LOC101268938 (cd34)


Basic Information

Item Value
gene id LOC101268938
gene name cd34
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53380501 ~ 53400793 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609701.2
AAGTGGCGCTTTATCCGCCCCGCTCAAGATAGGAGGAAaccctccttctctgtcacacATTCACACTGGACAGGAGGAGAATGTTAGCAGCAGCATCCAAAAGGAGAATGACTGAGACCCACAAAATGATGGCTTTCGCTTTGCTTTTCATCGCCACACTCCTTCACGGTGGCGTAGTTGCAGAATATGAGGTTGTTACTGGGCTCACACGGCCAGTGAATGATGCTGGAGTCATTCGTGGGGATGACATTGATACTACACAACTGTCAGATGAAGAAGCAGATACACCCTTTTTCCAGATCATTGTATTCCCCAGTATTCCTGGACTGGACCTCTCAGACATTTTAGATGACACCACAGCGGCTCCAGTCACCAAGGTGGTAGAGGAGACCACAGACATGAGGGAGGCCACAGAGAAGACTGGTGAAGCAGCAACCACAGACGACAACCAGGAGACCCAGGCTCCCCAGCAGATTCTGATCTCCCAGTCAAGTGACATGGTGCTCATTCCAGAGGCTGGTGTGATGTGTGTTGATAAACAAGCGGTCCAGGACAGAGATGCAGTGAGTCTGAAACTAAAGGCCTCGTCCAGCTGTGAAGAGACCAGGTCTAAAATTGAAAGTGTTCTGGAGCACCTGTGTGGGGTCGACTGTAAACTGGAGGTCTTTCAGGAGGACAACTCTAATGAAATCCTGATCTTTGGCCAATACATAGAAGCTGATGCTAAAGGAATGGCAGAGAAGTTCAACAATGACAATATAAAAGACAAGATTGATTTTGAGGAAGCTGTTCCTCGCTGGGGGAAGAACTCCAAGCTAGTGCTGGTCTCCCTGCTGCTCACTGGACTGCTCCTGGCTATTCTTCTCATTGCAGGCTACTACCTGAAAACCCACCGCCCACCACCCAAGGGAGCGAGACTGGCCGAAGAGGGTTTCCAGGTGGATGAGGAGAACCAGGCCAACACTCTGGTATCTGTGGCCCCTCTGCAACCACAGGATCCCCTGGACAAGCCCCCCACCAACGGCCACTCCGCCACCCAGACCCCCGTTGCCGACACCGAAATGTGAACAAGCTCTGAAGGACACCCCCACCGCCCCATTCCTCCATCACCACATTCCCAATACCTCTCCCCCTTAGAGTTACCTGGGGATACTGCACTCTGACACGGACAAAGATTCAACATCCAACCCCACCTGATCCAACCCTCCACCCCCAGGATGATGACAATGAGGAAACTGATGACGACGATgcctgtaatgtgaagaacagATTGTGATCACTGGCCTCTATTAGGTTTCAGTAGCGTCAGAGAAGGAGCCTAAACTCAGTTTGGGGGACTGGACAGCTGGGACACAGACTGCAGTCCAGAAACAATAATCACAGCAAAGAAAGGGCAACAGATCACCAAAATTGACAGTTTGTGTTTCCAAATTCAAGTATAAATCAAGGTATATGCTATATCTTAAACACTTGCAGATCTGAAATGTACTCATTTGAACTAAAGCGTCATTGTAGTTTAAAGTATTGATTGCTTGGTTCATTTGTTTGTATGATCTTATGTGATTGTTTGCTTGACTCGCCTGTTCGAGGTAAGAAGTCAAATTTGGGTAACAGAAGTGGAGAAAGAGTGATTCAATTAATGGAGATAATTTGAACCATTGAAGAGGTTGAATAGGCAGCTTTAAAATAAGTATCGATATGACTGGCTAGTGCAGAGCTCAGAGTTGAATCCTGTTGCCGTTAATCGAGGCCTGTCATAAATTGTGTGAGGGGCTGCCGTATGTTTGTTTCAGAATTATGTACAGTAGGCTTAGTGTGTCACTATTTATCAAGACAAACTTTCTATTGTACAgtttttttaaacatgtttttttctgttCTGACTTACCACTGTGTCTTTGAGAATGTTGAACCAGGTAGACTCATTTTATCATTCAGGAAAACAGACTGATCAAATTCGCCCACAAAACTTGTCTATAATATTAGTCTCTATGGTGCACTGCCGCTAGATTTTTGACAAAACCCCTAAACATATTCAACATTTCAAAGACACTTTATGTCCTCAATGAATCAGTCCATCATGAAACATACATGCATGGATGAAAGTGAAGCTGTATTTTAGCTATTGTTTTTTAAGGACTGATTGTTTTCATACAATATTGCATGTGTACATATGCCCTTTTTCTCGGTTTGTAATATCTGTGTCCCACATAAATTGCGATTGTGTCAATGTT
