LOC110527994 (LOC106582994)


Basic Information

Item Value
gene id LOC110527994
gene name LOC106582994
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53613567 ~ 53623906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609727.2
ACACCTATGTTGCGCAATGAGTGTATGGACCATCAATATGGGCTGCAGAAATGCCTTTTAAGTATGGCCTGATTTATATCGGCGCATCGTGCGTTTAAACGGTTTTTTTTTCATCTCAAATATGTCTCGAAAGGTAAAACGTTTCTAGTCCCGCCCAAACACACCGGTGAATAGCCAACTCTGAATTGAGTCGGGGCGGGCGTCAATTTGACGATGAGGTAActgactgggagaggaattcagaGTTTGGAACAGTGGAACGGGGTCCGGAGTACAAGAGTGCGGAAGTGAAAAGAGCGTTGTTGTGGCCCTAAAAACTCAGGGGAACTCCTCCAGAAACAGCAGCATAAAGAAGTAGGCTAACTCAGGAGTGAAAATGATGGGTGAGATACCGGTCAGGGAGGATGGCACAGTTACAAGGTCAGCTGAGACATGCAAGAAAAGGAGGCCTGTGTCCCTTAAATTTTCCATCAAAGGGGTGAAGATGTATGATGAAGATGAGACGACCCTCCTCATGGCCCATGCTCTACGAAGGGTCTCCCTTTCCACTGCCCGCCCCTCGGACGCCCAGTTTGCCTTTGTTTCCCACAACCCCGGCAGCCCTGATGCCCAGCTATACTGCCACCTTTTCAAGGCTAGGCATGCCAGAGCAGCCCAGTTCCTGAACCTGTTGCTGTGCCGCTGTTTCCAGCTGTCCTACCTGGCAAAGCACCCAGAGGAGGCGCAGGATGAGTCTGTCGGCCCACTGCCCAGCCGTGCCCCCTCCCTCCTCAACCAGGGCTTCCCTCTCTGTGTCAGTGCCCTTGTGTCATTCCGAAGGGCCCCCACTCAGGGCTTACTCCCAGGGGAAAAGGTCTTCCCATTGAAGAACAACGGAACAACAACTGAGGAACAACCGAGCAGCCAAGAGGAGGTCTTCAACTCCTCTCCTTCCCTGGTGCGCAAGAGAGCCATCCGCAACAAAGTACTGCGCTCAGGAGCCTATCGCTCCTTCACTTACAGCCCTCACAAACAACGTCACCTTCAGGATCAGCTAAACTCTCCAGAAGggaaggggcAGGACAAAATGCCAGTGAGGAGAGCCCGGGCCCCGAGCCTTGCTGAAACAGAAGAAGCTCTGGCTCAAGCAGTGTGGTGTTGGGCTGGCATTGCCACTGACAGCAGCTCCTCCCTGCTTGCAGAGGATGTCCTGGGGTCGTACCTGCTGTGCCCCCATCCTAAGAGAACTGGCTGTGGCTCTCTCATAATTCGTTTCTCTTCTGGACTGGTCACCCACCTAATAAACAACACCTCCAACGGGAAATACCTGCTTGAGAACTGCCACATAGAATTTAGCACCATTGCTGCCTTGATAGAGCACTGCACCGATATCAAGGGGGAGCTGGACTGTCCGCTGAGTTGTGCCCGTGTGAACCACTGCTATGAGTGGGAGGAGAACGTTGCTAAGGCACTGCCTTTAGCCTTACACCAAGGCCTCAAAAGAAAGAATGCAAAATACACCCAGAGGAAACAATGGGTTTAAAAGTAATTTCTGATCATTGGATTGATCGATGTATCTCATTTTCTAAAAGACACTGACCATATGTTACACTGACACCTTAAATATATAATTCATTAACTTGCATGCTTCACTTTTGTTATTGTTTTCAGATTTCTGATAGAAACACAACTCTAACTATCAAATTTACTTCCAGCAGGTGAATTGTGATGAGTAGAGTAACATTTTGACACTTAGCCTCTGGGATGTAGGGTTGTTTTAATGTCAAAAAGCTGTGTGTTTGAGTATATTCTTCTATGTTTTAGCTGCACCTACCTTACTTCACCTACGTTTCAATTaaattattttaatacattttaattacattattttaaaACGTAGGaatattatgtgtgtgtttgtatagacTATATAGGGACATTTTTTTATAGATTAAGCAGACTAAGGTTTTTTTGTACATTAACTCTGACTCATGTTAAGCTGTCTTTTTGAATTTGTGTTTTTCACTGCTGTCTTTTAAAGTGTTCTGTGAGAACTAGCAGTATTTCTTCATTTTGATTACAGATAAATGTACTTCCTGAATTAAAGGgtattgttgtgttttatatttgtaAGCATAATGCATTGCCATATTGTATACTGTataccaggtattcccaaactggggtacgccaaataaaaatgtgattcacatatttttaaaatatatatatatatatatatatcttcaaattttc
>XM_036983529.1
CACCTATGTTGCGCAATGAGTGTATGGACCATCAATATGGGCTGCAGAAATGCCTTTTAAGTATGGCCTGATTTATATCGGCGCATCGTGCGTTTAAACGGTTTTTTTTTCATCTCAAATATGTCTCGAAAGGTAAAACGTTTCTAGTCCCGCCCAAACACACCGGTGAATAGCCAACTCTGAATTGAGTCGGGGCGGGCGTCAATTTGACGATGAGGTAActgactgggagaggaattcagaGTTTGGAACAGTGGAACGGGGTCCGGAGTACAAGAGTGCGGAAGTGAAAAGAGCGTTGTTGTGGCCCTAAAGATCCAGCTGCGACATCATCTCTCAGAGCAGTCATCCCTCAGGGTCTCTATGCTGCCATCTACTGATATGTCATCTCTCAGTGCAGTGTGTCGCTCAGGAAAAGTGGAGGTGTCGAAAGGAACCATATAAGGAGAAGTGGGGATTTTGAAAGGAACCATATAAGGAGAAGTGGGGATTTTGAAAGGAACCATATAAGGAGAAGTGGGGATTTTGAAAGGAACCATATAAAGAGAAGTGGGGATTTTGAAAGGAACCATATAAGGAGAAGTGGGGATTTTGAAAGGAACCATATAAGGAGAAGTGGGGATTTTGAAAGGAACCATATAAGGAGAAGTGGGGATTTTGAAAGGAACCATATAAGGAGAAGTGGGAATTTTGAAAGGAATAGTGAATAGACATTTTTGGGGATAACTAACATTCCTAACTGTCATCTCTGCAGAACATGACTGACATCTTGAGTGGCACCTTTCAAAACCCACACTTCTCCTTATATGGTTCCTTTCAAAATGTCCACTCCTTTCGAAACCCCCACTTTTCCTGAGAGATGACATTGTAGACCCTGAGGGATGACTGCTCTGAGAGATGACATTGTAGACCCTGAGGGATGACTGCTCTGAGAGATGACATTGTAGACCCTGAGGGATGACTGCTCTGAGAGATGATGTTGCAGCAGGACCCCTGCAACTTTccagtcctgctaagcattcaaaatAACTCAGGGGAACTCCTCCAGAAACAGCAGCATAAAGAAGTAGGCTAACTCAGGAGTGAAAATGATGGGTGAGATACCGGTCAGGGAGGATGGCACAGTTACAAGGTCAGCTGAGTATGTTGGGTCTTTTCATGTGGACGACTGCTGTTTGGACGATCAGATGCAGCAGTTGCACACACAGCTAAAGTCTCTCAAAACATGCAAGAAAAGGAGGCCTGTGTCCCTTAAATTTTCCATCAAAGGGGTGAAGATGTATGATGAAGATGAGACGACCCTCCTCATGGCCCATGCTCTACGAAGGGTCTCCCTTTCCACTGCCCGCCCCTCGGACGCCCAGTTTGCCTTTGTTTCCCACAACCCCGGCAGCCCTGATGCCCAGCTATACTGCCACCTTTTCAAGGCTAGGCATGCCAGAGCAGCCCAGTTCCTGAACCTGTTGCTGTGCCGCTGTTTCCAGCTGTCCTACCTGGCAAAGCACCCAGAGGAGGCGCAGGATGAGTCTGTCGGCCCACTGCCCAGCCGTGCCCCCTCCCTCCTCAACCAGGGCTTCCCTCTCTGTGTCAGTGCCCTTGTGTCATTCCGAAGGGCCCCCACTCAGGGCTTACTCCCAGGGGAAAAGGTCTTCCCATTGAAGAACAACGGAACAACAACTGAGGAACAACCGAGCAGCCAAGAGGAGGTCTTCAACTCCTCTCCTTCCCTGGTGCGCAAGAGAGCCATCCGCAACAAAGTACTGCGCTCAGGAGCCTATCGCTCCTTCACTTACAGCCCTCACAAACAACGTCACCTTCAGGATCAGCTAAACTCTCCAGAAGggaaggggcAGGACAAAATGCCAGTGAGGAGAGCCCGGGCCCCGAGCCTTGCTGAAACAGAAGAAGCTCTGGCTCAAGCAGTGTGGTGTTGGGCTGGCATTGCCACTGACAGCAGCTCCTCCCTGCTTGCAGAGGATGTCCTGGGGTCGTACCTGCTGTGCCCCCATCCTAAGAGAACTGGCTGTGGCTCTCTCATAATTCGTTTCTCTTCTGGACTGGTCACCCACCTAATAAACAACACCTCCAACGGGAAATACCTGCTTGAGAACTGCCACATAGAATTTAGCACCATTGCTGCCTTGATAGAGCACTGCACCGATATCAAGGGGGAGCTGGACTGTCCGCTGAGTTGTGCCCGTGTGAACCACTGCTATGAGTGGGAGGAGAACGTTGCTAAGGCACTGCCTTTAGCCTTACACCAAGGCCTCAAAAGAAAGAATGCAAAATACACCCAGAGGAAACAATGGGTTTAAAAGTAATTTCTGATCATTGGATTGATCGATGTATCTCATTTTCTAAAAGACACTGACCATATGTTACACTGACACCTTAAATATATAATTCATTAACTTGCATGCTTCACTTTTGTTATTGTTTTCAGATTTCTGATAGAAACACAACTCTAACTATCAAATTTACTTCCAGCAGGTGAATTGTGATGAGTAGAGTAACATTTTGACACTTAGCCTCTGGGATGTAGGGTTGTTTTAATGTCAAAAAGCTGTGTGTTTGAGTATATTCTTCTATGTTTTAGCTGCACCTACCTTACTTCACCTACGTTTCAATTaaattattttaatacattttaattacattattttaaaACGTAGGaatattatgtgtgtgtttgtatagacTATATAGGGACATTTTTTTATAGATTAAGCAGACTAAGGTTTTTTTGTACATTAACTCTGACTCATGTTAAGCTGTCTTTTTGAATTTGTGTTTTTCACTGCTGTCTTTTAAAGTGTTCTGTGAGAACTAGCAGTATTTCTTCATTTTGATTACAGATAAATGTACTTCCTGAATTAAAGGgtattgttgtgttttatatttgtaAGCATAATGCATTGCCATATTGTATACTGTataccaggtattcccaaactggggtacgccaaataaaaatgtgattcacatatttttaaaatatatatatatatatatatatcttcaaattt
>XM_036983530.1
ACACCTATGTTGCGCAATGAGTGTATGGACCATCAATATGGGCTGCAGAAATGCCTTTTAAGTATGGCCTGATTTATATCGGCGCATCGTGCGTTTAAACGGTTTTTTTTTCATCTCAAATATGTCTCGAAAGGTAAAACGTTTCTAGTCCCGCCCAAACACACCGGTGAATAGCCAACTCTGAATTGAGTCGGGGCGGGCGTCAATTTGACGATGAGGTAActgactgggagaggaattcagaGTTTGGAACAGTGGAACGGGGTCCGGAGTACAAGAGTGCGGAAGTGAAAAGAGCGTTGTTGTGGCCCTAAACTCTCTGCTATATTCTGATTCTGCAGAACTCAGGGGAACTCCTCCAGAAACAGCAGCATAAAGAAGTAGGCTAACTCAGGAGTGAAAATGATGGGTGAGATACCGGTCAGGGAGGATGGCACAGTTACAAGGTCAGCTGAGTATGTTGGGTCTTTTCATGTGGACGACTGCTGTTTGGACGATCAGATGCAGCAGTTGCACACACAGCTAAAGTCTCTCAAAACATGCAAGAAAAGGAGGCCTGTGTCCCTTAAATTTTCCATCAAAGGGGTGAAGATGTATGATGAAGATGAGACGACCCTCCTCATGGCCCATGCTCTACGAAGGGTCTCCCTTTCCACTGCCCGCCCCTCGGACGCCCAGTTTGCCTTTGTTTCCCACAACCCCGGCAGCCCTGATGCCCAGCTATACTGCCACCTTTTCAAGGCTAGGCATGCCAGAGCAGCCCAGTTCCTGAACCTGTTGCTGTGCCGCTGTTTCCAGCTGTCCTACCTGGCAAAGCACCCAGAGGAGGCGCAGGATGAGTCTGTCGGCCCACTGCCCAGCCGTGCCCCCTCCCTCCTCAACCAGGGCTTCCCTCTCTGTGTCAGTGCCCTTGTGTCATTCCGAAGGGCCCCCACTCAGGGCTTACTCCCAGGGGAAAAGGTCTTCCCATTGAAGAACAACGGAACAACAACTGAGGAACAACCGAGCAGCCAAGAGGAGGTCTTCAACTCCTCTCCTTCCCTGGTGCGCAAGAGAGCCATCCGCAACAAAGTACTGCGCTCAGGAGCCTATCGCTCCTTCACTTACAGCCCTCACAAACAACGTCACCTTCAGGATCAGCTAAACTCTCCAGAAGggaaggggcAGGACAAAATGCCAGTGAGGAGAGCCCGGGCCCCGAGCCTTGCTGAAACAGAAGAAGCTCTGGCTCAAGCAGTGTGGTGTTGGGCTGGCATTGCCACTGACAGCAGCTCCTCCCTGCTTGCAGAGGATGTCCTGGGGTCGTACCTGCTGTGCCCCCATCCTAAGAGAACTGGCTGTGGCTCTCTCATAATTCGTTTCTCTTCTGGACTGGTCACCCACCTAATAAACAACACCTCCAACGGGAAATACCTGCTTGAGAACTGCCACATAGAATTTAGCACCATTGCTGCCTTGATAGAGCACTGCACCGATATCAAGGGGGAGCTGGACTGTCCGCTGAGTTGTGCCCGTGTGAACCACTGCTATGAGTGGGAGGAGAACGTTGCTAAGGCACTGCCTTTAGCCTTACACCAAGGCCTCAAAAGAAAGAATGCAAAATACACCCAGAGGAAACAATGGGTTTAAAAGTAATTTCTGATCATTGGATTGATCGATGTATCTCATTTTCTAAAAGACACTGACCATATGTTACACTGACACCTTAAATATATAATTCATTAACTTGCATGCTTCACTTTTGTTATTGTTTTCAGATTTCTGATAGAAACACAACTCTAACTATCAAATTTACTTCCAGCAGGTGAATTGTGATGAGTAGAGTAACATTTTGACACTTAGCCTCTGGGATGTAGGGTTGTTTTAATGTCAAAAAGCTGTGTGTTTGAGTATATTCTTCTATGTTTTAGCTGCACCTACCTTACTTCACCTACGTTTCAATTaaattattttaatacattttaattacattattttaaaACGTAGGaatattatgtgtgtgtttgtatagacTATATAGGGACATTTTTTTATAGATTAAGCAGACTAAGGTTTTTTTGTACATTAACTCTGACTCATGTTAAGCTGTCTTTTTGAATTTGTGTTTTTCACTGCTGTCTTTTAAAGTGTTCTGTGAGAACTAGCAGTATTTCTTCATTTTGATTACAGATAAATGTACTTCCTGAATTAAAGGgtattgttgtgttttatatttgtaAGCATAATGCATTGCCATATTGTATACTGTataccaggtattcccaaactggggtacgccaaataaaaatgtgattcacatatttttaaaatatatatatatatatatatatcttcaaattt
>XM_021609724.2
