si:ch211-236d3.4 (LOC106583019)


Basic Information

Item Value
gene id si:ch211-236d3.4
gene name LOC106583019
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 52445119 ~ 52489548 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983483.1
acacagacacacactacccaGCCGTCTCCttcttactctccctctctttatacaATCTAACTGATAGCATGACCTTGCAATAGTTGAGGTTTGATTTGTGGAGTTATGGATCCCTCCTCAACCAGCCAGGACAGCCAGTCTTGAGGAGCACCTTGTGAACTAGCCTTGTCTGGAGTACAGTACAGCGCCCCTGTCTGTTGTTGTCAGCGTGCCAGAGGGAAAGCTAGGAGGCCCCTCTTCTCTACCATTAATCTGCTCCCTCCCTggagcaggcaggcagggtggACAGAGCAGAGCTGAGGGAGAGCCTGGAGCCTGACCCTTCCTGGAGGAGTAGAAGGACGTAGGTGATGGAGTGGTGAGGGAGACCCAAACTGTGGTGAGGGAGACCCAAAAGAGCCACATCTGGCCGGGCATACAGACCTGTACATGCAGGAGCATGGGGGCATCTTATTCAAAGAAAaaGGCGTACAACATCAACCAACAGCAGCAGCGTGTGAAAAACGGAAAGCACCAGAATGGCGCAGCATCGGCCTATGCGAACCTGCAGTGGGAGCAGCAGCCCAGGCAGGATGGGAGCCACCCACCTCAGGACTACCCTCACAGGGACCAGCCCCCAGTGGCTGACTACACCCCCCAGCCCAATTACATGGAGGGAGATCATGATCTCATCAAGCCCAAAAAGCTCCTTAATCCAGTGAAAGCCTCCAAAAGCCACCAGGACCTCCAACGAGAGCTGCTAATGAGCCATAAAAGgggtggtgttgttggtgtggAATCTAAGCCTGAGCTGCAGCGAGTGTTAGAGGCCAGGAAGAGGGAAAAAGTGATAAAGCAGAGGAAGGAAGAAGATGAGGCCAGAAAGAAGATCTCTCCTCTGGAACAAGAGCTCCTCAAGAGGAAGGATAAGCTAGAAGTGTTGGAGAAGGAGCAGGAAAAACAAGAGGAGACAGTGAAAGCCCCAGAGTTTGTCAAGGTCAAGGAGAACTTGAGACGTACGTCCTTTCACAgtaatggagagaaagaggtgtaGAGAACAAACGGTCCAGGTATACAATTTAGTTAGAATCTGCTGGAGTTTGCACACATGTGTGTATTATACGTGTGAATGGACAAAGAACTGCTGTGATGTGCTCCTCTGACTGCACAACTCAGACACCGGCAAGGAACTTCTACCTGTTACAAGGACTGGTCGACAAGCCATGACACAATGCCTTCACTATCCTACTcagagcagagacacagagagagacagagaaggaaggTTGACTCTGCATTGGGCTACTGTTACAGTCAGTAACATAGGCCAAACTATAGCTGTGACATCTCAATCCAGAGTAACTGGCATGAGTGTGAGGGTCAAAGAGGGGAGCAGCTATTCACTTGTGGACATAGTGTTCCGTATTGCAACGACTCTAGAAATAAAGCCAAAGTGGGTGTTCTTCTACAGTGTCACAGCAGTGGCTACTTTTTATTTTAAGCTGTGTATATCCAAGAGTCATTCTCTAGGATACAGTATAAAAAGCACACTGTACCTGCACATACAATAAATACAGAGTGTTAACAGGAAACAATTCAATTAACTTAATGGCACATTCAAAATCTTCTCATGCAATTTAAGGTCACGCATCTCAATATGAATTCTCTCACAGGGAAAGTTCCTATCCCTAACAGTGCCTTCCTAGTTGCATGTCATCATAATCCAAAAGTTCAAAACAAGAAAAGCTATCATTATGAAACTGTATACTATCAATCATTTAATGTCACCTGGGCATCATATAGAGTACTTTATGTAGGTGAATGTGAGTGTTGGTGTGATTTTGAAGAGACACAAGAGGCACAGATATTTATATTACCTCCAACCCCATCTCACCTTTTTTTCCGTAACATTTACATGTTTTGGAAAGTGATATTTATGTTTTGTGCTAAAGGTGTGAGACAAGGTAGATATTCTCACATTTGTAATTCTATCACAGCTCTTTTTAAATAGTATTATGTAGTGATACACAATTAAATGCAATCAGTTGAATAATTTTATTTAAAAACGGCACTTTAGGAAATGAAATTATGTATCTGAATATGTATTTTAGTGATCAATTATGAATTAGTCATGTTTTAAATAATGTCTTCTTAAAATCCAATGATTAAGTTTGAATTTGTTTTTATCCTGATTgcgtatatttttatttttgtgtttttttttacaccacaTCTTGTTCTCTGCCTTTACTGACTCCTGAACCACTTACAATGTTTAATGGTATAAAACTGTACATGATATAAACATGAAGACATTACTTCTCGTTTATTTTTCAGTCTCTTCTTTGCATAAAAGTACAACTATTAATGTATGATTATTTCAATAGCTTTAATAACAGCAATATGATTGTTATAAATAACAATAAAAGATCAAATTACCACATATCTGAGAAGGGAGGTACAAAGGGCTTAAGTAAGATTGGTTTTCTttctaagaaaataaataaaggaCTAACACTGCA
