LOC110527981 (glt8d1)


Basic Information

Item Value
gene id LOC110527981
gene name glt8d1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 52681715 ~ 52691283 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983488.1
taaaatattTTAAGAAGAGAAATGGTAGAAATGGGCGgagtttatgactttgtggctgtattAACTAGCGACAACCATTCACGGGCGACAGACTTGTTGATGTTGAGTTGGCACTTTGGCTTttgatgtgattttttttttatgtctGTTAACAAGGAGAGCAGCAGATGACGACGCGATGTCATTACGGAGAGTAAATGTGGCCATCCTTGTGCTGCTGGCAGTAGCATTTCTGATCATCGTGCAACGGAATCTCCTGAATCTCAATGACTTCCTTAGAAGTGAGAATCCAGATGCAGTGCCAGGTATGATCCTGCCATTTGAGTCTGAGTTTTCTCCTGAGCTCAGACCAGACCTTGTGAGAACTGGGGAGAAGATCCCAGTGGTCATTACTGCTGCGGAGGAGAGACTGGGAGCTGTGGTGGCTGCCATGAACAGTGTCTACCACAACAGCAAAGCCAACATTGTGTTCAACATTGTGACCATGAATGACACTGTGGATCACCTCAAAGTGTGGATGACTCAGCTTAACAATGTCAAGCACAAGATCATCATATTTGAGCCCCAACTTCTCAATGGGAAGATTACCAAAAATCCTCAGAAGCTTGACTCTGTGAAACCGttGACCTTTGCCAGATTTTACATGCCGGCATTCATACCAGATGCAGAAAAGGCCATTTATTTGGATGATGACATCATTGTACAAGTAAACATGTTTGCAGGGGACATCCAAGAGCTTTTTGACACAAGCCTAAAGTCTGGTCACGCAGCTGCGTTCTCAGACGACTGTGATTCTGCATCCGCAAAGGGCATCGTTCGAGGGGCCGGGAACCAGAACAATTACATTGGCTTCCTGGACTTTAAAAAAGAGGCCATCAAGAAGCTGGGCATGAGAGCTAACACGTGTTCCTTTAATCCCGGAGTGATCGTGGCCAACCTGACGGAGTGGAAGCGTCAGAACATCACCAACCAACTAGAACACTGGATGGAGCTCAACGCACAAGAGGACCTCTACAGTAAGACCCTGGCAGAGAGTATTACCACACCTCCCCTGCTCATTGTCTTCTACAAACACCACTCCAGCATCGACCCCATGTGGCACGTCAGACACCTAGGGGCTACTGGTGCTGGAAACCGCTACTCTCCCCAGTTTGTGAAAGCTGCCAAACTCCTCCATTGGAACGGACATTACAAACCATGGTCCAGGACCTCTTCATTCACCGAAGTCTGGGACAAGTGGTATATTCAGGACCCCATGCGTAAATTCCATCCAGTTCGGAAACATGCAGGGGACAAGTAGACTAAAGCAGGGATGTGACCAGACGACAGCTAGTCTGCCTCTACCCGTCTGTCCTCCCAGTGACTTCTCAGGAACCCTAACGTGATGCAAGCCCATTCCAGTGATATGTCTACCGTTTACCATGCAGTGATGATGTAGATCTCAGGCAGAGACAGCGGCATGTTACAGATGTGTCATACGATACATCTCAATAGTTTAGTGGTCTGTCTTTTTtcacatcaatgcaaatgcagctacatAAGACTGTTGAGATGCGCCAATGGTTCTATGCTTAGCTTCATGAGACAAGATAATCATGTGCCTGTGTTCAGGAACGAGCCCTCTAACAATTTGCCAAGATTGCCTCTTTCCTTAGACTTTTACTTTGATCCTTGTTCTGACAAAATGATTCAATCTTTGTTACTGCTGGTTGTCTCGCACTTTAACTCTTTTGTATATCACTACCACAACACTAAACTTTACACAACAAATAGTTATAAACAAGCTTGAAGCCTACTATCCTTTCTCTTGATTGCATTTAGCAAAGGATGGATATAATGGTATACACAAACCACTATGGTATCAATACGTGTCGAATAGCTTATTTACATCATTGACACTTATCTAGAGTGCATACATTCTCGTACTGGTTGCCCGTGGGAATCAAAACCACACTATGCTCTACCAAGTCACATGGGACTGCTATGGTTTTTATTTTAAAGTATTCTCAACCGCTACACGCCTCCTGAAAATGTGGTGATTGCTTACAGCTGTTACAAGTCAGTCAGGGCTTATTTTTGTACAAAGGATTATTCAAATTGTCATCCTTTTGTAAAAGAAGCTTAATAAAACCAAGTCAACTAC
