pad (LOC106583007)


Basic Information

Item Value
gene id pad
gene name LOC106583007
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53090437 ~ 53105864 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160501.1
TGCAACGTAGCCTATCACCATGAATGTTTCCCAGGAGCAAGTTTCTTTGACCGGGCACCCTAATCTCTTTCAGCACTTTAATAGAATAGCCACCAACAAACCAGTAGACCAGATGTACCAACGGACATTTCGCCTCGACACTGGGAAAACTTTGAGGGCCCTTTACGTTGTCGGCACAGTGTTGAAAGTGAACCTGAACAGGAGTGCCCCTCCCAGCTCCACGTACTTCTCTGTGAAATGTAGCCCCAACGTGCAGTACAGGATTACCCCACCCCCAGCGAAGAGTGGACCAATCCCCACCCCTTTCAATGGGAATACAGTGCTTCTTCTCACCATGGACACTGCCAGCGAAGTGGAAAATGATAGCAAGCTATCGGTCATGTATTATGGAAAGAAGAAGGAGGTGTTGGGTAAAGCTGTCGTTCACCTCACTGCTTTTGAGATCTCCCTGGATGTTGATGCTGATCGAGATGGCCAGGTGGAGAGGAACAACCCCAACAAGGGATCCTGGATGTGGGGGCCTAATGGCCACGGTGCCATCCTACTGGTCAACTGTGACTCAGAACACACCTGTCGGAAGAGCCTGGACAGTGAGCATGCTGAGGTCACCAGAGTCTCAGATCTTAAAGATATGTCCCCCATGGTGCTGCGGACCAGTGGCCCTGCCAAGCTCCCAGAAGGCTACAAGCTGACCATGCACATCTCCCAGGGTGATGCAGAGTGTGTGAGGGTCTTCAGGTCCACAGCAGGCATGCACCAAACCCTGAaaaaaaacctgttttacaaGAGCTTTGTGAAGGACTACCCACTAGTGGTGGGAGGTGAGGATCTGTCCAAGGAGGTACCTTGCCTCTGGGGAAACGCTGAGATGAACTTTTACGTTGAAGGCCTGAGGTTCCCTGACAAAGACTTTGAGGGCCTAATCAGCATCAACCTCAGCATGCTGGAGCCGAGCTCTCAGGGCTTTCCTGAGACGCCCATCTTTACAGACAGGGTGGTGTTCCGAGTGGCTCCCTGGATCATGACACCCAACACACTCGACCCTGTAGAGGTTTTTGTCTGCAGCACAACTGATAATGACCCATTCTTAAAGAGAATGAGGAGGCTAGTGAAGAACAGTGGGTGCAAACTGAAGATTTGCCCTGAGGATATGAACAGAGGAGACCGTTGGATGCAGGATGAGATTGAGTTTGGCTACATTGATTCTCCTCACCAACGTTTCCCTGTTGTTCTGGACTCCCCCCGAGACGGAGACCTACAGGACTTCCCTTATGATGTGCTACTGGGCCAAGACTTTGGCTATGTGACTAGGACAGCATATGGCAAAGAAGTGAGCAGCCTGGACTCGTTTGGTAACCTGGAGGTTAGCCCTCCAGTCACTGTAAATGGAAAGAACTACCCTCTGGGTAGGATCATCATTGGAGTGGCCTTCCCTACGGCTACTAAGGGCCGCAACATGACCAAAGTAGTGCAAGACTTCCTGTGGGCCCAGAAAGTCCAGGAGCCCATTGCGTTATTCTCTGATTGGCTCCTGGTTGGGCATGTGGATGAATTCATGACCTTCGTCCCAGCTCCGGACAAAAAGGGATTCCGGCTTCTGCTCGCCAGCCCCGATGCAAGCTACAAACTATTCAGGGGCTTACAGAATGGCGGGCATGGACAAGCCAAAatgtttgatgGTCTTGGAGCAGAAGAGATTACAGTAGATGAGATTTTGAGTGACGAGAAACTCAAGGCAGAAAACAACTATGTCCAGagctgtatagactgGAACAGGGATGTCCTGAAGAGGGAGCTGGGTCTAGACGACGATGACATCATTGACCTGCCCATCCTTTTCCATGTGATGGAGAACAGGGCAGTGGCCTACTACCCAGACATGGTAAACATGATTGTGTTGGGAAAGAACCTGGGCATCCCTAAGCCATTTGGGCCCAAGGTGGATGGCCGCTGTGCCCTGGAGGCAGAGATGACCTCCCTCATGGAGGGGCTGGGACTCAGCTGCACATACATTGATGACTTTGCCTCCTACCACAAACTGCTGGGAGAGGTTCACTGTGGCTCCAATGTCCGCAGGGAACCGTTCTCCTTCAAGTGGTGGAACCTGGAGATGTGAAGGATTTGGGGGGAAGGAACGGTTGTAGTTAGAAAGAGGGAATCATGCTTGAAATAAACAGCAGTAACAATCACCAGCAGCAGTTGCCTTCAAACAACCACAGTAGTCCTCCAATGGTATTACACCTTtgtctttattaaacatattTGGCTTAATTTACAAAAGGGTGAAAAGCAATATTTACAAACAAGACTTTGGAACTTGAACAAGGGTTTAAGCGGACTGTCAACGAGAAGAGCAATACAATCACCTGAATCAAGCACATTGCAAATTAGATCTGTTGTTTGAATTGGCTGGGGGCTCAATCCAAATGTCTTGCATGTACAAACAGAACAACAGGACCACAGAGAAATGTGCAAATATAATCTGGAGCCACTGGAGGTAATCCAACTACTGGTATTCAAGAATTTTACAAAGACCAGTGAGACCTTTGtgataaaagtttttttttaatatattttgagTTTGTGTGCAATACACACTGACTCCAAAGGCTCTGTTAACATGATGAAACTTTATCATCTTTCCAATGACTTGTGGTGTTTTTATGATTAAATGCAAGACTAGCTGTATTTTGGTGTAGTGTTACTTAGACAGGGATCCTTAAGATTCAACTAAAAGATTTCAAAAATATTGTATGAAAACCGAATGTACTAATGTCACAACAGAGAAAGCACAACTAAATTCCACATTGGCTCTTCATTTCATTGAAATAAAAAGTAATGAAAACCA

