LOC110527973 (synpr)


Basic Information

Item Value
gene id LOC110527973
gene name synpr
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 51179203 ~ 51207209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609629.2
CAAAATGATGCATGATTAATAAGATATATTTTTCTACTTATACGACCAGACTAATGCGTGGCGCCTCGAGACGACATTCAGGCACTCAGTTACAATCACATCCTCTCATCCATTTCCGACGTGGGGAGGAGAGGCAGTTCAAACAATAAACACATCGTAGCCTAAATCGATAACAAAAAAATCTTATCCAATCGTAAAATATTGAAGCCATCGTTCATTTCCGTGAAGCCAATCCCCGTCTGTCTCTATGGTGTTTTATTTTTCAACAAGCTGACGAAAGCTCGGGTTTTTCCGTGTAGTAGCAATAAGAGCCGAGAGTCTTACACGCGCGAGGCATAGACATCAAGCGGTTTGGGTAACTCTGTACAATTGTTTTCTCTTACTGAACAAGGAGATAGGTATTTTGACAATGTTATCAGCTAATGAGCTCGTGTCTGTTGGGACATTTCAAGTGCTTAAATTACCTCTTGGATTTATCCGTGTTTTGGAATGGcttttttcaatttttgcatTTGCGACATGTGGAGGCTACAGTGGACAGCTGTGGGTTAGTGTGGACTGCCAGCTTGACAAGGCCAGCAGCAACCTCAGTATTGGCATCGATTTTGCCTACCCTTTTAGGTTGCACCAGGTGTCCTTCGAGGCTCCGCTgtgtgaggggaggaggagggagaggctcTTTCTCATCGGGGACTACACTTCCTCGGCTGAGTTCTTTGTCACCATCGCTGTGTTCGCCTTCCTCTACTCCTTCATGGCCACCATAGTCTACATCTTCTTCCAGAACAAGTACCGCGAAAATAACCGAGGCCCTCTGATCGACTTTATAGTGACCGTGGTGTTCTCCTTCATGTGGCTGGTCAGTTCTTCAGCCTGGGCTAAAGCCCTGTCGGACATCAAGGTGGCCACAGACCCAGATGAGGTGCAGGAGCTCATGTCTGCCTGTAAGGTCATGACCAACAAGTGTGGCTCAGTGCAAGGACCCCGCTGGTCAGGCCTCAATACCTCTGTGgtGTTTGGCTTCCTAAACTTCGTCCTGTGGGCAGGAAACATCTGGTTTGTCTTCAAGGAGACTGGTTGGCATAAAGGAGGACCAGCTCGGTACGCTGGAGCGCCTCCCGAAAAACAGGCTGAGACAATCAACCAGCAGCAGCCCTACAACCAGGGCAGTTTTGACCAGTCAGGAGGCTACAGCGCCCAGGGAGACCAGGAGCAGGTATCAGAATACAGTCCTGTGGGCGGGCCCACCTCCTACTCCAATCAGATGTAGCTTTGCAGTCTGATTGTCACACTGAAGGTGGGGGGGGACATGCAGTTCTTAGGTAGAAATATTCTGGTGCCAGAAAAAGTAAGTTGTCGATTGGTACAGTTAAACAGAAGTATTTTGGAGTATTGTACATAAAACTAGATTTTGGTTACGTTTTTAGATGTGTTGTCCTGAATGTTGTATTGCCTGTGTGTTGAGTCTGTTGATAGTTTCTCATTTTCTGTGCTAGGTGCTATGCCACAGAACCTTTTAACTGGATGTCTTTTTCATTGTGGAAGAAAAATGTGGTATACAATTGTATAATTCTTGAAGTTTCCTACATAGTGTTGACAAAGTGCATGCAGTTGTGCTATGTGTTACTATGCCTGTTTGTGCACATTGTATTTACGAAACCAGCAGGATTTCATCTCAGAGTTACAGTAAGGTATCAGCAGTAGTTTTACCTCACAAacgcaacatttaaagtgttgttCTAATTtttcatgagcagaaataaaatatcccaataattttccatatgcacaaaaagcttatttctcttacaattttctgcacaaatttgtttacatccctgttagtgagcatttctcctttgtcaaggtAATCCTGCATGCAGGGTTTATGTTCAGTGTAGTTACCGTTTCATTACACAAGATGCCCTTGCTCTAAAGGGGCTTTATGTGTTGGTTTGTGGGAAGTTTCTGATGTTAGTGTTAACAATTGTAAATGGGAAAAGTGTTTCTACCCGCTCTGTTTACAAATGGTCGCTCATGATTCAAATGAAAGGACTAGTTTTTTAAGCTGCTGTCAGACTACTGTGAAATGAAGAATCATTTCATACACCTCCGAGAGCGAGCTGGCTGAGTCCATTTAAGCACAAGGCCCCAGTGAAAATGGCCCAGAAGAACCTAGTTGCAATTAGAACAGTCAGCTCGGCCAAGCTGGTCTGTATAACCATTAGTGAACCCCTTCCATTTTCTCTGTCATGTTTTCTCTGTCTTGAATTCTATAAACAAATTAATTCAGGTTTCTATGACTTTCAAAAGTTTGTGCAATTAATAAAAATAGGCTAAATTAGAGAATGTCTGataatattgatgatgatgatgacgatgatgatgatgatgataattaaTTAACCCTGTGTCTTGAGCTCCAAAGCATGTGGCTTGCATTAACCTGGtaacaaaaaaatatgaaaaaaattcAAATAATTAAACGTCCATGTATGTACTTCCCTTCTGTCCGTGTAACATTAGAATGTGAACAATCTGAAAACCACTTACCAGCATTATTATTCTGTTCAAGATTACTGAGTGTGGATGATATACAAGCAATTTGAATAATCCTAATAAAGATGTtacacaaaaaacaaaaa
