gnl3 (LOC106583012)


Basic Information

Item Value
gene id gnl3
gene name LOC106583012
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 52691341 ~ 52696843 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609641.2
ccAGTGTGTACCCAGTGGGATAGTGAATAATACCAACCCCACTTTTATTTTGGCACCTAGAATAGTTTATAAGCCTATATGTAATTGATATGCCTATATTGTATTACAGTGTATTACGTGGGGTACTTTTATTTAGGAAATGCCGTGACCCGGAACTACTTTTTTTTGTGCTGTTGATGAGACAGCTAGCTCCTGGTTCCACGTGCAGCAGAATTTTGTAATCGCATTGTCAGACCTATAGCACTGCAATGAAGCGTCCAGGGTTAAAGAAAGCAAGTAAACGCGTGTCTTGCTCCAAACGTTACAAAATACAGAAAAAGgtCCGGGAACACAACAAAAAACTAAGAAAAGATGCAAAAAAGAAAGGAGTTGGCAAAAAAGTGAAAAAGGATATTGGAGTTCCCAACAAAGCACCATTCAAAGAGGATATTCTGAGGGAAGCGGAACAGAGGAGGTCAAAGCTTGAAGAAGAAAAGGAGAAAAATAAGCTTGCAAAGCAACAAGAACGGGCTCAGAAGAGGAAGAAGGAAAACTCTGCCAGCAGGGATGCAGACCCTAAAGCGAAGAAagctagaaagGAGTTACCGTCACAGGAGGTCCTTGTGAAACAGATGGTGAAACAAAGTGACCCAAGGAATTCAAAGAAGCACCTTTGTTCAGAATTAAACAAGGTGATCGATGCCTCTGACATCATCGTTGAAATCCTAGATGCAAGAGATCCCCTTGGCTGCAGATGCCCACAGCTAGAGGAAGCTGTGCTGAAGGGGGAAGGAAACAAGAAGCTACTATTCCTGTTGAACAAAATAGATCTTGTCCCTAAAGAGAATGTGGAGAAGTGGCTACAGTGTCTTCAGCTTGAGTTCCCTGCTGTGGCGTTCAAGGCATCCACACAACAACAGGACAAAACAGTGCAAGAGAAGAAGGCCAGGTTTGCAACTCTTAACGGAGTAGTAGACCAGACCAAAGGAGTGGCCTGTTATGGCAGCAGCAGTCTTCTCCAGCTCCTGGGGGACTATGCAAATGCAACAGGGAGAGAGGGCTCACTAAAAGTGGGCTTAGTCGggTTCCCAAATGTGGGGAAGAGCAGTCTGATCAACAGCCTGAAGGGGATGAGGGCCTGTAATGCAGGAGTCCAGAGAGGGATCACCAGGTGCTTCCAAGACATCCACATATCTAAGAATGTCAAAATGATTGACAGCCCTGGGATAGTGGCAGCCCAGTCTAACCCAAAAGCTGCCATGGCGCTGAGGAGTCTCCAGGTGGAGGATAAGCAGGAGACTGTTCTAGAGGCCGTCAGGACCCTGCTCAAACAGTGCAACAAGCAACAGGTAATGCTTCAGTACAATGTTCCAGACTTTAGAAACTCCCTGGAGTTTTTATCCTTTTTTGCCAAGAAGCGTGGATTTTTACAGAAGGGTGGAGTCCCCAACACAGAACTGGCTGCCTCTACCTTCCTCAATGATTGGACAGGTGCAAAGCTGAGTTACCACTGCAAAGCCCCTGAGAAGCCAAGCCTTCCCCCATACCTCTCTGAAGACATTGTAAGAGAGATGCAGAAAGGGTGGGACTTGGACAAGTTGCGGAAAGGCAACGAGGAGACTCTAAGAAGTGTAAAGTTCCCAAACCAGGCCAGCAGCATTGTCCTCCTGTCTAAAGGCCCCACTGCCGGAGTGCTGAGTGACGTTGTTGAGGacaaacctgctccagagcccacTGAGGAAGATATGGAGGGTAGCTGTGAAAACAAAGAGGCTGGTGGGGTTAAAGAGGTGTCTGAGGAAGGGACTGCGGAAACAGATGAACCACAAATAAAGACACCACTCACAAACAAACAAGCCAAGGTGGGGTTACAGGTTCCTGTCCCAGTCAACATTGACCTCTCCTCAGTCCACACAGATGACACCTATGACTTCAACACAGATTTTAAATGAACATCTGTCCTTTTTGTTTCTCAAGTCTTTTCCTTGTCACGTCTAAACTATACTGGCATCATCTGTTCTGTAAACCTGTGTGACGGAAAATCTTATTTTAGTGGCTTAAATAATCCTTGGTTCTTGGTAAAGATATGAGGGGGAGGTGACATGACCCTCTCCTAAGGACCATCTGGCAGAACACCCATAACATGTTCTATAGGTTAAGATAGATGTTGCTGGAACCAACCCAATGAACTATGCAACGTGTCGGTAACCAGGATGAGCTCTAACAGGACTGCCCTGAGAGTTCCTGACAGACGTGTACGATGATGCATCAAGTTTGTTAGAACCTCTCCAGTTTAATTATTTATTAACAGTGAAGATTGACTTATTTGTCCCTGTGTAGAATTTCCATGACAGGCTATTGGAATCAAGTGACTGTTTAAGGCCTCTGTGTGGATGTAACCTGTATAATGAGTTGGTAAATGGTTTGCCTTGAGTACAGGTCCATGTGaattattgtatatagcctcaaaacaaaTAAATGTATCCATAATTT