Function

NR:

description
protein-arginine deiminase type-2-like

GO:

id name namespace
GO:0018101 protein citrullination biological_process
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004668 protein-arginine deiminase activity molecular_function

KEGG:

id description
K01481 E3.5.3.15; protein-arginine deiminase

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160501.1 True 2848 mRNA 0.48 16 53090437 53105864

Neighbor

gene id symbol gene type direction distance location
LOC110527983 LOC106583010 coding downstream 248668 52785667 ~ 52841769 (-)
gnl3 LOC106583012 coding downstream 393594 52691341 ~ 52696843 (-)
LOC118965418 NA coding downstream 395961 52694402 ~ 52694476 (-)
LOC118965422 NA coding downstream 396418 52693944 ~ 52694019 (-)
LOC118965420 NA coding downstream 397338 52693025 ~ 52693099 (-)
LOC118965299 NA coding upstream 263770 53368443 ~ 53373429 (-)
LOC101268938 cd34 coding upstream 274637 53380501 ~ 53400793 (-)
LOC110527988 plxna2 coding upstream 324083 53429947 ~ 53486228 (-)
LOC118965356 NA coding upstream 420984 53526848 ~ 53530100 (-)
kif17 kif17 coding upstream 483974 53589838 ~ 53602153 (-)
G622347 NA non-coding downstream 187305 52898545 ~ 52903132 (-)
G622374 NA non-coding downstream 208826 52878752 ~ 52881611 (-)
G622366 NA non-coding downstream 217706 52869067 ~ 52872731 (-)
G622364 NA non-coding downstream 228981 52861239 ~ 52861456 (-)
G622362 NA non-coding downstream 230276 52859951 ~ 52860161 (-)
G622512 NA non-coding upstream 17401 53123265 ~ 53123699 (-)
G622514 NA non-coding upstream 19295 53125159 ~ 53125391 (-)
G622517 NA non-coding upstream 28975 53134839 ~ 53136930 (-)
G622528 NA non-coding upstream 34208 53140072 ~ 53140363 (-)
G622534 NA non-coding upstream 39552 53145416 ~ 53145784 (-)
G619733 NA other downstream 2131897 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 2784281 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 3154156 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 3793189 49295040 ~ 49297305 (-)
G617632 NA other downstream 3894467 49195604 ~ 49195970 (-)
G622985 NA other upstream 199672 53305536 ~ 53322831 (-)
G625426 NA other upstream 1966615 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 2058628 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 2327592 55420466 ~ 55566988 (-)
G627254 NA other upstream 3585459 56691323 ~ 56696091 (-)

Expression


Co-expression Network