LOC118965356


Basic Information

Item Value
gene id LOC118965356
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53526848 ~ 53530100 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118965356
ATGAGGCTGGGAAGACAGGACTTAAGCCTGGACAAAGCTGCAGGGGCGATGGTCACCGCCTGGAACACACTGAGCATACAAGTGATGAAAGTGGACAGGGCCCGGGCGATGCAAGACCCTGGCGAGCTTCCTGCAGCCATAGCCTTGTCCCTGGGCTCCTGGAACAACTCGGGCCTCATGCAGCACAGCATTAATTTGTTCGCTTCCCTTCTATGCAGTCCACGCAGGTGAACGGGGCTGTCCAGGTGGGGAGGGACGTGGTGCCCATGGCCCTGATGGCCAGTCTGGTTATCCTTGTGTTTCTGTACTGCCACAGCCAGCAGGTGAAGGGACTCTGCAGCAGATTTGGGGCCAGTGGTGGGGCAGAGCAGCGGACAGCTAAGGCTGTAGTGGCCTTGGTGACCCTGTACATGTTCCTCTATGGGGTGGATAATGGACTGTGCACATATTATTCTTGTCGCTGTATGCAGAACTCAGCCCCCTGCTGATCATAACCACCAACAGGAAGATGAACAGCAGGCTGAGGTGTGTGGTGCAGGAGAGGCCTGTTCAGGACAGCGCCACTACACTATCTACTGTGTGAGTGAGGGACATTATTGTGGTCAGATATGGTTACAAAGATGAGGAATGTTGATTATTAATGAATTATGTTGCTATTAGAATATGGATCATAAAACATATAGAGCTAACATTGTACAATGTGAAATGTGTGGCAAAAGTATCTTGAACTCATGTACTCTAGTTTTTAAATTAGATTTTTATCCTGGTTAATATTTTTCAGCATATAACATTATTGTTTGAGCTGTTTTGACTTATGTCCCAAAGTTGATGGCATGCTTGGAATTACAGAACTGGAAGGTCATGAAACCAATATGTTGCTAGAAATGAACGTGCgtagaaaataaaaaaagatgcATCGAAGCGGAGTTTGAGCCTTTTTTGTCACACGATCCAATTAGTGAAATTACCAGGATAT

Function

NR:

description
vomeronasal type-1 receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118965356 True 976 mRNA 0.47 2 53526848 53530100

Neighbor

gene id symbol gene type direction distance location
LOC110527988 plxna2 coding downstream 40620 53429947 ~ 53486228 (-)
LOC101268938 cd34 coding downstream 126055 53380501 ~ 53400793 (-)
LOC118965299 NA coding downstream 153419 53368443 ~ 53373429 (-)
pad LOC106583007 coding downstream 420984 53090437 ~ 53105864 (-)
LOC110527983 LOC106583010 coding downstream 685079 52785667 ~ 52841769 (-)
kif17 kif17 coding upstream 59738 53589838 ~ 53602153 (-)
LOC110527994 LOC106582994 coding upstream 83467 53613567 ~ 53623906 (-)
LOC110527991 LOC106582993 coding upstream 94164 53624264 ~ 53636278 (-)
LOC110527996 NA coding upstream 106683 53636783 ~ 53703957 (-)
LOC110527997 LOC106582992 coding upstream 174624 53704724 ~ 53732788 (-)
G623018 LOC106581772 non-coding downstream 113660 53412930 ~ 53413188 (-)
G623013 NA non-coding downstream 115105 53406030 ~ 53411743 (-)
G622987 NA non-coding downstream 200858 53303844 ~ 53325990 (-)
G623173 NA non-coding upstream 204948 53735048 ~ 53737808 (-)
G623176 NA non-coding upstream 211254 53741354 ~ 53748563 (-)
G623177 NA non-coding upstream 220809 53750909 ~ 53751186 (-)
G623178 NA non-coding upstream 221571 53751671 ~ 53751956 (-)
G622985 NA other downstream 204017 53305536 ~ 53322831 (-)
G619733 NA other downstream 2568308 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 3220692 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 3590567 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 4229600 49295040 ~ 49297305 (-)
G625426 NA other upstream 1542379 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 1634392 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 1903356 55420466 ~ 55566988 (-)
G627254 NA other upstream 3161223 56691323 ~ 56696091 (-)
G627314 NA other upstream 3304485 56834350 ~ 56835092 (-)

Expression


Co-expression Network