>XM_036983469.1
ATGTAACCTACAAAATGATGCATGATTAATAAGATATATTTTTCTACTTATACGACCAGACTAATGCGTGGCGCCTCGAGACGACATTCAGGCACTCAGTTACAATCACATCCTCTCATCCATTTCCGACGTGGGGAGGAGAGGCAGTTCAAACAATAAACACATCGTAGCCTAAATCGATAACAAAAAAATCTTATCCAATCGTAAAATATTGAAGCCATCGTTCATTTCCGTGAAGCCAATCCCCGTCTGTCTCTATGGTGTTTTATTTTTCAACAAGCTGACGAAAGCTCGGGTTTTTCCGTGTAGTAGCAATAAGAGCCGAGAGTCTTACACGCGCGAGGCATAGACATCAAGCGGTTTGGGTAACTCTGTACAATTGTTTTCTCTTACTGAACAAGGAGATAGGTATTTTGACAATGTTATCAGCTAATGAGCTCGTGTCTGTTGGGACATTTCAAGTGCTTAAATTACCTCTTGGATTTATCCGTGTTTTGGAATGGGTTGCACCAGGTGTCCTTCGAGGCTCCGCTgtgtgaggggaggaggagggagaggctcTTTCTCATCGGGGACTACACTTCCTCGGCTGAGTTCTTTGTCACCATCGCTGTGTTCGCCTTCCTCTACTCCTTCATGGCCACCATAGTCTACATCTTCTTCCAGAACAAGTACCGCGAAAATAACCGAGGCCCTCTGATCGACTTTATAGTGACCGTGGTGTTCTCCTTCATGTGGCTGGTCAGTTCTTCAGCCTGGGCTAAAGCCCTGTCGGACATCAAGGTGGCCACAGACCCAGATGAGGTGCAGGAGCTCATGTCTGCCTGTAAGGTCATGACCAACAAGTGTGGCTCAGTGCAAGGACCCCGCTGGTCAGGCCTCAATACCTCTGTGgtGTTTGGCTTCCTAAACTTCGTCCTGTGGGCAGGAAACATCTGGTTTGTCTTCAAGGAGACTGGTTGGCATAAAGGAGGACCAGCTCGGTACGCTGGAGCGCCTCCCGAAAAACAGGCTGAGACAATCAACCAGCAGCAGCCCTACAACCAGGGCAGTTTTGACCAGTCAGGAGGCTACAGCGCCCAGGGAGACCAGGAGCAGGTATCAGAATACAGTCCTGTGGGCGGGCCCACCTCCTACTCCAATCAGATGTAGCTTTGCAGTCTGATTGTCACACTGAAGGTGGGGGGGGACATGCAGTTCTTAGGTAGAAATATTCTGGTGCCAGAAAAAGTAAGTTGTCGATTGGTACAGTTAAACAGAAGTATTTTGGAGTATTGTACATAAAACTAGATTTTGGTTACGTTTTTAGATGTGTTGTCCTGAATGTTGTATTGCCTGTGTGTTGAGTCTGTTGATAGTTTCTCATTTTCTGTGCTAGGTGCTATGCCACAGAACCTTTTAACTGGATGTCTTTTTCATTGTGGAAGAAAAATGTGGTATACAATTGTATAATTCTTGAAGTTTCCTACATAGTGTTGACAAAGTGCATGCAGTTGTGCTATGTGTTACTATGCCTGTTTGTGCACATTGTATTTACGAAACCAGCAGGATTTCATCTCAGAGTTACAGTAAGGTATCAGCAGTAGTTTTACCTCACAAacgcaacatttaaagtgttgttCTAATTtttcatgagcagaaataaaatatcccaataattttccatatgcacaaaaagcttatttctcttacaattttctgcacaaatttgtttacatccctgttagtgagcatttctcctttgtcaaggtAATCCTGCATGCAGGGTTTATGTTCAGTGTAGTTACCGTTTCATTACACAAGATGCCCTTGCTCTAAAGGGGCTTTATGTGTTGGTTTGTGGGAAGTTTCTGATGTTAGTGTTAACAATTGTAAATGGGAAAAGTGTTTCTACCCGCTCTGTTTACAAATGGTCGCTCATGATTCAAATGAAAGGACTAGTTTTTTAAGCTGCTGTCAGACTACTGTGAAATGAAGAATCATTTCATACACCTCCGAGAGCGAGCTGGCTGAGTCCATTTAAGCACAAGGCCCCAGTGAAAATGGCCCAGAAGAACCTAGTTGCAATTAGAACAGTCAGCTCGGCCAAGCTGGTCTGTATAACCATTAGTGAACCCCTTCCATTTTCTCTGTCATGTTTTCTCTGTCTTGAATTCTATAAACAAATTAATTCAGGTTTCTATGACTTTCAAAAGTTTGTGCAATTAATAAAAATAGGCTAAATTAGAGAATGTCTGataatattgatgatgatgatgacgatgatgatgatgatgataattaaTTAACCCTGTGTCTTGAGCTCCAAAGCATGTGGCTTGCATTAACCTGGtaacaaaaaaatatgaaaaaaattcAAATAATTAAACGTCCATGTATGTACTTCCCTTCTGTCCGTGTAACATTAGAATGTGAACAATCTGAAAACCACTTACCAGCATTATTATTCTGTTCAAGATTACTGAGTGTGGATGATATACAAGCAATTTGAATAATCCTAATAAAGATGTtacacaaaaaacaaaaa