>XM_036983484.1
acagacacacactacccaGCCGTCTCCttcttactctccctctctttatacaATCTAACTGATAGCATGACCTTGCAATAGTTGAGGTTTGATTTGTGGAGTTATGGATCCCTCCTCAACCAGCCAGGACAGCCAGTCTTGAGGAGCACCTTGTGAACTAGCCTTGTCTGGAGTACAGTACAGCGCCCCTGTCTGTTGTTGTCAGCGTGCCAGAGGGAAAGCTAGGAGGCCCCTCTTCTCTACCATTAATCTGCTCCCTCCCTggagcaggcaggcagggtggACAGAGCAGAGCTGAGGGAGAGCCTGGAGCCTGACCCTTCCTGGAGGAGTAGAAGGACGTAGGTGATGGAGTGGTGAGGGAGACCCAAACTGTGGTGAGGGAGACCCAAAAGAGCCACATCTGGCCGGGCATACAGACCTGTACATGCAGGAGCATGGGGGCATCTTATTCAAAGAAACATCGGCCTATGCGAACCTGCAGTGGGAGCAGCAGCCCAGGCAGGATGGGAGCCACCCACCTCAGGACTACCCTCACAGGGACCAGCCCCCAGTGGCTGACTACACCCCCCAGCCCAATTACATGGAGGGAGATCATGATCTCATCAAGCCCAAAAAGCTCCTTAATCCAGTGAAAGCCTCCAAAAGCCACCAGGACCTCCAACGAGAGCTGCTAATGAGCCATAAAAGgggtggtgttgttggtgtggAATCTAAGCCTGAGCTGCAGCGAGTGTTAGAGGCCAGGAAGAGGGAAAAAGTGATAAAGCAGAGGAAGGAAGAAGATGAGGCCAGAAAGAAGATCTCTCCTCTGGAACAAGAGCTCCTCAAGAGGAAGGATAAGCTAGAAGTGTTGGAGAAGGAGCAGGAAAAACAAGAGGAGACAGTGAAAGCCCCAGAGTTTGTCAAGGTCAAGGAGAACTTGAGACGTACGTCCTTTCACAgtaatggagagaaagaggtgtaGAGAACAAACGGTCCAGGTATACAATTTAGTTAGAATCTGCTGGAGTTTGCACACATGTGTGTATTATACGTGTGAATGGACAAAGAACTGCTGTGATGTGCTCCTCTGACTGCACAACTCAGACACCGGCAAGGAACTTCTACCTGTTACAAGGACTGGTCGACAAGCCATGACACAATGCCTTCACTATCCTACTcagagcagagacacagagagagacagagaaggaaggTTGACTCTGCATTGGGCTACTGTTACAGTCAGTAACATAGGCCAAACTATAGCTGTGACATCTCAATCCAGAGTAACTGGCATGAGTGTGAGGGTCAAAGAGGGGAGCAGCTATTCACTTGTGGACATAGTGTTCCGTATTGCAACGACTCTAGAAATAAAGCCAAAGTGGGTGTTCTTCTACAGTGTCACAGCAGTGGCTACTTTTTATTTTAAGCTGTGTATATCCAAGAGTCATTCTCTAGGATACAGTATAAAAAGCACACTGTACCTGCACATACAATAAATACAGAGTGTTAACAGGAAACAATTCAATTAACTTAATGGCACATTCAAAATCTTCTCATGCAATTTAAGGTCACGCATCTCAATATGAATTCTCTCACAGGGAAAGTTCCTATCCCTAACAGTGCCTTCCTAGTTGCATGTCATCATAATCCAAAAGTTCAAAACAAGAAAAGCTATCATTATGAAACTGTATACTATCAATCATTTAATGTCACCTGGGCATCATATAGAGTACTTTATGTAGGTGAATGTGAGTGTTGGTGTGATTTTGAAGAGACACAAGAGGCACAGATATTTATATTACCTCCAACCCCATCTCACCTTTTTTTCCGTAACATTTACATGTTTTGGAAAGTGATATTTATGTTTTGTGCTAAAGGTGTGAGACAAGGTAGATATTCTCACATTTGTAATTCTATCACAGCTCTTTTTAAATAGTATTATGTAGTGATACACAATTAAATGCAATCAGTTGAATAATTTTATTTAAAAACGGCACTTTAGGAAATGAAATTATGTATCTGAATATGTATTTTAGTGATCAATTATGAATTAGTCATGTTTTAAATAATGTCTTCTTAAAATCCAATGATTAAGTTTGAATTTGTTTTTATCCTGATTgcgtatatttttatttttgtgtttttttttacaccacaTCTTGTTCTCTGCCTTTACTGACTCCTGAACCACTTACAATGTTTAATGGTATAAAACTGTACATGATATAAACATGAAGACATTACTTCTCGTTTATTTTTCAGTCTCTTCTTTGCATAAAAGTACAACTATTAATGTATGATTATTTCAATAGCTTTAATAACAGCAATATGATTGTTATAAATAACAATAAAAGATCAAATTACCACATATCTGAGAAGGGAGGTACAAAGGGCTTAAGTAAGATTGGTTTTCTttctaagaaaataaataaaggaCTAACACTGCA
