Gene
RNA
| Item | Value |
|---|---|
| gene id | spcs1 |
| gene name | spcs1 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 52669452 ~ 52672489 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| spcs1 | Predicted to be involved in protein targeting to ER and signal peptide processing. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of signal peptidase complex. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human SPCS1 (signal peptidase complex subunit 1). |
| description |
|---|
| signal peptidase complex subunit 1-like |
| id | name | namespace |
|---|---|---|
| GO:0006465 | signal peptide processing | biological_process |
| GO:0005787 | signal peptidase complex | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0008233 | peptidase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001165223.2 | False | 521 | mRNA | 0.43 | 4 | 52669452 | 52672456 |
| TU707506 | True | 467 | lncRNA | 0.43 | 3 | 52669452 | 52672489 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| camk1b | LOC106583015 | coding | downstream | 10697 | 52583789 ~ 52658755 (-) |
| LOC118965403 | NA | coding | downstream | 215559 | 52453839 ~ 52453893 (-) |
| ptprga | LOC106583020 | coding | downstream | 942974 | 51449031 ~ 51726478 (-) |
| LOC110527973 | synpr | coding | downstream | 1462243 | 51179203 ~ 51207209 (-) |
| LOC110527971 | LOC106583024 | coding | downstream | 1517432 | 51097457 ~ 51152020 (-) |
| gnl3 | LOC106583012 | coding | upstream | 18885 | 52691341 ~ 52696843 (-) |
| LOC118965419 | NA | coding | upstream | 19656 | 52692112 ~ 52692187 (-) |
| LOC118965421 | NA | coding | upstream | 19989 | 52692445 ~ 52692518 (-) |
| LOC118965420 | NA | coding | upstream | 20569 | 52693025 ~ 52693099 (-) |
| LOC118965422 | NA | coding | upstream | 21488 | 52693944 ~ 52694019 (-) |
| G621993 | NA | non-coding | downstream | 106692 | 52562549 ~ 52562760 (-) |
| G621988 | NA | non-coding | downstream | 111896 | 52557243 ~ 52557556 (-) |
| G621955 | NA | non-coding | downstream | 162481 | 52506727 ~ 52506971 (-) |
| G621946 | NA | non-coding | downstream | 170985 | 52498163 ~ 52498467 (-) |
| G621918 | LOC106583019 | non-coding | downstream | 179953 | 52481627 ~ 52489499 (-) |
| G622061 | NA | non-coding | upstream | 567 | 52673023 ~ 52674718 (-) |
| G622088 | NA | non-coding | upstream | 48285 | 52720741 ~ 52720961 (-) |
| G622357 | NA | non-coding | upstream | 176437 | 52848893 ~ 52857351 (-) |
| G622358 | NA | non-coding | upstream | 177227 | 52849683 ~ 52857693 (-) |
| G622359 | NA | non-coding | upstream | 178035 | 52850491 ~ 52858404 (-) |
| G619733 | NA | other | downstream | 1710912 | 50956271 ~ 50958540 (-) |
| LOC110527964 | LOC106583033 | other | downstream | 2363296 | 50300364 ~ 50306278 (-) |
| LOC110527961 | LOC106565835 | other | downstream | 2733171 | 49660022 ~ 49936575 (-) |
| mustn1b | mstn1 | other | downstream | 3372204 | 49295040 ~ 49297305 (-) |
| G617632 | NA | other | downstream | 3473482 | 49195604 ~ 49195970 (-) |
| G622985 | NA | other | upstream | 633080 | 53305536 ~ 53322831 (-) |
| G625426 | NA | other | upstream | 2400023 | 55072479 ~ 55075396 (-) |
| G625472 | LOC106582968 | other | upstream | 2492036 | 55164492 ~ 55188756 (-) |
| LOC110528020 | LOC106582955 | other | upstream | 2761000 | 55420466 ~ 55566988 (-) |
| G627254 | NA | other | upstream | 4018867 | 56691323 ~ 56696091 (-) |
