Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110527990 |
| gene name | LOC106583000 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 53530233 ~ 53546191 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| putative homeodomain transcription factor 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021609709.2 | False | 3644 | mRNA | 0.47 | 18 | 53530233 | 53546191 |
| XM_021609710.2 | True | 3647 | mRNA | 0.47 | 18 | 53530233 | 53546191 |
53,530,000
53,532,000
53,534,000
53,536,000
53,538,000
53,540,000
53,542,000
53,544,000
53,546,000
53,548,000
53,550,000
53,552,000
53,554,000
53,556,000
53,558,000
53,560,000
53,562,000
53,564,000
NC_048571.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110527987 | NA | coding | upstream | 195719 | 53305471 ~ 53334514 (+) |
| LOC118965298 | NA | coding | upstream | 207422 | 53321171 ~ 53322811 (+) |
| LOC110527986 | LOC106565872 | coding | upstream | 235549 | 53150043 ~ 53294684 (+) |
| lrig2 | LOC106583004 | coding | upstream | 393268 | 53127421 ~ 53136965 (+) |
| LOC110527984 | LOC106583006 | coding | upstream | 439179 | 52922877 ~ 53091054 (+) |
| LOC110527992 | pfkfb2 | coding | downstream | 6117 | 53552308 ~ 53563191 (+) |
| LOC110527995 | yod1 | coding | downstream | 23318 | 53569509 ~ 53574407 (+) |
| LOC110527993 | cssa22h1orf116 | coding | downstream | 35744 | 53581935 ~ 53637160 (+) |
| LOC110527998 | ppb | coding | downstream | 185764 | 53731955 ~ 53750439 (+) |
| LOC110527122 | LOC106582938 | coding | downstream | 255127 | 53801318 ~ 53815919 (+) |
| G622706 | NA | non-coding | upstream | 2832 | 53524367 ~ 53527401 (+) |
| G622669 | NA | non-coding | upstream | 115435 | 53414510 ~ 53414798 (+) |
| G622662 | NA | non-coding | upstream | 118486 | 53405834 ~ 53411747 (+) |
| G622641 | NA | non-coding | upstream | 126287 | 53357391 ~ 53403946 (+) |
| G622538 | NA | non-coding | upstream | 381718 | 53148309 ~ 53148515 (+) |
| G622799 | NA | non-coding | downstream | 78250 | 53624441 ~ 53625752 (+) |
| G622831 | NA | non-coding | downstream | 134882 | 53681073 ~ 53743473 (+) |
| G623183 | NA | non-coding | downstream | 209584 | 53755775 ~ 53756172 (+) |
| G623191 | NA | non-coding | downstream | 215331 | 53761522 ~ 53761727 (+) |
| G621695 | LOC106582949 | other | upstream | 1036993 | 52491168 ~ 52493240 (+) |
| G621650 | NA | other | upstream | 1138600 | 52391348 ~ 52391633 (+) |
| LOC110527970 | LOC106583026 | other | upstream | 2456226 | 50960494 ~ 51079129 (+) |
| G618712 | LOC106583033 | other | upstream | 3226001 | 50303430 ~ 50304232 (+) |
| tafa4b | LOC106583040 | other | upstream | 3910065 | 49571790 ~ 49620194 (+) |
| G623180 | NA | other | downstream | 207715 | 53753906 ~ 53754119 (+) |
| G624628 | NA | other | downstream | 1277446 | 54823637 ~ 54824199 (+) |
| G624962 | LOC106582975 | other | downstream | 1501105 | 55047296 ~ 55052688 (+) |
| LOC110528007 | LOC106582974 | other | downstream | 1524441 | 55053185 ~ 55074095 (+) |
| LOC110527126 | LOC106582962 | other | downstream | 1661470 | 55207615 ~ 55208708 (+) |