>XM_021609647.2
aaatattTTAAGAAGAGAAATGGTAGAAATGGGCGgagtttatgactttgtggctgtattAACTAGCGACAACCATTCACGGGCGACAGACTTGTTGATGTTGAGTTGGCACTTTGGCTTttgatgtgattttttttttatgtctGTTAACAAGGAGAGCAGCAGATGACGACGCGATGTCATTACGGAGAGTAAATGTGGCCATCCTTGTGCTGCTGGCAGTAGCATTTCTGATCATCGTGCAACGGAATCTCCTGAATCTCAATGACTTCCTTAGAAGTGAGAATCCAGATGCAGTGCCAGGTATGATCCTGCCATTTGAGTCTGAGTTTTCTCCTGAGCTCAGACCAGACCTTGTGAGAACTGGGGAGAAGATCCCAGTGGTCATTACTGCTGCGGAGGAGAGACTGGGAGCTGTGGTGGCTGCCATGAACAGTGTCTACCACAACAGCAAAGCCAACATTGTGTTCAACATTGTGACCATGAATGACACTGTGGATCACCTCAAAGTGTGGATGACTCAGCTTAACAATGTCAAGCACAAGATCATCATATTTGAGCCCCAACTTCTCAATGGGAAGATTACCAAAAATCCTCAGAAGCTTGACTCTGTGAAACCGttGACCTTTGCCAGATTTTACATGCCGGCATTCATACCAGATGCAGAAAAGGCCATTTATTTGGATGATGACATCATTGTACAAGGGGACATCCAAGAGCTTTTTGACACAAGCCTAAAGTCTGGTCACGCAGCTGCGTTCTCAGACGACTGTGATTCTGCATCCGCAAAGGGCATCGTTCGAGGGGCCGGGAACCAGAACAATTACATTGGCTTCCTGGACTTTAAAAAAGAGGCCATCAAGAAGCTGGGCATGAGAGCTAACACGTGTTCCTTTAATCCCGGAGTGATCGTGGCCAACCTGACGGAGTGGAAGCGTCAGAACATCACCAACCAACTAGAACACTGGATGGAGCTCAACGCACAAGAGGACCTCTACAGTAAGACCCTGGCAGAGAGTATTACCACACCTCCCCTGCTCATTGTCTTCTACAAACACCACTCCAGCATCGACCCCATGTGGCACGTCAGACACCTAGGGGCTACTGGTGCTGGAAACCGCTACTCTCCCCAGTTTGTGAAAGCTGCCAAACTCCTCCATTGGAACGGACATTACAAACCATGGTCCAGGACCTCTTCATTCACCGAAGTCTGGGACAAGTGGTATATTCAGGACCCCATGCGTAAATTCCATCCAGTTCGGAAACATGCAGGGGACAAGTAGACTAAAGCAGGGATGTGACCAGACGACAGCTAGTCTGCCTCTACCCGTCTGTCCTCCCAGTGACTTCTCAGGAACCCTAACGTGATGCAAGCCCATTCCAGTGATATGTCTACCGTTTACCATGCAGTGATGATGTAGATCTCAGGCAGAGACAGCGGCATGTTACAGATGTGTCATACGATACATCTCAATAGTTTAGTGGTCTGTCTTTTTtcacatcaatgcaaatgcagctacatAAGACTGTTGAGATGCGCCAATGGTTCTATGCTTAGCTTCATGAGACAAGATAATCATGTGCCTGTGTTCAGGAACGAGCCCTCTAACAATTTGCCAAGATTGCCTCTTTCCTTAGACTTTTACTTTGATCCTTGTTCTGACAAAATGATTCAATCTTTGTTACTGCTGGTTGTCTCGCACTTTAACTCTTTTGTATATCACTACCACAACACTAAACTTTACACAACAAATAGTTATAAACAAGCTTGAAGCCTACTATCCTTTCTCTTGATTGCATTTAGCAAAGGATGGATATAATGGTATACACAAACCACTATGGTATCAATACGTGTCGAATAGCTTATTTACATCATTGACACTTATCTAGAGTGCATACATTCTCGTACTGGTTGCCCGTGGGAATCAAAACCACACTATGCTCTACCAAGTCACATGGGACTGCTATGGTTTTTATTTTAAAGTATTCTCAACCGCTACACGCCTCCTGAAAATGTGGTGATTGCTTACAGCTGTTACAAGTCAGTCAGGGCTTATTTTTGTACAAAGGATTATTCAAATTGTCATCCTTTTGTAAAAGAAGCTTAATAAAACCAAGTCAACTACC
