psd6 (psd6)


Basic Information

Item Value
gene id psd6
gene name psd6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 51093272 ~ 51097448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608244.2
ACGAGGGCAGCACGTTCTCATCGCGTCACGTCTGACGTTCTCAACTCGGCGGCGTACAGCGGAAGTGGCAGACCAGTGTTTTCCCAAGTCATTGTCCGCAAACTAGCAGAAGATACCTGACATTGTTGTCACAAACAGAAAATATCTGCGCTCATTACTTTGCTTTTATACTAGACAAAATGCCGTTGGAAAACCTGGAAGAAGAGGGTCTGCCTAAAAACCCCGATCTTAGGATAGCACAGCTGAAATTTTTGCTCACGATGGACGGTCACCGACAAGATGATAAAGTTAAAACTGAGCTCATGGACTCGATCAAAGAGAACAATATGGCACCTTACTATGAAAGCCTGTGTAAAGACCTGAAGTGGCAACTTGACACAGACCTGCTGAATAAGATGAAGAAGGCCAACGAGGACGAGCTGAAACGCCTGGATGATGTCCTGGAAGATGCAGAGAAGAACCTCGGGGAGAGTGAAATCCGAGATGCAATGATGGCTAGAGCTGAATATCTCATCCGAATCGGGAATAAAGAGGACGCTTTGACTGCCTTCAGGAAGACCTTTGATAAGACTGTGGCCCTGGGACATCGACTAGACATTGTGTTCTACCTGCTAAGGATTGGACTGTTCTATATGGACAGTGACCTCATCACACGCAACACTGAGAAAGCTAAAAGCCTTATTGAGGAGGGGGGTGACTGGGACAGGAGGAACCGTCTCAAGGTGTACCAGGGCCTGTACTGTGTGGCCATCCGTGACTTTAAACAGGCTGCTGAGCTCTTCCTGGACACAGTGTCTACCTTCACCTCCTATGAGCTCATGGATTACAAGACCTTCGTCACGTACACTGTCTACGTCTGCATGATTGCCCTGAAGAGGCCCGACCTCAGAGAAAAGgtgATAAAGGGAGCAGAGATCCTGGAGGTGCTGCACAGTCTCCCTGCTGTCCGCCAGTACCTCTTCTCCCTCTACGAGTGTCGCTACTCTGTCTTCTTCCAGTCACTGGCCACGGTGGAGCAGGATATGAAGAAGGACTGGTTGTTTGCCCCTCACTACCGTTACTACGTGAGGGAGATGCGTATCCATGCTTACAGCCAGCTCCTGGAGTCCTACCGCTCACTCACCCTGGGCTACATGGCTGAGGCCTTTGGAGTCAGTACAGAGTTCATTGACCAGGAACTCTCCCGATTCATAGCTGCTGGTCGCCTCCATTGCAAAATCGACAAAGTAAACGAGATTGTGGAAACCAACAGACCTGATAGCAAGAATTGGCAGTACCAGGAGACAATCAAGAAAGGGGACCTACTGCTCAACCGTGTCCAGAAACTGTCCCGAGTTATTAACATGTAACATGGGGTGCAGCGTTACCTTTGGGAGGGAGATCTGGCGTTTCCCTGTTGTATCAGTATCCACACCAGTAGTTTGTCTGAAGAAGCGACCCTTATTGTGTATATAATAAATTCTTTTTGGTGACTTCTTCTTTTCCTTTGATACACACATGGATGAAAGTGATTACTGAAATAAAACCACTTCAGTAaagaaa
>NM_001165054.2
GGCAGACCAGTGTTTTCCCAAGTCATTGTCCGCAAACTAGCAGAAGATACCTGACATTGTTGTCACAAACAGAAAATATCTGCGCTCATTACTTTGCTTTTATACTAGACAAAATGCCGTTGGAAAACCTGGAAGAAGAGGGTCTGCCTAAAAACCCCGATCTTAGGATAGCACAGCTGAAATTTTTGCTCACGATGGACGGTCACCGACAAGATGATAAAGTTAAAACTGAGCTCATGGACTCGATCAAAGAGAACAATATGGCACCTTACTATGAAAGCCTGTGTAAAGACCTGAAGTGGCAACTTGACACAGACCTGCTGAATAAGATGAAGAAGGCCAACGAGGACGAGCTGAAACGCCTGGATGATGTCCTGGAAGATGCAGAGAAGAACCTCGGGGAGAGTGAAATCCGAGATGCAATGATGGCTAGAGCTGAATATCTCATCCGAATCGGGAATAAAGAGGACGCTTTGACTGCCTTCAGGAAGACCTTTGATAAGACTGTGGCCCTGGGACATCGACTAGACATTGTGTTCTACCTGCTAAGGATTGGACTGTTCTATATGGACAGTGACCTCATCACACGCAACACTGAGAAAGCTAAAAGCCTTATTGAGGAGGGGGGTGACTGGGACAGGAGGAACCGTCTCAAGGTGTACCAGGGCCTGTACTGTGTGGCCATCCGTGACTTTAAACAGGCTGCTGAGCTCTTCCTGGACACAGTGTCTACCTTCACCTCCTATGAGCTCATGGATTACAAGACCTTCGTCACGTACACTGTCTACGTCTGCATGATTGCCCCTCACTACCGTTACTACGTGAGGGAGATGCGTATCCATGCTTACAGCCAGCTCCTGGAGTCCTACCGCTCACTCACCCTGGGCTACATGGCTGAGGCCTTTGGAGTCAGTACAGAGTTCATTGACCAGGAACTCTCCCGATTCATAGCTGCTGGTCGCCTCCATTGCAAAATCGACAAAGTAAACGAGATTGTGGAAACCAACAGACCTGATAGCAAGAATTGGCAGTACCAGGAGACAATCAAGAAAGGGGACCTACTGCTCAACCGTGTCCAGAAACTGTCCCGAGTTATTAACATGTAACATGGGGTGCAGCGTTACCTTTGGGAGGGAGATCTGGCGTTTCCCTGTTGTATCAGTATCCACACCAGTAGTTTGTCTGAAGAAGCGACCCTTATTGTGTATATAATAAATTCTTTTTGG

