LOC110527993 (cssa22h1orf116)


Basic Information

Item Value
gene id LOC110527993
gene name cssa22h1orf116
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53581935 ~ 53637160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609723.2
AGACGGAACAGGCAACAGGTCAGATGGACTAGACCTGCGCGATTAACGGAATGTGGTGTTACTAGCACAAGCCTGTAAAATTACAGGGAAAGAACGGTTCTCCACTACCAACTTCTTTTATTACCTTGGACTTGAGAAACCTTCATCTTTACAATGCCAAAGAGTGACACATGGCCCGGTGGCGTCACCATAGGGACGATCACTGGCATGGACAGTGTGGGCAGCTGTGACAGTGTTTTCAGTATGAACTCTGGATTTAGTGACAATAGCCTCAAGCACCTGTCTGCTGAGGAGAGGGCATGTCTCATGTTCTTGGAGGAGACCATAGAGTCCCTAGAGACTGAGGAGGACAATGGACTGTCCAATGATGAGCCTGACTGCCTGCCCACCACCGGCAACGTGGCCACCAAGATGGCCCACCTCTCTGCCTCCATGGGCCAAAACAAGCTCAACAATGTATCAAAATATCCCAGTGATGAGTACGGTTACCTTGTTCCTACTCCGTTCATCCTGGCCAACAGCACCTCCTGCATCCTGTCCAAGCCCAGGCCAGGAATACCCCCAAATAATGAGAACTCTCACCCAAAGCCCCAGGTCATTGCCTTGGACAACACGCCATCTCAGAGCCATCCCCCTTGTGTACCCCCTGAGGTCAATGTTGTGGTGATACCCCCTCCATCAAAGCCCAAAGACTACCCTTGTCAGAGACCACCCCCTTCACCCAGGGGCCCTCTGTCCTATGAGGCCCTAGTGCAGCTGAGGAAGAGTGCGTCCATGAAGAGAACCCTTCAAAGTGCCACAGCTGAGACCAGAGACTGGAACAGGCAGCCCTCTTCATCAGCCGTTCCCATTGACCTGCACCATGGGAGCACACCCAGAGACCCGTCAGTCACCCCAGCCCAGGTCACACTCCCCCAAGAGCCCAGCAAGCAGAATGATAGTCCTCCAGTAGTGTTCCcaaaaccccccaaaataccCTCCCACATTGCCCTGAATACCCAAAAGGTTACAGCCAACCCCACCACAGACTCCAGTGCCCCTTCCTTGAGCTCATCACCCACTGACAGGCATTTGTCGGACTCCCAAAAGGTGAGAAAGGAGGCCCTGCAGAAGCTGGGGCTCCTGAGAGACAATAATGAGTCCCAACCTAAGTCTGTTACGCCACTGTGCTCCTCCAAATTTCACTCCACCTGTGACCCAACTTCAGCCAGTGTTGGAGTTAAAGCTCAACCCCACGGTAACTCAACAAGAAGCCAGCCCTCATCCACCTCCCAAGGACCCAGAGAACCTAGCAGCAGGCCGGTACAAAGCAGCAGCTTCCTCCATCGCTCTAGGAGTGAGGAGCAGCCCCCCATACCACCCTCACACCTGACCAAACCCAGTGGGGTCAAAGCTGTCACCCTAGAGCGTTCTGAGGTGGGGCTTGGGACCTACGTGGCCGACCACCGGAAACCTCCCCAGGGTGGACGTTGCACCCCACCTGCTCCCCCCAAAGCCCCAGAGCAGGAGAAAACAACCCTCACTGCCCAGCCAGTGTCCACCCACAAGACCCCGCACTGCCCGGGCTTCAGTGTGGTGATGGTGCCCAGCATGGGAGAAGACAGACGAGAGGCTCTTAGGAAGCTGGGGCTGCTGAAAGACTAGGCCCGGAGAGAAGGTATCTCTTCCCAGTGGTTAAATGGATATATAAAAGGGGTATCAAATGGAACAGACTTCCACCACCGTAGGCAGAGAAGCAGCATAAAGAGGGAATTGAATGGATTTCTGTACATATTTTTTAGCACTGAATGTGCTGGTTTATCAGGAAAATACCTTCTTTCTTCCTTTTCTGTCTGTAAAACCTCTTACTGCAGTTTAGTTTTCATGTCAGTTGTTTGTTAACATGATATTTGCAAATTGTTTTTAAAGGATTTTGCTGTTACAGAATCAGTCACTGCACACTCATACAGTAGATCAGAGAAATGAATGCAACAGGCTTATtcagagaggttgggttaaatgcggaagacacatttcagttgaatgcattcagttgtacaactgactgggtatccccctttcctatTCATCATATTTTTGGTATAATTGCTGTGCAACAGACTGCGTTCATGGTATGCTTGAGATGAGAACATGTATTTGACCATACATATTTTGTCTTCTCTAATGCATATTTGTTTTTGGTCCATATCTCTAAAGGCCATACATGCAATTGTGTTAGGGCCCATTGTACCTTTGAGAGGACATTCTGGGCTTTTCAATGATATCACTTGTGGGGGTGTGACTTGATTTTTTTTCTGCCTGGTTCTTCAAAAATGGCAACCATCACAATTAGCACATTTTATAGTAAGGGTAGCATTTTTGTGATTTTGATATTCAAATAGTTTCTAATAGGTAAATATAATTTCTTCACATTAAATAAGATATTGTTAATAAAGTGGACATCAAGATGCGCTGTTTTTCACGTTCTGTCCCCATTTACTGTAATTGACTATAAACAGAGTCCCAAAGAAACATTTATTCACCCAAAACACCTTTCCACCTGCCTTACCTTTCTCCCCCTCGATGCACCCTCCTCTCTTACAGACTACTCATTTTACACATGCCACTTTCGCAATGAGAAAGCCTACTCAGCTATCTGTGTGTTATCAGATTATCTTGGACTGCACCTCTATGAACTTGTCCTACTGAACAGACCGACCAGTGCTTTCTTTTCTGTGCTGGTCATTCTTGATGTCCAAAGAACTCTTTCTTTTCATTTAACGGTATAAGAGAAAGGTCAGTGTCTTATATATTGTTGGAATGCTCTCTGGTAATTGTCATATCATCAGTAGTACCACTGCAGTTCTCTCTCAGTGAGGTATTATTATAGTGGAGCCGTATCCATGTCTGAGCTGAGTACTTTGCATACGATGGTGTCACGTCTCGCAACTGAAAGAACCGCGGTCAGTCAAGTCGTATTGAACAATAGATGAAAAAAATCTAGCCATTGCCTAAGTGGGAAACACGATACGGAGATTCATCGATATTCAGATGAAAGGGACACACAACCCTGAATGATTTTCCATTGTGATGGTAATGTACGTGGTTAGGGACATTAACTTAAATGTCATATTCAGAATTGTCAGAGGTACTGGAATTTGTCTTTTTCTGGAatgctaaataaaaaaaattgccgAGGAAGCCGGGCTCAGATTGCTTGTAAAAACCAATTCAAGTTG
>TU708352
AAAGAACTCTTTCTTTTCATTTAACGGTATAAGAGAAAGGTCTTAAGTATTACAAGCACTTCATGTTTAGCAACCTTGGCATTTTCTTTTTAATCTTGCATTTTATCcattgttcattgttgtttattcACGTTcatttaaatgttattttgtgGACTGATTTGCATTGCTTCTTGaatgcatatctcttcctcttgGGAGGTTTATGTACATATCACAGAGTGCACTCCCTGTGGTTATTTACTGATAACCTTTGACCTCTGATGTCTTACAATGTCAATTGTCTCTGTGCATCCACCCTTTCTCTGCCTTCCCCTTCATCCCAAAATAACTTTTTACCCTGTTTTCAACCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609723.2 False 3218 mRNA 0.47 4 53581935 53589470
TU708352 True 355 lncRNA 0.35 2 53588989 53637160
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Neighbor