>XM_021609634.2
AGCCTGGGCACAGAAGTTTAAAGGAGTGCTGCACCAGCCCTGCCTCCGACGGGCTTCTACACAGAGACATTTAGGTTtcagagacaggacacacagagacacccggacagagagagagagagagagagacagacacagagagaggcatGGCACAGAGAGTCACCCACAGCCACAGCCTGTTCCCTCCTGGCCAGTCTGGGAGGCCCAGGGACGTGATGGTCAAGTCAGCATCGGCCTATGCGAACCTGCAGTGGGAGCAGCAGCCCAGGCAGGATGGGAGCCACCCACCTCAGGACTACCCTCACAGGGACCAGCCCCCAGTGGCTGACTACACCCCCCAGCCCAATTACATGGAGGGAGATCATGATCTCATCAAGCCCAAAAAGCTCCTTAATCCAGTGAAAGCCTCCAAAAGCCACCAGGACCTCCAACGAGAGCTGCTAATGAGCCATAAAAGgggtggtgttgttggtgtggAATCTAAGCCTGAGCTGCAGCGAGTGTTAGAGGCCAGGAAGAGGGAAAAAGTGATAAAGCAGAGGAAGGAAGAAGATGAGGCCAGAAAGAAGATCTCTCCTCTGGAACAAGAGCTCCTCAAGAGGAAGGATAAGCTAGAAGTGTTGGAGAAGGAGCAGGAAAAACAAGAGGAGACAGTGAAAGCCCCAGAGTTTGTCAAGGTCAAGGAGAACTTGAGACGTACGTCCTTTCACAgtaatggagagaaagaggtgtaGAGAACAAACGGTCCAGGTATACAATTTAGTTAGAATCTGCTGGAGTTTGCACACATGTGTGTATTATACGTGTGAATGGACAAAGAACTGCTGTGATGTGCTCCTCTGACTGCACAACTCAGACACCGGCAAGGAACTTCTACCTGTTACAAGGACTGGTCGACAAGCCATGACACAATGCCTTCACTATCCTACTcagagcagagacacagagagagacagagaaggaaggTTGACTCTGCATTGGGCTACTGTTACAGTCAGTAACATAGGCCAAACTATAGCTGTGACATCTCAATCCAGAGTAACTGGCATGAGTGTGAGGGTCAAAGAGGGGAGCAGCTATTCACTTGTGGACATAGTGTTCCGTATTGCAACGACTCTAGAAATAAAGCCAAAGTGGGTGTTCTTCTACAGTGTCACAGCAGTGGCTACTTTTTATTTTAAGCTGTGTATATCCAAGAGTCATTCTCTAGGATACAGTATAAAAAGCACACTGTACCTGCACATACAATAAATACAGAGTGTTAACAGGAAACAATTCAATTAACTTAATGGCACATTCAAAATCTTCTCATGCAATTTAAGGTCACGCATCTCAATATGAATTCTCTCACAGGGAAAGTTCCTATCCCTAACAGTGCCTTCCTAGTTGCATGTCATCATAATCCAAAAGTTCAAAACAAGAAAAGCTATCATTATGAAACTGTATACTATCAATCATTTAATGTCACCTGGGCATCATATAGAGTACTTTATGTAGGTGAATGTGAGTGTTGGTGTGATTTTGAAGAGACACAAGAGGCACAGATATTTATATTACCTCCAACCCCATCTCACCTTTTTTTCCGTAACATTTACATGTTTTGGAAAGTGATATTTATGTTTTGTGCTAAAGGTGTGAGACAAGGTAGATATTCTCACATTTGTAATTCTATCACAGCTCTTTTTAAATAGTATTATGTAGTGATACACAATTAAATGCAATCAGTTGAATAATTTTATTTAAAAACGGCACTTTAGGAAATGAAATTATGTATCTGAATATGTATTTTAGTGATCAATTATGAATTAGTCATGTTTTAAATAATGTCTTCTTAAAATCCAATGATTAAGTTTGAATTTGTTTTTATCCTGATTgcgtatatttttatttttgtgtttttttttacaccacaTCTTGTTCTCTGCCTTTACTGACTCCTGAACCACTTACAATGTTTAATGGTATAAAACTGTACATGATATAAACATGAAGACATTACTTCTCGTTTATTTTTCAGTCTCTTCTTTGCATAAAAGTACAACTATTAATGTATGATTATTTCAATAGCTTTAATAACAGCAATATGATTGTTATAAATAACAATAAAAGATCAAATTACCACATATCTGAGAAGGGAGGTACAAAGGGCTTAAGTAAGATTGGTTTTCTttctaagaaaataaataaaggaCTAACACTGCA