>XM_021609644.2
gattttttttttatgtctgtgAGTAGGATGCATGTgtttatatattattttaaaacGAATTTGACTTGGTTTATTCATAGCAGATCCATCCCATTTCTTCATGTGCTTATTTGTGAGACGGTGGTTAACAAGGAGAGCAGCAGATGACGACGCGATGTCATTACGGAGAGTAAATGTGGCCATCCTTGTGCTGCTGGCAGTAGCATTTCTGATCATCGTGCAACGGAATCTCCTGAATCTCAATGACTTCCTTAGAAGTGAGAATCCAGATGCAGTGCCAGGTATGATCCTGCCATTTGAGTCTGAGTTTTCTCCTGAGCTCAGACCAGACCTTGTGAGAACTGGGGAGAAGATCCCAGTGGTCATTACTGCTGCGGAGGAGAGACTGGGAGCTGTGGTGGCTGCCATGAACAGTGTCTACCACAACAGCAAAGCCAACATTGTGTTCAACATTGTGACCATGAATGACACTGTGGATCACCTCAAAGTGTGGATGACTCAGCTTAACAATGTCAAGCACAAGATCATCATATTTGAGCCCCAACTTCTCAATGGGAAGATTACCAAAAATCCTCAGAAGCTTGACTCTGTGAAACCGttGACCTTTGCCAGATTTTACATGCCGGCATTCATACCAGATGCAGAAAAGGCCATTTATTTGGATGATGACATCATTGTACAAGTAAACATGTTTGCAGGGGACATCCAAGAGCTTTTTGACACAAGCCTAAAGTCTGGTCACGCAGCTGCGTTCTCAGACGACTGTGATTCTGCATCCGCAAAGGGCATCGTTCGAGGGGCCGGGAACCAGAACAATTACATTGGCTTCCTGGACTTTAAAAAAGAGGCCATCAAGAAGCTGGGCATGAGAGCTAACACGTGTTCCTTTAATCCCGGAGTGATCGTGGCCAACCTGACGGAGTGGAAGCGTCAGAACATCACCAACCAACTAGAACACTGGATGGAGCTCAACGCACAAGAGGACCTCTACAGTAAGACCCTGGCAGAGAGTATTACCACACCTCCCCTGCTCATTGTCTTCTACAAACACCACTCCAGCATCGACCCCATGTGGCACGTCAGACACCTAGGGGCTACTGGTGCTGGAAACCGCTACTCTCCCCAGTTTGTGAAAGCTGCCAAACTCCTCCATTGGAACGGACATTACAAACCATGGTCCAGGACCTCTTCATTCACCGAAGTCTGGGACAAGTGGTATATTCAGGACCCCATGCGTAAATTCCATCCAGTTCGGAAACATGCAGGGGACAAGTAGACTAAAGCAGGGATGTGACCAGACGACAGCTAGTCTGCCTCTACCCGTCTGTCCTCCCAGTGACTTCTCAGGAACCCTAACGTGATGCAAGCCCATTCCAGTGATATGTCTACCGTTTACCATGCAGTGATGATGTAGATCTCAGGCAGAGACAGCGGCATGTTACAGATGTGTCATACGATACATCTCAATAGTTTAGTGGTCTGTCTTTTTtcacatcaatgcaaatgcagctacatAAGACTGTTGAGATGCGCCAATGGTTCTATGCTTAGCTTCATGAGACAAGATAATCATGTGCCTGTGTTCAGGAACGAGCCCTCTAACAATTTGCCAAGATTGCCTCTTTCCTTAGACTTTTACTTTGATCCTTGTTCTGACAAAATGATTCAATCTTTGTTACTGCTGGTTGTCTCGCACTTTAACTCTTTTGTATATCACTACCACAACACTAAACTTTACACAACAAATAGTTATAAACAAGCTTGAAGCCTACTATCCTTTCTCTTGATTGCATTTAGCAAAGGATGGATATAATGGTATACACAAACCACTATGGTATCAATACGTGTCGAATAGCTTATTTACATCATTGACACTTATCTAGAGTGCATACATTCTCGTACTGGTTGCCCGTGGGAATCAAAACCACACTATGCTCTACCAAGTCACATGGGACTGCTATGGTTTTTATTTTAAAGTATTCTCAACCGCTACACGCCTCCTGAAAATGTGGTGATTGCTTACAGCTGTTACAAGTCAGTCAGGGCTTATTTTTGTACAAAGGATTATTCAAATTGTCATCCTTTTGTAAAAGAAGCTTAATAAAACCAAGTCAACTAC