>XM_021609642.2
attcagccAGTGTGTACCCAGTGGGATAGTGAATAATACCAACCCCACTTTTATTTTGGCACCTAGAATAGTTTATAAGCCTATATGTAATTGATATGCCTATATTGTATTACAGTGTATTACGTGGGGTACTTTTATTTAGGAAATGCCGTGACCCGGAACTACTTTTTTTTGTGCTGTTGATGAGACAGCTAGCTCCTGGTTCCACGTGCAGCAGAATTTTGTAATCGCATTGTCAGACCTATAGCACTGCAATGAAGCGTCCAGGGTTAAAGAAAGCAAGTAAACGCGTGTCTTGCTCCAAACGTTACAAAATACAGAAAAAGgtCCGGGAACACAACAAAAAACTAAGAAAAGATGCAAAAAAGAAAGGAGTTGGCAAAAAAGTGAAAAAGGATATTGGAGTTCCCAACAAAGCACCATTCAAAGAGGATATTCTGAGGGAAGCGGAACAGAGGAGGTCAAAGCTTGAAGAAGAAAAGGAGAAAAATAAGCTTGCAAAGCAACAAGAACGGGCTCAGAAGAGGAAGAAGGAAAACTCTGCCAGCAGGGATGCAGACCCTAAAGCGAAGAAagctagaaagGTGATCGATGCCTCTGACATCATCGTTGAAATCCTAGATGCAAGAGATCCCCTTGGCTGCAGATGCCCACAGCTAGAGGAAGCTGTGCTGAAGGGGGAAGGAAACAAGAAGCTACTATTCCTGTTGAACAAAATAGATCTTGTCCCTAAAGAGAATGTGGAGAAGTGGCTACAGTGTCTTCAGCTTGAGTTCCCTGCTGTGGCGTTCAAGGCATCCACACAACAACAGGACAAAACAGTGCAAGAGAAGAAGGCCAGGTTTGCAACTCTTAACGGAGTAGTAGACCAGACCAAAGGAGTGGCCTGTTATGGCAGCAGCAGTCTTCTCCAGCTCCTGGGGGACTATGCAAATGCAACAGGGAGAGAGGGCTCACTAAAAGTGGGCTTAGTCGggTTCCCAAATGTGGGGAAGAGCAGTCTGATCAACAGCCTGAAGGGGATGAGGGCCTGTAATGCAGGAGTCCAGAGAGGGATCACCAGGTGCTTCCAAGACATCCACATATCTAAGAATGTCAAAATGATTGACAGCCCTGGGATAGTGGCAGCCCAGTCTAACCCAAAAGCTGCCATGGCGCTGAGGAGTCTCCAGGTGGAGGATAAGCAGGAGACTGTTCTAGAGGCCGTCAGGACCCTGCTCAAACAGTGCAACAAGCAACAGGTAATGCTTCAGTACAATGTTCCAGACTTTAGAAACTCCCTGGAGTTTTTATCCTTTTTTGCCAAGAAGCGTGGATTTTTACAGAAGGGTGGAGTCCCCAACACAGAACTGGCTGCCTCTACCTTCCTCAATGATTGGACAGGTGCAAAGCTGAGTTACCACTGCAAAGCCCCTGAGAAGCCAAGCCTTCCCCCATACCTCTCTGAAGACATTGTAAGAGAGATGCAGAAAGGGTGGGACTTGGACAAGTTGCGGAAAGGCAACGAGGAGACTCTAAGAAGTGTAAAGTTCCCAAACCAGGCCAGCAGCATTGTCCTCCTGTCTAAAGGCCCCACTGCCGGAGTGCTGAGTGACGTTGTTGAGGacaaacctgctccagagcccacTGAGGAAGATATGGAGGGTAGCTGTGAAAACAAAGAGGCTGGTGGGGTTAAAGAGGTGTCTGAGGAAGGGACTGCGGAAACAGATGAACCACAAATAAAGACACCACTCACAAACAAACAAGCCAAGGTGGGGTTACAGGTTCCTGTCCCAGTCAACATTGACCTCTCCTCAGTCCACACAGATGACACCTATGACTTCAACACAGATTTTAAATGAACATCTGTCCTTTTTGTTTCTCAAGTCTTTTCCTTGTCACGTCTAAACTATACTGGCATCATCTGTTCTGTAAACCTGTGTGACGGAAAATCTTATTTTAGTGGCTTAAATAATCCTTGGTTCTTGGTAAAGATATGAGGGGGAGGTGACATGACCCTCTCCTAAGGACCATCTGGCAGAACACCCATAACATGTTCTATAGGTTAAGATAGATGTTGCTGGAACCAACCCAATGAACTATGCAACGTGTCGGTAACCAGGATGAGCTCTAACAGGACTGCCCTGAGAGTTCCTGACAGACGTGTACGATGATGCATCAAGTTTGTTAGAACCTCTCCAGTTTAATTATTTATTAACAGTGAAGATTGACTTATTTGTCCCTGTGTAGAATTTCCATGACAGGCTATTGGAATCAAGTGACTGTTTAAGGCCTCTGTGTGGATGTAACCTGTATAATGAGTTGGTAAATGGTTTGCCTTGAGTACAGGTCCATGTGaattattgtatatagcctcaaaacaaaTAAATGTATCCATAATTT