Function

symbol description
synpr Predicted to be located in membrane and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in synaptic vesicle membrane. Is expressed in epiphysis; female organism; forebrain; and male organism. Orthologous to human SYNPR (synaptoporin).

NR:

description
synaptoporin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609629.2 False 2645 mRNA 0.42 6 51179203 51207199
XM_036983469.1 True 2527 mRNA 0.42 5 51179203 51207209

Neighbor

gene id symbol gene type direction distance location
LOC110527971 LOC106583024 coding downstream 27183 51097457 ~ 51152020 (-)
LOC118965295 NA coding downstream 88039 51087289 ~ 51091164 (-)
LOC118965294 NA coding downstream 239239 50937209 ~ 50939964 (-)
LOC110528963 NA coding downstream 638618 50509424 ~ 50540585 (-)
LOC110527964 LOC106583033 coding downstream 872925 50300364 ~ 50306278 (-)
ptprga LOC106583020 coding upstream 241822 51449031 ~ 51726478 (-)
LOC118965403 NA coding upstream 1246630 52453839 ~ 52453893 (-)
camk1b LOC106583015 coding upstream 1376580 52583789 ~ 52658755 (-)
spcs1 spcs1 coding upstream 1462243 52669452 ~ 52672489 (-)
gnl3 LOC106583012 coding upstream 1484132 52691341 ~ 52696843 (-)
G619876 NA non-coding downstream 100114 51077886 ~ 51079089 (-)
G619833 NA non-coding downstream 142142 50997573 ~ 51037061 (-)
G619732 NA non-coding downstream 223006 50955464 ~ 50956197 (-)
G619688 NA non-coding downstream 285387 50887023 ~ 50893816 (-)
G619602 NA non-coding downstream 326410 50852492 ~ 50852793 (-)
G620130 NA non-coding upstream 43147 51250356 ~ 51250574 (-)
G620236 fezf2 non-coding upstream 224237 51431446 ~ 51432983 (-)
G620237 NA non-coding upstream 226133 51433342 ~ 51433733 (-)
G620500 NA non-coding upstream 305001 51512210 ~ 51512411 (-)
G620503 NA non-coding upstream 306912 51514121 ~ 51515552 (-)
G619733 NA other downstream 220663 50956271 ~ 50958540 (-)
LOC110527961 LOC106565835 other downstream 1242922 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 1881955 49295040 ~ 49297305 (-)
G617632 NA other downstream 1983233 49195604 ~ 49195970 (-)
G622985 NA other upstream 2098327 53305536 ~ 53322831 (-)
G625426 NA other upstream 3865270 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 3957283 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 4226247 55420466 ~ 55566988 (-)
G627254 NA other upstream 5484114 56691323 ~ 56696091 (-)

Expression


Co-expression Network