>XM_021609646.2
tttttttatgtctgtgAGTAGGATGCATGTgtttatatattattttaaaacGAATTTGACTTGGTTTATTCATAGCAGATCCATCCCATTTCTTCATGTGCTTATTTGTGAGACGGTGGTTAACAAGGAGAGCAGCAGATGACGACGCGATGTCATTACGGAGAGTAAATGTGGCCATCCTTGTGCTGCTGGCAGTAGCATTTCTGATCATCGTGCAACGGAATCTCCTGAATCTCAATGACTTCCTTAGAAGTGAGAATCCAGATGCAGTGCCAGGTATGATCCTGCCATTTGAGTCTGAGTTTTCTCCTGAGCTCAGACCAGACCTTGTGAGAACTGGGGAGAAGATCCCAGTGGTCATTACTGCTGCGGAGGAGAGACTGGGAGCTGTGGTGGCTGCCATGAACAGTGTCTACCACAACAGCAAAGCCAACATTGTGTTCAACATTGTGACCATGAATGACACTGTGGATCACCTCAAAGTGTGGATGACTCAGCTTAACAATGTCAAGCACAAGATCATCATATTTGAGCCCCAACTTCTCAATGGGAAGATTACCAAAAATCCTCAGAAGCTTGACTCTGTGAAACCGttGACCTTTGCCAGATTTTACATGCCGGCATTCATACCAGATGCAGAAAAGGCCATTTATTTGGATGATGACATCATTGTACAAGGGGACATCCAAGAGCTTTTTGACACAAGCCTAAAGTCTGGTCACGCAGCTGCGTTCTCAGACGACTGTGATTCTGCATCCGCAAAGGGCATCGTTCGAGGGGCCGGGAACCAGAACAATTACATTGGCTTCCTGGACTTTAAAAAAGAGGCCATCAAGAAGCTGGGCATGAGAGCTAACACGTGTTCCTTTAATCCCGGAGTGATCGTGGCCAACCTGACGGAGTGGAAGCGTCAGAACATCACCAACCAACTAGAACACTGGATGGAGCTCAACGCACAAGAGGACCTCTACAGTAAGACCCTGGCAGAGAGTATTACCACACCTCCCCTGCTCATTGTCTTCTACAAACACCACTCCAGCATCGACCCCATGTGGCACGTCAGACACCTAGGGGCTACTGGTGCTGGAAACCGCTACTCTCCCCAGTTTGTGAAAGCTGCCAAACTCCTCCATTGGAACGGACATTACAAACCATGGTCCAGGACCTCTTCATTCACCGAAGTCTGGGACAAGTGGTATATTCAGGACCCCATGCGTAAATTCCATCCAGTTCGGAAACATGCAGGGGACAAGTAGACTAAAGCAGGGATGTGACCAGACGACAGCTAGTCTGCCTCTACCCGTCTGTCCTCCCAGTGACTTCTCAGGAACCCTAACGTGATGCAAGCCCATTCCAGTGATATGTCTACCGTTTACCATGCAGTGATGATGTAGATCTCAGGCAGAGACAGCGGCATGTTACAGATGTGTCATACGATACATCTCAATAGTTTAGTGGTCTGTCTTTTTtcacatcaatgcaaatgcagctacatAAGACTGTTGAGATGCGCCAATGGTTCTATGCTTAGCTTCATGAGACAAGATAATCATGTGCCTGTGTTCAGGAACGAGCCCTCTAACAATTTGCCAAGATTGCCTCTTTCCTTAGACTTTTACTTTGATCCTTGTTCTGACAAAATGATTCAATCTTTGTTACTGCTGGTTGTCTCGCACTTTAACTCTTTTGTATATCACTACCACAACACTAAACTTTACACAACAAATAGTTATAAACAAGCTTGAAGCCTACTATCCTTTCTCTTGATTGCATTTAGCAAAGGATGGATATAATGGTATACACAAACCACTATGGTATCAATACGTGTCGAATAGCTTATTTACATCATTGACACTTATCTAGAGTGCATACATTCTCGTACTGGTTGCCCGTGGGAATCAAAACCACACTATGCTCTACCAAGTCACATGGGACTGCTATGGTTTTTATTTTAAAGTATTCTCAACCGCTACACGCCTCCTGAAAATGTGGTGATTGCTTACAGCTGTTACAAGTCAGTCAGGGCTTATTTTTGTACAAAGGATTATTCAAATTGTCATCCTTTTGTAAAAGAAGCTTAATAAAACCAAGTCAACTAC

