LOC118965299


Basic Information

Item Value
gene id LOC118965299
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53368443 ~ 53373429 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052607.1
GGGGCGGGCTTTGAGTGTTGCGCTATGGAAAAATCGATGGGGATACTGTAATAATGTGAGGGCTGCTTTATGGAAACAGGTGCTGTCCAGTTATTGAAAACATGATCTAGCCGAAAGGATCGCCAAGGGAGGAAAGAAGACATGCGTTGAGAGTCCCTGGGGAGGTTCTCAGGGCGATGAGGAATGCAATATACCCTCAACACTTCATGCCTCAAACCTTATGTTTTTCCTCTGCCTCACTGCACCTCAGTGAAGTAGTCAAAAACGCTTTGCTGTGCCATCTCCTTCATCGTTTCTGCTATCTATCATGTAAGTCAATGTGCCCCTTCCTCTAACAATTATACAAGATATCCCATACAAAACATGGGGATAGATTACCATTTTTCATACGATTAACTTTAACAGTTTTGAATGTTAATGTACCTCCATTATCTCATTGCATGTCAGCTAAATTAGGACCTCTAATCTATCAGAGGATAATCTGTCAATGCTTTGTCATCACctacccccctccacccctcctgcaTGTTATGTCAGTATGCCTTAAAGTATACATGGCTCTACAAAAATGTGTATGTATCACATAGGCGTTGCAATACCAACTGACACACTTGAcagcctaaaaaaaaaaaaaaaagggccaCACAACGGCCTCCCTGTTTTGGTTTAAAAGGGAACGATGCACCTTTAAAAGCAGTTGACAGTCTGGTGACTTGGTAAGCAAAAGTGAACTCAGCTCTGAAGCAGAAAACAGAGCAACTGCGAACAGTATGGAGAAATAGAGAGCgagaaaacaaacaaatgaaAGAGGGAAAGAATTTGACAATGTTGAAGCAGGGAGG
>XR_005052608.1
GGGGCGGGCTTTGAGTGTTGCGCTATGGAAAAATCGATGGGGATACTGTAATAATGTGAGGGCTGCTTTATGGAAACAGGTGCTGTCCAGTTATTGAAAACATGATCTAGCCGAAAGGATCGCCAAGGGAGGAAAGAAGACATGCGTTGAGGTAAGCTATCAGGCTAAATCATAGTTTTATTCTAGGAATTACTGAGACGTGTTGCCAATTTCAGTAGCCTAATGCAAACGATGTTGTAACGACACATTTATCTAATGCAATGTGTTATCACAAACATCTATAAACAAATCTGATATAGCCTATAATATAGTGATTGTGGATATGGTCCTCTTAAAATGCTCTTCGCCGTCAAATAAATATGAAAGTGCCAATTTAGTAAACGTTACATATAGTGGAGGTAGTAAACTAATCTAATACAATTACCATTCTCAATTATAATCGACAGGTAAATAGTTACATTTGTCTGCGTCAGAGCGAGTGCTATTGTGACAAACGCAATGGAATCCGGTGGGAATTGTAGCCTACCCCGCAGATACGGGAAACCCCTCAGAAACATAGCATGAAGCCGATTACTTAATATAGGCTATTTGTTCTGGATAGAGGAATGTTAGGCAGGCTAAAACTGTTTGCGACGAGATGGCGTGTGAAGCGGGGATTGGGAATAGGATGCTGCGCAAGAGATGGATGTGCGTAAATAGCGAGGAGGATGTTACGCACTTGCACTTAATATTGGCATGATCACTACTTATTTCCTCATGGCCGTTTAAAACATCATCAAACACAATAAAGCCCAATAATAAAATCAAGACAGAAAATTATCCAAAAAAGTACTTGTTTACAAAACAAGCTGTTACCGATTAAATTAAGTTACTGTAGACTATATAGTCATGTTTATAATTAGTAAGTTCACGTTTATAAAAGGACTATGCGTGCTACTTACATAATATATTAATATGAATCTTGTGACTTATGTGAATAAAGGCCATACTGACATATTTGGTGTTGTGATTGCATGACAGTGCGCACTTGATATACCTAGATGTAAACAAACCAAAACACCATGTAGGCTACTTCCCAGGAGTGTAGGGGCGCTGTTGGGCATATTCACATGACTTGACTTTTCTCCATTCGTGGCAATGCATTATCATCTCCAGCTCTAGTATATAGGCTTCATATTAAGTAGATATTTTTGGAACATATTACAATAATTTACAGACAGAATAATCAACTGAAGGGGCCTAAATGAGCTCAGTTTTAAATTGTGAAAAATAAGAGAAGCTAACCCCCTGGATTTCTCCTATTCTGTATTGGCATGACAGGATGTACAAATAACGTTAAGTCAGTGAGCAGGCTTGCCTCGTTTCTATTGGGAACATAATTAAATGTACACCTGCCAGAGAAAGCCTTTTTCACAATAGGTGCTCGACACAACTGTTTGTGATGCCACTTATTGTTGACAGTCAAACcacaacccactgggcaaaaactggttgaatcaatgttgtttccatgtcatttcaaccccaACATTTTATATGACAACGTTGAATCAACAtgaaaaactgattggatttgaaaaaaagtaatcaacgtaaatggaatttagtatttttttctcttaacttttaacctaaatccaatgacctAGTGACATTTTTTGTTAATTTAATGTTGAATTCATGTTAGCTGACAACTCAACCAATTGTAAATTTGAACTAGATGAACTGACATCTGTGTCCAGTGGGAAGCTTCCCAGCCCTGGCTAATGACCTTAATTATCGATGTCTAGGTCCATCCCATTGCTTCACCCTGGGGGGCAGGTCATGAAACTCCACAGGTGAAAATGATTCACAGTACAGGACCATCACTGATCGCCCCCACCAAGTAGATCTGCCCAGTCACTAAAAAGAGTCTGTCAGTATGCTAGTATGTCAAAAAGAAAGGTGCATTAAAATAACTTCCCATGTTATATTCTGAATAGAAAGACGCATTCAAGCTTGCAAGATGCTGTAGACTGACTCGATTATTTTATGTTTCTATATATTTTGATATATAAAAAAAGCTGTTTCATAACAAAGAATTCAAACGTTTACCATACCCACCCTCTTACTGACCAGTTAATGATCTGGCCCACTTTCAGAGACAAGGAAAATCTGTGACATCAATAGCAGTTTTTCTGCTGTTCCAGTCAAACAAACAGAAGCAGACACACGTGTTTAAGAACAACATTTCTTAATTTAAAATTGCTGCAGTATTTCACAATGTTTTTGTTGAGGTCTATGAAACAAAAACTTAAAATGTGCAATTTAAATTAATTTAGCAAAATCAGGTGCTATCTCTGTCTGCCAATACTCTGCCTCTGTCAATCCGTAGCAATGACAGGAAAACATCCAAACTAAATGTTGTTGTTTACTGCAGGAACTTAATCACATGTAAAttaaattgagaaaaaaaaagagacacTGGCACCTGTCTTTACAACAGAGCCTTATCCCTCCTACATGGAGCTGAGAGTTTGGATGGTGGAATACTGCTGAGAGATGACAGTGCTAAAATTAAACCCCACTGCCTGCTGGATGATGATGTATAAATAGACAAGTGGGAAGAAGCGGTGTTCGTTCACAGGCATCATTATCAGCTCTGCACTTAAAGTGTTGCTGAGGGGAAAAACCTCTTGCGCAATTTTTATGTATTTGCGTCGCTTTGttatattaatactataatactataataatactATTTATTTCCAATACGTCACTGAGATGCAAAACTCCATTAGAGTAATTATCTGCATATACAGCAGTAAATTGCTTCATGTGAAGCCTAGTGAACCCATGGACTACTGACCAAAGTATTTGTACGAAACAGAAAAACCTGCAGATCATTTGTCTTCCACTCTCAGATCATGTGACATGCAGCTTATATTTCACTACAGGCAGAGCAAGAGGTGGAACAGGATAGTCCCTGGGGAGGTTCTCAGGGCGATGAGGAATGCAATATACCCTCAACACTTCATGCCTCAAACCTTATGTTTTTCCTCTGCCTCACTGCACCTCAGTGAAGTAGTCAAAAACGCTTTGCTGTGCCATCTCCTTCATCGTTTCTGCTATCTATCATGTAAGTCAATGTGCCCCTTCCTCTAACAATTATACAAGATATCCCATACAAAACATGGGGATAGATTACCATTTTTCATACGATTAACTTTAACAGTTTTGAATGTTAATGTACCTCCATTATCTCATTGCATGTCAGCTAAATTAGGACCTCTAATCTATCAGAGGATAATCTGTCAATGCTTTGTCATCACctacccccctccacccctcctgcaTGTTATGTCAGTATGCCTTAAAGTATACATGGCTCTACAAAAATGTGTATGTATCACATAGGCGTTGCAATACCAACTGACACACTTGAcagcctaaaaaaaaaaaaaaaagggccaCACAACGGCCTCCCTGTTTTGGTTTAAAAGGGAACGATGCACCTTTAAAAGCAGTTGACAGTCTGGTGACTTGGTAAGCAAAAGTGAACTCAGCTCTGAAGCAGAAAACAGAGCAACTGCGAACAGTATGGAGAAATAGAGAGCgagaaaacaaacaaatgaaAGAGGGAAAGAATTTGACAATGTTGAAGCAGGGAGG
