ptprga (LOC106583020)


Basic Information

Item Value
gene id ptprga
gene name LOC106583020
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 51449031 ~ 51726478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983482.1
TAAAGTCTCTGCCAGACTTTGGCACAGACGCtacttcctggatggaggaatggaACACTTCCAGTGCCGCTCCaactattctctctctgttttcgcCAGCAGAACCGCTGCAGCTCTCCGCTGCATGGACTACTGCCACTAGCGTCCTCTGCTCCTATCTATTCTATCCTTGATAAATGAACTGATTGAAGCTCGAAAGCTATATCTCTACTAACTGACATGTTCTTTTTGGGGAGTATCAAGAAGCTGTTTGGAAGGAGGTTTTGAGAAGTAAATACTATTTTCTGGACGTTCCAGACCCGCACTGAATTTCACTGAACAGTCACTAGCCTACATTTAGCAGCATTTGCGCTGCTTTTTACGCAGCAGACATAGATTTTTTGATCAGACGGATAACTCAACAGTTGCCCTTTTTGCTCTCGATGTTCATTTTGTCATGCGGAGGCTACTGCAATCGTGTTGCTGGTGGATCTTGTCTCTGATTTTGTCTGCCTTCGTGCTCTTCTGGGCCGACTGTCATCCTGCGCTGACAGGAGGGCAGCCTGGGGCCACGCAAGGGAGCCAAGATGGCCGAGTGCCTGGGACCAGACTCAGGAGAGCGGCTGAGGAGTCCTACTGGGCctactcagGTACGTACGGGCCAGAGGAGGGCTGGTCATCAGCCTACCCAGAATGCAGACAGAGGAACCAGTCACCAATCAACATCGTAGACCAGGACACAAAGGTGTCCATGGAGTATCAGGAGCTCACTCTGGATGGATTTGACACAGAGTCCTCCAACAAGACCTCAATGAAGAACACTGGTAAAACAGtggccATCATGCTGAAGGATGACTACTTTGTGCGTGGTGCAGGCCTACCGGGGCGTTTTAAGGCTGAGAAGGTGGAGTTCCACTGGGGCCAGAGTAATGGATCAGATGGCTCTGAACACAGCATCAACGGCAGGAGGTTCCCAgtggagatgCAGATCTACATGTATAACTCGGATGACTTTGACAGCCTCAGTGCTGCCATGCGGCAGAAGAGGATCATTGCAGCGATGTCGGTCTTCTTTCAGGTGGGACTGAAGGACAACCCAGCAGTGGACCCCATTATCCATGGCCTGAGGGGCGTAGTCCATCATGAGAAAGAAACCTTCCTGGAGCCCTTTGTTCTGAGGGATCTGTTGCCGTCATCGTTGGGCGGTTACTATCGCTACACAGGCTCTCTCACCACCCCACCCTGCAGCAAGGTGGTAGAGTGGATCGTCTTCAACAGACCTGTGTTCCTCTCCTACAAACAGCTGGAGGCGTTCTACTCCATCTTTACCACAGAGCAGCAGGACCATGTGAAGTCTGTGGAATACCTGAGGAGCAACTTCCGGCCAATCCAAAGCCTTGACAACCGTGACGTCTTCAAGTCCGCAGTCAGAGATGCCTGGCTACCTGACCTGATGGACAGCCTGGGCAACCCGTACGGAACGGAGGCATCCAAAGtgtgcaGCAGTGCTCCCATCAACATGAAGGTGCAGCATCTGAACCGCACGGCCCTGGTGGTGCGATGGACCCGGCCAGAGTTCACCTACCACCCGCCAATCATCTCCTTCCTCATTTCCTACAGCTGGACCAAACACGATGAGTCCTACGAGGAGACACACGTCACCGACAGCCAAAACAAACTGGAAGCTGTCATCACTCCGGTGTCTCCTGACGTGCTGTACCTGTTCCGGGTGCAGGCTGTGTGTATGAGCGACATGCGCAGTGACTTCAGCCAGAGCATGCTCTTCAGAGCTAACACCACCAGGATATTTGAAGGAACAAGGATAGTGAAAACAGGGATGCCCACCGTCTCTCCGGCCTCTTCAGCTGACATGGCTCCCATCAGCTCCGGCTCCTCCACCTGGACCTCCTCCGGCCTCCCTTTCTCCTTCGTCTCCATGGCGACGGGCATTGGCCCGTCCTCCAGTGGTAGCCAGGCGACGGTGGCGTCCGTGGTGACCAGTACCCTCCTGGCTGGGCTGGGGTTCAGTGGTGGGGTCATCTCCTCCTTCCCTAGCTCTGTGTGGCCGACCAAAGCCCCCGCCTCCAGACAGAATCCCACCACGGCCCCCCCTCGACAGCCCACCACCGAACCTGCAGCCGGCCAGAGTGCTGACGCAGCCAAAGATAACGGAGAGGGAGCTGAGGACAGGGAGAAAGGTGCAaaaagtgagggagaggagggagagaaggaaggagaggaggataaggaggaagatgaggaggagaaagaaaaggagacGAAAGAGAAGAAAGTGACATTGGCGGACAAGGTAGAGAAGCAGACGAACAGCACGGTGGTGAAGGAGCCGCCCACGGCCGCCCCAGCCTCGACTGctaaagagaaaggaagagaagcaGGGGAGAATAACACCTGCAGCACTACGCCCTCTCGTGCTGTGGAGGACCcgttggtgacacacacacagagcgcggTGGAGACAGACACATTGGTGCCCCCTACCATGGAGCCAGGGAATGACCCGGCAGAGTTCCCCGCCCCAGACAACCCCTCCCCAACTCTCAGACCTAGCACAGGAGGGAACAAGAGTCACTGGCCTTTCTCCATACACACAGAGAGGACAAGCTTGTCCAACCTGACCCGGCAGGGTGCCCCCGGGGTGGGCAGGATGGAGTGGATCATCCCCCTGATGGTGGTCTCTGCCCTCACCTTCGTCTGCCTCAGCCTGCTGCTCGCCGTGCTCGTCTACTGGAGgaggtgTTTCCAGACAGCTCATTTCTACGTGGAAGACAGTAGCTCTCCTAGAGTAGTGCCCAATGAGAGCATCCCTGTCATTCCAATCCCAGATGACATGGAGGCCATCCCTGTCAAGCAGTTCATCAAACATATCTCAGAGCTCTACTCCAACAACCAGCATGGCTTCTCAGAGGACTTTGAGGAGGTGCAGCGATGCACGGTGGACATGAAGATCACGTCGGAGCACTCCAACCATCCAGACAACAAGCACAAGAACAGATACATCAACATCGTGGCCTacgACCACAGTCGGGTGAAGCTACGGCCTTTAGCTGGGAAGGACTCCAAACACAGCGACTACATCAATGGCAATTATGTTGATGGCTATAACAAGCCCAAGGCCTACATCGCGGCTCAGGGCCCTCTCAAGTCCACCTTCGAGGACTTCTGGAGGATGGTGTGGGAACAGAACACTGGTATCATCGTCATGATCACCAACCTGGTGGAGAAAGGGAGAAGAAAATGTGACCAGTACTGGCCCACAGAGAACAGCGAGGAGTATGGAAACATTGTGGTCACACTAAAGAGCACCAAAGTGCACGCTTGCTACACGCTACGACGCTTCACTGTGCGCAATGCAAAAGTAAAAAAGGGTCAGAAGGGGAATCCTAAGGGACGTCAGAGTGAGAGGACagtggttcagtaccactacacCCAGTGGCCTGACATGGGTGTCCCTGAGTACACGCTGCCCGTGCTCACCTTTGTCAGGAGGTCCTCTGCCTCCCAAACCCCAGAGATGGGCCCTATGCTGGTCCACTGCAGTGCGGGTGTTGGCCGGACGGGGACCTACATCGTCATAGACAGCATGCTGCAGCAGATCAAGGACAAAAGCACAGTCAATGTCCTGGGCTTCCTCAAACACATCCGGACCCAGCGCAACTACCTGGTACAAACAGAGGAGCAGTATATCTTCATTCATGATGTGTTGATTGAGGCCATCATGGGGAAGGAGACAGAGGTGTTGTCCAGCCAGCTGCACAGCTATGTCAACAGTATCCTTACACCTGGGGTGGGCGGCAAGACTCGGCTGGAGAAACAGTTTAAGTTGGTGACTCAGTGTAACGCCAGGTTTGTGGAGTGCTTCAGTGCTCAGAAGGAGTGTAACAAAGAGAAGAACCGCAACTCTTCGGTGGTACCCTCGGAGCGAGCGAGGGTGGGGTTGGCACCTTTGCCCGGTATGAAAGGCACAGATTACATTAACGCATCTTACATAATGGGCTACTACAGGAGCAATGAGTTCATCATTACCCAGCATCCTCTGCCCCACACCACTAAAGACTTCTGGCGGATGATCTGGGACCACAACGCacagatcattgtcatgctgccGGACAACCAGGGGCTGGCGGAGGATGAGTTTGTGTACTGGCCGAGTCGAGAGGAGGCCATGAACTGTGAAGCCTTCACTGTCACACTTATCAGCAAAGACAGACTATGCCTTTCTAACGAGGAGCAGATCATCATCCACGACTTCATCCTGGAGGCCACACAGGATGACTATGTGTTGGAGGTGCGTCACTTCCAGTGCCCTAAGTGGCCCAACCCTGACGCTCCCATCAGCAGCACCTTTGAGCTCATCAATGTCATCAAGGAGGAGGCTATGACCAGAGACGGACCCACCATAGTACACGACGAGTTCGGAGCAGTGTCAGCGGGCATGCTTTGTGCCCTCACCACCCTGTCCCAGCAGCTGGAGAGTGAGAGTGCCGTGGGCGTCTATCAGGTGGCCAAAATGATCAACCTCATGAGGCCTGGAGTATTCACAGATATAGATGAGTACCAGTACCTTTATAAAGCTATGCTCAGTCTGATCAGCACCAAGGAGAATGGCTCTGGCTTATGGTCGCTGGACAGAAATGGTACCATGGCCATGTCGGATGAGTCAGACCAGGCAGAGAGCATGGAATCCCTCGTCTGAAGGACCCCACCCACCAGGCCTGAGTGGCCCCAGGCCGTCGCAGAGAGAGAGGCACTTActttgtaaaactgactataagACAATACTTTGAGGCCTTTTTTTGCCAGACTCTTGGTTAAATGAATAACCTGATTACTTTTTTACACTGATAAAAAGTTTTTGATATTTATTTTTTGCCATTTTACGTCTTAATGTTATCCTACTGAACGTTTGCAGCTGCATTTTTGAGTTCACAACAACGAAACACACTTCTGTCTTTCTTGTTTGCACTATAATGTCAGTGTTACTGCCTATACTAAGCTGATGGACTCTGTTCTACTACACTTAAGCTCTGATTTCAACATCCCATGGCAAAACCCTCATTGCTCCGTTTGCTCCCTACTGGCTCATATAAGGAAGAGGAGTGAGAGTGACATAACTTCCTGTTCATATCAATAACCCTTTCAACCTGGTTTCACTACAGTaggcctcttctcctctccccacctctcttcttctctcctctgctcaACCATATGGCTCATATGTCACTCATTTGCTGCCAGACTCAACAGTCTGGTTTCAATCACACCTACAGCCAATAGGGTCATTGGTTCTGTTTGTTTGTTCTTCTTTTATTCGTATCACCTTATCTTCATTATGCATCTTATTAGCAATTCAAACCCATATTTGAATACTGAAGGTGATATTATAACAGCTACTGTGAACCTGTATTGTTTTTTTGTATGATTCATATTATGcttttgaatatatatatatagatatatgtacACATATATGAATATCCTTATCATTATAACTTGTGATTTTGTAGATGTCCGATGTCATGACCTGCCTCTGAGTCCCACTTGATCCAACAGTTTACCACTCTTAGTCAATGCCAGTGTTGATTTTCTGCACACTTACGCCCCCTTCTGGCTCAGTTGTTTTTTTGCTTCTTGCTGCTAATAGTCAACGCAGAGTCATCAAAGTTAGTTAAATTAAGAAATGATGATGCCCTTGTGTGAGTGGAAACTTCTTTGAGAAAATGGATACTCGTGATACAGCCGTTTGCCATTCTCTGTGTCCTGCCTGTTGAATTGATTATTTGGGTGAAGGTATGTTTATAATCCCCCCAGTCCATCCTGAAGCAGGTATGCTCCCACGTCACACGGCCTTGTGTACATAGTTTCTAATCCTCACCGTTGCTTGACTCTGCTTGTGTGTGGTATGATTGTATGCTATGACCGTCGTATGGTTTTGCTCCAGATTCAGTCAGGTGGGAACTTAGTGGCCTAAGCAAGGACAGTTTTACTGTGGTTCAAGGACAGTTTTACTGGAGTCCTAGAGTGATTCACATGAACTCATTGACCCTGTTTTAGTTGTACTCCCAGCACCACCCCTTCATTTCCTGGCAGAATCACTTTAAAAAAGAGAATACCTCCCTTAGTTATCTGAAGGAAAGAGAGACCACCTGTGATTTGCATTTGAAAGAAAATGTGAATGAATTAAACAGCACAATGACCATGCTATTAGAATATTTTGTGTTTGATTATCACAACAAAACATAGAGGATACCTATGATTTGTAACTTTTACCAAAGACTTACTACTAATTTCCGTCAAGAGAaataatagagagagggagagcttatTTCATTTGTGTCTGATTTCCTTTGTCAGTAATGTGTGGGCTgttgactgagtgagtgaggatGTGTGCGTTTTCTTCTGCTTCATTTGGCATCTTTTAGTTTACATGCTGGACTTTCTGCATAAACTCGTCATAACTTGTGTTCGTTCATAAATTCCCTTTGCTACAAGGGGAGATCATTGCAATTTTATTATATCTCAGTTCTGACTCAATTAGTGGAATAATAAAGTAGAGAGATGCATTAA
>TU705850
ctggatggaggaatggaACACTTCCAGTGCCGCTCCaactattctctctctgttttcgcCAGCAGAACCGCTGCAGCTCTCCGCTGCATGGACTACTGCCACTAGCGTCCTCTGCTCCTATCTATTCTATCCTTGATAAATGAACTGATTGAAGCTCGAAAGCTATATCTCTACTAACTGACATGTTCTTTTTGGGGAGTATCAAGAAGCTGTTTGGAAGGAGGTTTTGAGAAGTAAATACTATTTTCTGGACGTTCCAGACCCGCACTGAATTTCACTGAACAGTCACTAGCCTACATTTAGCAGCATTTGCGCTGCTTTTTACGCAGCAGACATAGATTTTTTGATCAGACGGATAACTCAACAGTTGCCCTTTTTGCTCTCGATGTTCATTTTGTCATGCGGAGGCTACTGCAATCGTGTTGCTGGTGGATCTTGTCTCTGATTTTGTCTGCCTTCGTGCTCTTCTGGGCCGACTGTCATCCTGCGCTGACAGGAGGGCAGCCTGGGGCCACGCAAGGGAGCCAAGATGGCCGAGTGCCTGGGACCAGACTCAGGAGAGCGGCTGAGGAGTCCTACTGGGCctactcaggt