gene id symbol gene type direction distance location
LOC110527995 yod1 coding upstream 7528 53569509 ~ 53574407 (+)
LOC110527992 pfkfb2 coding upstream 18744 53552308 ~ 53563191 (+)
LOC110527990 LOC106583000 coding upstream 35744 53530233 ~ 53546191 (+)
LOC110527987 NA coding upstream 247421 53305471 ~ 53334514 (+)
LOC118965298 NA coding upstream 259124 53321171 ~ 53322811 (+)
LOC110527998 ppb coding downstream 142485 53731955 ~ 53750439 (+)
LOC110527122 LOC106582938 coding downstream 211848 53801318 ~ 53815919 (+)
LOC110528000 LOC106582986 coding downstream 300905 53890375 ~ 54051092 (+)
lrrc38b LOC106582984 coding downstream 487056 54076526 ~ 54100144 (+)
aadacl4 LOC106582981 coding downstream 593752 54183222 ~ 54190652 (+)
G622706 NA non-coding upstream 54534 53524367 ~ 53527401 (+)
G622669 NA non-coding upstream 167137 53414510 ~ 53414798 (+)
G622662 NA non-coding upstream 170188 53405834 ~ 53411747 (+)
G622641 NA non-coding upstream 177989 53357391 ~ 53403946 (+)
G622538 NA non-coding upstream 433420 53148309 ~ 53148515 (+)
G622799 NA non-coding downstream 34971 53624441 ~ 53625752 (+)
G622831 NA non-coding downstream 91603 53681073 ~ 53743473 (+)
G623183 NA non-coding downstream 166305 53755775 ~ 53756172 (+)
G623191 NA non-coding downstream 172052 53761522 ~ 53761727 (+)
G623196 NA non-coding downstream 174617 53764087 ~ 53764369 (+)
G621695 LOC106582949 other upstream 1088695 52491168 ~ 52493240 (+)
G621650 NA other upstream 1190302 52391348 ~ 52391633 (+)
LOC110527970 LOC106583026 other upstream 2507928 50960494 ~ 51079129 (+)
G618712 LOC106583033 other upstream 3277703 50303430 ~ 50304232 (+)
tafa4b LOC106583040 other upstream 3961767 49571790 ~ 49620194 (+)
G623180 NA other downstream 164436 53753906 ~ 53754119 (+)
G624628 NA other downstream 1234167 54823637 ~ 54824199 (+)
G624962 LOC106582975 other downstream 1457826 55047296 ~ 55052688 (+)
LOC110528007 LOC106582974 other downstream 1481162 55053185 ~ 55074095 (+)
LOC110527126 LOC106582962 other downstream 1618191 55207615 ~ 55208708 (+)
G623197 NA non-coding downstream 127263 53764423 ~ 53765244 (+)

Expression

LOC110527993(cssa22h1orf116) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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LOC110527993(cssa22h1orf116) Expression in each Bioproject

Bar chart with 20 bars.
LOC110527993(cssa22h1orf116) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network