Function

NR:

description
guanine nucleotide-binding protein-like 3 isoform X2

GO: NA

KEGG:

id description
K14540 rbgA; ribosome biogenesis GTPase A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609641.2 False 2472 mRNA 0.45 15 52691341 52696837
XM_021609642.2 True 2385 mRNA 0.45 14 52691341 52696843

Neighbor

gene id symbol gene type direction distance location
spcs1 spcs1 coding downstream 18885 52669452 ~ 52672489 (-)
camk1b LOC106583015 coding downstream 32586 52583789 ~ 52658755 (-)
LOC118965403 NA coding downstream 237448 52453839 ~ 52453893 (-)
ptprga LOC106583020 coding downstream 964863 51449031 ~ 51726478 (-)
LOC110527973 synpr coding downstream 1484132 51179203 ~ 51207209 (-)
LOC110527983 LOC106583010 coding upstream 88824 52785667 ~ 52841769 (-)
pad LOC106583007 coding upstream 393594 53090437 ~ 53105864 (-)
LOC118965299 NA coding upstream 672791 53368443 ~ 53373429 (-)
LOC101268938 cd34 coding upstream 683658 53380501 ~ 53400793 (-)
LOC110527988 plxna2 coding upstream 733104 53429947 ~ 53486228 (-)
G622061 NA non-coding downstream 16623 52673023 ~ 52674718 (-)
G621993 NA non-coding downstream 128581 52562549 ~ 52562760 (-)
G621988 NA non-coding downstream 133785 52557243 ~ 52557556 (-)
G621955 NA non-coding downstream 184370 52506727 ~ 52506971 (-)
G622088 NA non-coding upstream 23898 52720741 ~ 52720961 (-)
G622357 NA non-coding upstream 152050 52848893 ~ 52857351 (-)
G622358 NA non-coding upstream 152840 52849683 ~ 52857693 (-)
G622359 NA non-coding upstream 153648 52850491 ~ 52858404 (-)
G622362 NA non-coding upstream 163108 52859951 ~ 52860161 (-)
G619733 NA other downstream 1732801 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 2385185 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 2755060 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 3394093 49295040 ~ 49297305 (-)
G617632 NA other downstream 3495371 49195604 ~ 49195970 (-)
G622985 NA other upstream 608693 53305536 ~ 53322831 (-)
G625426 NA other upstream 2375636 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 2467649 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 2736613 55420466 ~ 55566988 (-)
G627254 NA other upstream 3994480 56691323 ~ 56696091 (-)

Expression


Co-expression Network