Function

NR:

description
protein FAM107B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983483.1 False 2501 mRNA 0.42 5 52445119 52489548
XM_036983484.1 False 2435 mRNA 0.42 4 52445121 52489548
XM_021609634.2 True 2202 mRNA 0.41 4 52469733 52489548

Neighbor

gene id symbol gene type direction distance location
LOC110527974 LOC106583021 coding upstream 1012054 51429630 ~ 51433065 (+)
LOC110528964 LOC106565849 coding upstream 1026770 51252123 ~ 51418349 (+)
thoc7 thoc7 coding upstream 1287056 51152050 ~ 51158063 (+)
psd6 psd6 coding upstream 1347671 51093272 ~ 51097448 (+)
LOC110527970 LOC106583026 coding upstream 1365990 50960494 ~ 51079129 (+)
LOC110527978 LOC106565857 coding downstream 21722 52511270 ~ 52548815 (+)
LOC110527979 LOC106583014 coding downstream 170086 52659634 ~ 52669736 (+)
LOC110527981 glt8d1 coding downstream 192167 52681715 ~ 52691283 (+)
LOC118965296 NA coding downstream 219064 52708612 ~ 52713563 (+)
LOC110527982 LOC106565863 coding downstream 247053 52736601 ~ 52783292 (+)
G621583 NA non-coding upstream 89047 52351762 ~ 52356072 (+)
G621562 NA non-coding upstream 118334 52326567 ~ 52326785 (+)
G621561 NA non-coding upstream 119038 52325828 ~ 52326081 (+)
G621489 NA non-coding upstream 164494 52280416 ~ 52280625 (+)
G621454 NA non-coding upstream 183998 52260921 ~ 52261121 (+)
G621720 NA non-coding downstream 945 52490493 ~ 52490696 (+)
G621724 NA non-coding downstream 11275 52500823 ~ 52501078 (+)
G621746 NA non-coding downstream 60351 52549899 ~ 52550128 (+)
G621755 NA non-coding downstream 77124 52566672 ~ 52566892 (+)
G621756 NA non-coding downstream 77608 52567156 ~ 52567511 (+)
G621650 NA other upstream 53486 52391348 ~ 52391633 (+)
G618712 LOC106583033 other upstream 2140887 50303430 ~ 50304232 (+)
tafa4b LOC106583040 other upstream 2824951 49571790 ~ 49620194 (+)
G617133 NA other upstream 3617892 48826827 ~ 48827227 (+)
G621695 LOC106582949 other downstream 1620 52491168 ~ 52493240 (+)
G623180 NA other downstream 1264358 53753906 ~ 53754119 (+)
G624628 NA other downstream 2334089 54823637 ~ 54824199 (+)
G624962 LOC106582975 other downstream 2557748 55047296 ~ 55052688 (+)
LOC110528007 LOC106582974 other downstream 2581084 55053185 ~ 55074095 (+)

Expression


Co-expression Network