 (+)
LOC110528958 NA other upstream 4242344 46629591 ~ 46638492 (+)
G621650 NA other downstream 1433672 52391348 ~ 52391633 (+)
G621695 LOC106582949 other downstream 1533492 52491168 ~ 52493240 (+)
G623180 NA other downstream 2796230 53753906 ~ 53754119 (+)
G624628 NA other downstream 3865961 54823637 ~ 54824199 (+)

Expression


Co-expression Network