LOC118965298


Basic Information

Item Value
gene id LOC118965298
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53321171 ~ 53322811 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052606.1
ACCTACATTTAATAATTTATCTTTTTCGAAAATAGTCCATGATTAAGCACGATTTCACCTACAACTAAATCAAAGATTATATTTTCCTCTTACTAACTATACTGTATGTGCATTAACCACAGCTTCTGGCAACTGACTTACACCGTCATTAAATCAAAAAATTATTTGGATAAACTAGCTATACGGTTGGCCAATTAATTGACCAAAACAATATTTGTTAACAAAACTTTATTTACATAACCCATCAACTAACATTCAGTCTGGCCATGGGCatttatactgtatttatttattccctACAGTATCTGTGATTTGCATGATCAAACTTTTTGCTGGTTACTTTTCCCTGTTTTGGCCAAAAAATTACATTTTTCCTGCAGTGTGTTGAAAAATCAAAATAGTAAGGAAACCCTTTGCAAAGGCACTCTCGGACAGATATTGGCTTTGAAAAAGAGAATAGAGTATGTTGTTCTAaagggaggtggggtagtaggcTAGGCTATACACAGTGCTGAGCTGACCAGCTTTCTAACTGCCTaccacactggaacacacaaACTACCCAACTAAAACACTGCTAAAATACTGAGATTGGCATGCAGAATATATTTCTTTACTGCACTATTATATGTAAACATGGTAATCCTGACAAACTGTCATTGTTTGAAAATGATACATAGCTCGTACCAGTTTGGAGAAGACCGAAGTCGAACAGAGGAATTATTACAATTTCAAAATAACTAAGTTGAATGCCTACCCAAGGGCTAGGACTGCACCTATCTGCTAGTCTGCATCTGTAGCCTTGAAAAGTAGTGCCAGCGGATTGTTCCTCTTTTATTAAGTTGTTTTTGAAAGTCAGTTCAGCGGAAATGTTTTAACCCAATGTTCTATTtatatacaaaactgaaatatacgTAATTGTCTTTTCAACTGCCATATTTGACTACAGGTTGCTAGCTTGCTCTGTTGTGTGGGCAGAAGCCCCTGTAATGAGATTAGTGcactaaaaaaaatgtatgattgAGGAAATCCCCAGGCTGATAATCACTGACCATTTGTAAATGTGTGCTTACTGATCGTGGCTCACAGGAAAATAACAGTAAGAGACAGTTTCCTGGACCCAGGTTAAGCCTACAGCACTGTATTCCTTTTCAAGTAGGCTTAATCTGGGTCCAGGAAACCAGCTCTTCATGTTATTTTCCTGCAGTCCCAAATGTCACAAAATAACGTCAATCTTATTTACTTAGAGGTTTTGTACTTATATTTGATAGTGTGTATTGTGTGATTTAAGAGATCAAATAATTGTCATGATAACTGCCTTTTCTCATTCTTTGAGACACGTGTAAATATGTGTAACGAATGTCgtctagagaaagagaggaggaccgaaccgcagcgtggtaaatgttcataattttaattaaagaaagcactgaacactgaa

Function

NR:

description
complement decay-accelerating factor-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052606.1 True 1444 mRNA 0.37 2 53321171 53322811

Neighbor

gene id symbol gene type direction distance location
LOC110527986 LOC106565872 coding upstream 26487 53150043 ~ 53294684 (+)
lrig2 LOC106583004 coding upstream 184206 53127421 ~ 53136965 (+)
LOC110527984 LOC106583006 coding upstream 230117 52922877 ~ 53091054 (+)
glut1a glut1a coding upstream 418035 52882500 ~ 52903136 (+)
LOC110527982 LOC106565863 coding upstream 537879 52736601 ~ 52783292 (+)
LOC110527990 LOC106583000 coding downstream 207422 53530233 ~ 53546191 (+)
LOC110527992 pfkfb2 coding downstream 229497 53552308 ~ 53563191 (+)
LOC110527995 yod1 coding downstream 246698 53569509 ~ 53574407 (+)
LOC110527993 cssa22h1orf116 coding downstream 259124 53581935 ~ 53637160 (+)
LOC110527998 ppb coding downstream 409144 53731955 ~ 53750439 (+)
G622538 NA non-coding upstream 172656 53148309 ~ 53148515 (+)
G622316 NA non-coding upstream 181405 53139553 ~ 53139766 (+)
G622304 NA non-coding upstream 204582 53104550 ~ 53116589 (+)
G622216 NA non-coding upstream 344528 52958978 ~ 52976643 (+)
G622182 NA non-coding upstream 412357 52908609 ~ 52908814 (+)
G622641 NA non-coding downstream 34580 53357391 ~ 53403946 (+)
G622662 NA non-coding downstream 83023 53405834 ~ 53411747 (+)
G622669 NA non-coding downstream 91699 53414510 ~ 53414798 (+)
G622706 NA non-coding downstream 201556 53524367 ~ 53527401 (+)
G621695 LOC106582949 other upstream 827931 52491168 ~ 52493240 (+)
G621650 NA other upstream 929538 52391348 ~ 52391633 (+)
LOC110527970 LOC106583026 other upstream 2247164 50960494 ~ 51079129 (+)
G618712 LOC106583033 other upstream 3016939 50303430 ~ 50304232 (+)
tafa4b LOC106583040 other upstream 3701003 49571790 ~ 49620194 (+)
G623180 NA other downstream 431095 53753906 ~ 53754119 (+)
G624628 NA other downstream 1500826 54823637 ~ 54824199 (+)
G624962 LOC106582975 other downstream 1724485 55047296 ~ 55052688 (+)
LOC110528007 LOC106582974 other downstream 1747821 55053185 ~ 55074095 (+)
LOC110527126 LOC106582962 other downstream 1884850 55207615 ~ 55208708 (+)

Expression


Co-expression Network