>TU708580
TAATAATGTGAGGGCTGCTTTATGGAAACAGGTGCTGTCCAGTTATTGAAAACATGATCTAGCCGAAAGGATCGCCAAGGGAGGAAAGAAGACATGCGTTGAGAGTCCCTGGGGAGGTTCTCAGGGCGATGAGGAATGCAATATACCCTCAACACTTCATGCCTCAAACCTTATGTTTTTCCTCTGCCTCACTGCACCTCAGTGAAGTAGTCAAAAACGCTTTGCTGTGCCATCTCCTTCATCGTTTCTGCTATCTATCATGTAAGTCAATGTGCCCCTTCCTCTAACAATTATACAAGATATCCCATACAAAACATGGGGATAGATTACCATTTTTCATACGATTAACTTTAACAGTTTTGAATGTTAATGTACCTCCATTATCTCATTGCATGTCAGCTAAATTAGGACCTCTAATCTATCAGAGGATAATCTGTCAATGCTTTGTCATCACctacccccctccacccctcctgcaTGTTATGTCAGTATGCCTTAAAGTATACATGGCTCTACAAAAATGTGTATGTATCACATAGGCGTTGCAATACCAACTGACACACTTGAcagcctaaaaaaaaaaaaaaaagggccaCACAACGGCCTCCCTGTTTTGGTTTAAAAGGGAACGATGCACCTTTAAAAGCAGTTGACAGTCTGGTGACTTGGTAAGCAAAAGTGAACTCAGCTCTGAAGCAGAAAACAGAGCAACTGCGAACAGTATGGAGAAATAGAGAGCgagaaaacaaacaaatgaaAGAGGGAAAGAATTTGACAATGTTGAAGCAGGGAGGTAAAGAGAAGATCGAAAAAAACAGGGtgagggaagaaagaggaggtcGCGGTGACCCTAGAACTAGATGACGGTATAGTGGTGAGGCTGCCAGCCTGAGTAGTTCAAGAAGCTGCATTCAATGTGTTTAGGTATACAGGGGGAATTCCTGGAACTGCTGAATAAATTCATTGGAGAGACCATGAGCTTACACACTAGTCTTAAGAGCTTCTGGTTGTGAGTGAGGCTGACTGTCAAACTAAACTTTGTTGTGAAAAAAGAACACAACCAATCTGGTAATGTAACAGTCATTGTAGTGGAGGATATGGCAAATTGTGAGAGGTAGACAGAAGAGGATATTTTGGAATTAGTTATGTCAGTTTTTTTTTATGTCGGTAGAGCAACAGCCAGGGTAATTTTATTTTCAATTAGGAATAACTTTAAAGCCTGTTTACCTTGCCctccattttttaaatgtttgtattCATAATTTGTGCTCTACTGCTTTGTCATTTGAGATGCTGTCTTCTTTCAGGGAAGGGTGTGGATGCCTGCAGGATGCTGATTATGTGGCAGCCAGATGTTCTACTTTGGAATTAATATTCCTGCAGTGAGAGATATTCCTGTTTTATTCTTATTCCAGATAATTTCTCCTCTGTAATACTCTGACACCTGCAGTGAAACCCTTAATTGGCCAAAAGACTGTATGCTTGGCGAATGGACAGAGGGAGGCTCAGGGGAGGATGGATACAAGGCATGTGTTGATTTTCAGGAAATCCGCAGGAGACAAAGGAGAGCCATGGGGAGCTAGACATCACTTTTTTTTACCCTGGCCATGGTGCCAACCAGCTGCACCCTCCCTTCCTACCCACTTTTTCTGCAGTGAGAGCAAGGGTGAGTGGCATACTTTTCCTGCCAGGAAGTAAGTTGCAGTGTGGCTCTTGGAGGCCTTGACGGATtgatccctctcctcctcagtgTGCCAGCAGAGCGACCAGCTGGTTATGTGCCTTTTTCTtctgttgtctccttctccttgctctcgctctctgtctctctccaagcCCTGTCAGCCAGGGGAGGGTTCCAGGCTATGCTTCCTGGAAGAACTTCCCTTTTAAAGCGGCATCATAGAGCCCTGTATATCATGGCTCCAGATTAGAGAGTAGTAGTAATGGGATGGAATACTTTATCATGCAGCAACTGTAACACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052607.1 False 842 mRNA 0.43 2 53369634 53373429