Function

NR:

description
receptor-type tyrosine-protein phosphatase gamma-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983482.1 False 6573 mRNA 0.50 29 51449031 51726478
TU705850 True 594 lncRNA 0.50 2 51651618 51726441

Neighbor

gene id symbol gene type direction distance location
LOC110527973 synpr coding downstream 241822 51179203 ~ 51207209 (-)
LOC110527971 LOC106583024 coding downstream 297011 51097457 ~ 51152020 (-)
LOC118965295 NA coding downstream 357867 51087289 ~ 51091164 (-)
LOC118965294 NA coding downstream 509067 50937209 ~ 50939964 (-)
LOC110528963 NA coding downstream 908446 50509424 ~ 50540585 (-)
LOC118965403 NA coding upstream 727361 52453839 ~ 52453893 (-)
camk1b LOC106583015 coding upstream 857311 52583789 ~ 52658755 (-)
spcs1 spcs1 coding upstream 942974 52669452 ~ 52672489 (-)
gnl3 LOC106583012 coding upstream 964863 52691341 ~ 52696843 (-)
LOC118965419 NA coding upstream 965634 52692112 ~ 52692187 (-)
G620237 NA non-coding downstream 15298 51433342 ~ 51433733 (-)
G620236 fezf2 non-coding downstream 16048 51431446 ~ 51432983 (-)
G620130 NA non-coding downstream 198457 51250356 ~ 51250574 (-)
G619876 NA non-coding downstream 369942 51077886 ~ 51079089 (-)
G619833 NA non-coding downstream 411970 50997573 ~ 51037061 (-)
G620996 NA non-coding upstream 235876 51962354 ~ 51962578 (-)
G621014 NA non-coding upstream 251514 51977992 ~ 51978320 (-)
G621076 NA non-coding upstream 293176 52019654 ~ 52019926 (-)
G621079 NA non-coding upstream 294408 52020886 ~ 52021337 (-)
G621102 NA non-coding upstream 307934 52034412 ~ 52034704 (-)
G619733 NA other downstream 490491 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 1142875 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 1512750 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 2151783 49295040 ~ 49297305 (-)
G617632 NA other downstream 2253061 49195604 ~ 49195970 (-)
G622985 NA other upstream 1579058 53305536 ~ 53322831 (-)
G625426 NA other upstream 3346001 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 3438014 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 3706978 55420466 ~ 55566988 (-)
G627254 NA other upstream 4964845 56691323 ~ 56696091 (-)
G620550 NA non-coding downstream 78597 51572781 ~ 51573021 (-)
G620514 NA non-coding downstream 120386 51531031 ~ 51531232 (-)
G620513 NA non-coding downstream 120851 51530527 ~ 51530767 (-)
G620510 NA non-coding downstream 126599 51524348 ~ 51525019 (-)
G620509 NA non-coding downstream 127324 51524072 ~ 51524294 (-)

Expression


Co-expression Network