Function

symbol description
glt8d1 Predicted to enable hexosyltransferase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human GLT8D1 (glycosyltransferase 8 domain containing 1).

NR:

description
glycosyltransferase 8 domain-containing protein 1 isoform X3

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983488.1 False 2143 mRNA 0.45 10 52681715 52691282
XM_021609647.2 False 2127 mRNA 0.45 10 52681717 52691283
XM_021609644.2 False 2119 mRNA 0.44 10 52681844 52691282
XM_021609646.2 True 2099 mRNA 0.44 10 52681849 52691282

Neighbor

gene id symbol gene type direction distance location
LOC110527979 LOC106583014 coding upstream 11979 52659634 ~ 52669736 (+)
LOC110527978 LOC106565857 coding upstream 132900 52511270 ~ 52548815 (+)
si:ch211-236d3.4 LOC106583019 coding upstream 192167 52445119 ~ 52489548 (+)
LOC110527974 LOC106583021 coding upstream 1248650 51429630 ~ 51433065 (+)
LOC110528964 LOC106565849 coding upstream 1263366 51252123 ~ 51418349 (+)
LOC118965296 NA coding downstream 17329 52708612 ~ 52713563 (+)
LOC110527982 LOC106565863 coding downstream 45318 52736601 ~ 52783292 (+)
glut1a glut1a coding downstream 191217 52882500 ~ 52903136 (+)
LOC110527984 LOC106583006 coding downstream 231594 52922877 ~ 53091054 (+)
lrig2 LOC106583004 coding downstream 436138 53127421 ~ 53136965 (+)
G621822 NA non-coding upstream 5093 52676253 ~ 52676622 (+)
G621821 NA non-coding upstream 5672 52675738 ~ 52676043 (+)
G621816 NA non-coding upstream 14162 52667131 ~ 52667553 (+)
G621812 NA non-coding upstream 22310 52658988 ~ 52659405 (+)
G621756 NA non-coding upstream 114204 52567156 ~ 52567511 (+)
G621850 NA non-coding downstream 37244 52728527 ~ 52728802 (+)
G622182 NA non-coding downstream 217326 52908609 ~ 52908814 (+)
G622216 NA non-coding downstream 267695 52958978 ~ 52976643 (+)
G622304 NA non-coding downstream 413267 53104550 ~ 53116589 (+)
G621695 LOC106582949 other upstream 188475 52491168 ~ 52493240 (+)
G621650 NA other upstream 290082 52391348 ~ 52391633 (+)
LOC110527970 LOC106583026 other upstream 1607708 50960494 ~ 51079129 (+)
G618712 LOC106583033 other upstream 2377483 50303430 ~ 50304232 (+)
tafa4b LOC106583040 other upstream 3061547 49571790 ~ 49620194 (+)
G623180 NA other downstream 1062623 53753906 ~ 53754119 (+)
G624628 NA other downstream 2132354 54823637 ~ 54824199 (+)
G624962 LOC106582975 other downstream 2356013 55047296 ~ 55052688 (+)
LOC110528007 LOC106582974 other downstream 2379349 55053185 ~ 55074095 (+)
LOC110527126 LOC106582962 other downstream 2516378 55207615 ~ 55208708 (+)

Expression


Co-expression Network