Function

NR:

description
26S proteasome non-ATPase regulatory subunit 6

GO:

id name namespace
GO:0070306 lens fiber cell differentiation biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0000502 proteasome complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608244.2 False 1542 mRNA 0.48 8 51093272 51097448
NM_001165054.2 True 1226 mRNA 0.48 7 51093338 51097375
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110527970 LOC106583026 coding upstream 14143 50960494 ~ 51079129 (+)
LOC110527969 LOC106583028 coding upstream 135596 50880298 ~ 50957676 (+)
magi1b LOC106583030 coding upstream 294645 50597192 ~ 50798627 (+)
LOC110527968 LOC106612786 coding upstream 471878 50617230 ~ 50621394 (+)
LOC110527965 LOC106583032 coding upstream 654606 50390538 ~ 50438666 (+)
thoc7 thoc7 coding downstream 54602 51152050 ~ 51158063 (+)
LOC110528964 LOC106565849 coding downstream 154675 51252123 ~ 51418349 (+)
LOC110527974 LOC106583021 coding downstream 332182 51429630 ~ 51433065 (+)
si:ch211-236d3.4 LOC106583019 coding downstream 1347671 52445119 ~ 52489548 (+)
LOC110527978 LOC106565857 coding downstream 1413822 52511270 ~ 52548815 (+)
G619890 NA non-coding upstream 4841 51088019 ~ 51088431 (+)
G619769 NA non-coding upstream 56224 50997581 ~ 51037048 (+)
G619775 NA non-coding upstream 84550 51008255 ~ 51008722 (+)
G619597 NA non-coding upstream 242889 50850134 ~ 50850383 (+)
G619953 NA non-coding downstream 92374 51189822 ~ 51191983 (+)
G619981 NA non-coding downstream 152739 51250187 ~ 51251536 (+)
G620230 NA non-coding downstream 336833 51434281 ~ 51435206 (+)
G620252 NA non-coding downstream 348893 51446341 ~ 51446574 (+)
G620282 NA non-coding downstream 388468 51485916 ~ 51487101 (+)
G618712 LOC106583033 other upstream 789040 50303430 ~ 50304232 (+)
tafa4b LOC106583040 other upstream 1473104 49571790 ~ 49620194 (+)
G617133 NA other upstream 2266045 48826827 ~ 48827227 (+)
G615624 NA other upstream 3253550 47839388 ~ 47839722 (+)
G621650 NA other downstream 1293900 52391348 ~ 52391633 (+)
G621695 LOC106582949 other downstream 1393720 52491168 ~ 52493240 (+)
G623180 NA other downstream 2656458 53753906 ~ 53754119 (+)
G624628 NA other downstream 3726189 54823637 ~ 54824199 (+)
G624962 LOC106582975 other downstream 3949848 55047296 ~ 55052688 (+)

Expression

psd6(psd6) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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psd6(psd6) Expression in each Bioproject

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psd6(psd6) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network