>XM_021609702.2
AAGTGGCGCTTTATCCGCCCCGCTCAAGATAGGAGGAAaccctccttctctgtcacacATTCACACTGGACAGGAGGAGAATGTTAGCAGCAGCATCCAAAAGGAGAATGACTGAGACCCACAAAATGATGGCTTTCGCTTTGCTTTTCATCGCCACACTCCTTCACGGTGGCGTAGTTGCAGAATATGAGGTTGTTACTGGGCTCACACGGCCAGTGAATGATGCTGGAGTCATTCGTGGGGATGACATTGATACTACACAACTGTCAGATGAAGCAGATACACCCTTTTTCCAGATCATTGTATTCCCCAGTATTCCTGGACTGGACCTCTCAGACATTTTAGATGACACCACAGCGGCTCCAGTCACCAAGGTGGTAGAGGAGACCACAGACATGAGGGAGGCCACAGAGAAGACTGGTGAAGCAGCAACCACAGACGACAACCAGGAGACCCAGGCTCCCCAGCAGATTCTGATCTCCCAGTCAAGTGACATGGTGCTCATTCCAGAGGCTGGTGTGATGTGTGTTGATAAACAAGCGGTCCAGGACAGAGATGCAGTGAGTCTGAAACTAAAGGCCTCGTCCAGCTGTGAAGAGACCAGGTCTAAAATTGAAAGTGTTCTGGAGCACCTGTGTGGGGTCGACTGTAAACTGGAGGTCTTTCAGGAGGACAACTCTAATGAAATCCTGATCTTTGGCCAATACATAGAAGCTGATGCTAAAGGAATGGCAGAGAAGTTCAACAATGACAATATAAAAGACAAGATTGATTTTGAGGAAGCTGTTCCTCGCTGGGGGAAGAACTCCAAGCTAGTGCTGGTCTCCCTGCTGCTCACTGGACTGCTCCTGGCTATTCTTCTCATTGCAGGCTACTACCTGAAAACCCACCGCCCACCACCCAAGGGAGCGAGACTGGCCGAAGAGGGTTTCCAGGTGGATGAGGAGAACCAGGCCAACACTCTGGTATCTGTGGCCCCTCTGCAACCACAGGATCCCCTGGACAAGCCCCCCACCAACGGCCACTCCGCCACCCAGACCCCCGTTGCCGACACCGAAATGTGAACAAGCTCTGAAGGACACCCCCACCGCCCCATTCCTCCATCACCACATTCCCAATACCTCTCCCCCTTAGAGTTACCTGGGGATACTGCACTCTGACACGGACAAAGATTCAACATCCAACCCCACCTGATCCAACCCTCCACCCCCAGGATGATGACAATGAGGAAACTGATGACGACGATgcctgtaatgtgaagaacagATTGTGATCACTGGCCTCTATTAGGTTTCAGTAGCGTCAGAGAAGGAGCCTAAACTCAGTTTGGGGGACTGGACAGCTGGGACACAGACTGCAGTCCAGAAACAATAATCACAGCAAAGAAAGGGCAACAGATCACCAAAATTGACAGTTTGTGTTTCCAAATTCAAGTATAAATCAAGGTATATGCTATATCTTAAACACTTGCAGATCTGAAATGTACTCATTTGAACTAAAGCGTCATTGTAGTTTAAAGTATTGATTGCTTGGTTCATTTGTTTGTATGATCTTATGTGATTGTTTGCTTGACTCGCCTGTTCGAGGTAAGAAGTCAAATTTGGGTAACAGAAGTGGAGAAAGAGTGATTCAATTAATGGAGATAATTTGAACCATTGAAGAGGTTGAATAGGCAGCTTTAAAATAAGTATCGATATGACTGGCTAGTGCAGAGCTCAGAGTTGAATCCTGTTGCCGTTAATCGAGGCCTGTCATAAATTGTGTGAGGGGCTGCCGTATGTTTGTTTCAGAATTATGTACAGTAGGCTTAGTGTGTCACTATTTATCAAGACAAACTTTCTATTGTACAgtttttttaaacatgtttttttctgttCTGACTTACCACTGTGTCTTTGAGAATGTTGAACCAGGTAGACTCATTTTATCATTCAGGAAAACAGACTGATCAAATTCGCCCACAAAACTTGTCTATAATATTAGTCTCTATGGTGCACTGCCGCTAGATTTTTGACAAAACCCCTAAACATATTCAACATTTCAAAGACACTTTATGTCCTCAATGAATCAGTCCATCATGAAACATACATGCATGGATGAAAGTGAAGCTGTATTTTAGCTATTGTTTTTTAAGGACTGATTGTTTTCATACAATATTGCATGTGTACATATGCCCTTTTTCTCGGTTTGTAATATCTGTGTCCCACATAAATTGCGATTGTGTCAATGTT