XR_005052608.1 False 3651 mRNA 0.39 2 53369634 53373429
TU708580 True 1985 lncRNA 0.44 2 53368443 53373381

Neighbor

gene id symbol gene type direction distance location
pad LOC106583007 coding downstream 263770 53090437 ~ 53105864 (-)
LOC110527983 LOC106583010 coding downstream 527865 52785667 ~ 52841769 (-)
LOC118965418 NA coding downstream 675158 52694402 ~ 52694476 (-)
LOC118965422 NA coding downstream 675615 52693944 ~ 52694019 (-)
LOC118965420 NA coding downstream 676535 52693025 ~ 52693099 (-)
LOC101268938 cd34 coding upstream 7072 53380501 ~ 53400793 (-)
LOC110527988 plxna2 coding upstream 56518 53429947 ~ 53486228 (-)
LOC118965356 NA coding upstream 153419 53526848 ~ 53530100 (-)
kif17 kif17 coding upstream 216409 53589838 ~ 53602153 (-)
LOC110527994 LOC106582994 coding upstream 240138 53613567 ~ 53623906 (-)
G622987 NA non-coding downstream 43644 53303844 ~ 53325990 (-)
G622991 NA non-coding downstream 49928 53317862 ~ 53319706 (-)
G622874 LOC105006631 non-coding downstream 125792 53150477 ~ 53243842 (-)
G622534 NA non-coding downstream 223850 53145416 ~ 53145784 (-)
G622528 NA non-coding downstream 229271 53140072 ~ 53140363 (-)
G623013 NA non-coding upstream 32601 53406030 ~ 53411743 (-)
G623018 LOC106581772 non-coding upstream 39501 53412930 ~ 53413188 (-)
G623173 NA non-coding upstream 361619 53735048 ~ 53737808 (-)
G623176 NA non-coding upstream 367925 53741354 ~ 53748563 (-)
G622985 NA other downstream 46803 53305536 ~ 53322831 (-)
G619733 NA other downstream 2411094 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 3063478 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 3433353 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 4072386 49295040 ~ 49297305 (-)
G625426 NA other upstream 1699050 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 1791063 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 2060027 55420466 ~ 55566988 (-)
G627254 NA other upstream 3317894 56691323 ~ 56696091 (-)
G627314 NA other upstream 3461156 56834350 ~ 56835092 (-)

Expression


Co-expression Network