Function

symbol description
cd34 Enables carbohydrate binding activity. Involved in several processes, including blood vessel development; regulation of cellular response to stress; and regulation of cytokine production. Located in external side of plasma membrane; intercellular bridge; and perinuclear region of cytoplasm.

NR:

description
hematopoietic progenitor cell antigen CD34 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609701.2 False 2234 mRNA 0.45 8 53380501 53400793
XM_021609702.2 True 2231 mRNA 0.45 8 53380501 53400793

Neighbor

gene id symbol gene type direction distance location
LOC118965299 NA coding downstream 7072 53368443 ~ 53373429 (-)
pad LOC106583007 coding downstream 274637 53090437 ~ 53105864 (-)
LOC110527983 LOC106583010 coding downstream 538732 52785667 ~ 52841769 (-)
LOC118965418 NA coding downstream 686025 52694402 ~ 52694476 (-)
LOC118965422 NA coding downstream 686482 52693944 ~ 52694019 (-)
LOC110527988 plxna2 coding upstream 29154 53429947 ~ 53486228 (-)
LOC118965356 NA coding upstream 126055 53526848 ~ 53530100 (-)
kif17 kif17 coding upstream 189045 53589838 ~ 53602153 (-)
LOC110527994 LOC106582994 coding upstream 212774 53613567 ~ 53623906 (-)
LOC110527991 LOC106582993 coding upstream 223471 53624264 ~ 53636278 (-)
G622987 NA non-coding downstream 54511 53303844 ~ 53325990 (-)
G622991 NA non-coding downstream 60795 53317862 ~ 53319706 (-)
G622874 LOC105006631 non-coding downstream 136659 53150477 ~ 53243842 (-)
G622534 NA non-coding downstream 234717 53145416 ~ 53145784 (-)
G623013 NA non-coding upstream 5237 53406030 ~ 53411743 (-)
G623018 LOC106581772 non-coding upstream 12137 53412930 ~ 53413188 (-)
G623173 NA non-coding upstream 334255 53735048 ~ 53737808 (-)
G623176 NA non-coding upstream 340561 53741354 ~ 53748563 (-)
G622985 NA other downstream 57670 53305536 ~ 53322831 (-)
G619733 NA other downstream 2421961 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 3074345 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 3444220 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 4083253 49295040 ~ 49297305 (-)
G625426 NA other upstream 1671686 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 1763699 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 2032663 55420466 ~ 55566988 (-)
G627254 NA other upstream 3290530 56691323 ~ 56696091 (-)
G627314 NA other upstream 3433792 56834350 ~ 56835092 (-)

Expression


Co-expression Network