ACCTATGTTGCGCAATGAGTGTATGGACCATCAATATGGGCTGCAGAAATGCCTTTTAAGTATGGCCTGATTTATATCGGCGCATCGTGCGTTTAAACGGTTTTTTTTTCATCTCAAATATGTCTCGAAAGGTAAAACGTTTCTAGTCCCGCCCAAACACACCGGTGAATAGCCAACTCTGAATTGAGTCGGGGCGGGCGTCAATTTGACGATGAGGTAActgactgggagaggaattcagaGTTTGGAACAGTGGAACGGGGTCCGGAGTACAAGAGTGCGGAAGTGAAAAGAGCGTTGTTGTGGCCCTAAAAACTCAGGGGAACTCCTCCAGAAACAGCAGCATAAAGAAGTAGGCTAACTCAGGAGTGAAAATGATGGGTGAGATACCGGTCAGGGAGGATGGCACAGTTACAAGGTCAGCTGAGTATGTTGGGTCTTTTCATGTGGACGACTGCTGTTTGGACGATCAGATGCAGCAGTTGCACACACAGCTAAAGTCTCTCAAAACATGCAAGAAAAGGAGGCCTGTGTCCCTTAAATTTTCCATCAAAGGGGTGAAGATGTATGATGAAGATGAGACGACCCTCCTCATGGCCCATGCTCTACGAAGGGTCTCCCTTTCCACTGCCCGCCCCTCGGACGCCCAGTTTGCCTTTGTTTCCCACAACCCCGGCAGCCCTGATGCCCAGCTATACTGCCACCTTTTCAAGGCTAGGCATGCCAGAGCAGCCCAGTTCCTGAACCTGTTGCTGTGCCGCTGTTTCCAGCTGTCCTACCTGGCAAAGCACCCAGAGGAGGCGCAGGATGAGTCTGTCGGCCCACTGCCCAGCCGTGCCCCCTCCCTCCTCAACCAGGGCTTCCCTCTCTGTGTCAGTGCCCTTGTGTCATTCCGAAGGGCCCCCACTCAGGGCTTACTCCCAGGGGAAAAGGTCTTCCCATTGAAGAACAACGGAACAACAACTGAGGAACAACCGAGCAGCCAAGAGGAGGTCTTCAACTCCTCTCCTTCCCTGGTGCGCAAGAGAGCCATCCGCAACAAAGTACTGCGCTCAGGAGCCTATCGCTCCTTCACTTACAGCCCTCACAAACAACGTCACCTTCAGGATCAGCTAAACTCTCCAGAAGggaaggggcAGGACAAAATGCCAGTGAGGAGAGCCCGGGCCCCGAGCCTTGCTGAAACAGAAGAAGCTCTGGCTCAAGCAGTGTGGTGTTGGGCTGGCATTGCCACTGACAGCAGCTCCTCCCTGCTTGCAGAGGATGTCCTGGGGTCGTACCTGCTGTGCCCCCATCCTAAGAGAACTGGCTGTGGCTCTCTCATAATTCGTTTCTCTTCTGGACTGGTCACCCACCTAATAAACAACACCTCCAACGGGAAATACCTGCTTGAGAACTGCCACATAGAATTTAGCACCATTGCTGCCTTGATAGAGCACTGCACCGATATCAAGGGGGAGCTGGACTGTCCGCTGAGTTGTGCCCGTGTGAACCACTGCTATGAGTGGGAGGAGAACGTTGCTAAGGCACTGCCTTTAGCCTTACACCAAGGCCTCAAAAGAAAGAATGCAAAATACACCCAGAGGAAACAATGGGTTTAAAAGTAATTTCTGATCATTGGATTGATCGATGTATCTCATTTTCTAAAAGACACTGACCATATGTTACACTGACACCTTAAATATATAATTCATTAACTTGCATGCTTCACTTTTGTTATTGTTTTCAGATTTCTGATAGAAACACAACTCTAACTATCAAATTTACTTCCAGCAGGTGAATTGTGATGAGTAGAGTAACATTTTGACACTTAGCCTCTGGGATGTAGGGTTGTTTTAATGTCAAAAAGCTGTGTGTTTGAGTATATTCTTCTATGTTTTAGCTGCACCTACCTTACTTCACCTACGTTTCAATTaaattattttaatacattttaattacattattttaaaACGTAGGaatattatgtgtgtgtttgtatagacTATATAGGGACATTTTTTTATAGATTAAGCAGACTAAGGTTTTTTTGTACATTAACTCTGACTCATGTTAAGCTGTCTTTTTGAATTTGTGTTTTTCACTGCTGTCTTTTAAAGTGTTCTGTGAGAACTAGCAGTATTTCTTCATTTTGATTACAGATAAATGTACTTCCTGAATTAAAGGgtattgttgtgttttatatttgtaAGCATAATGCATTGCCATATTGTATACTGTataccaggtattcccaaactggggtacgccaaataaaaatgtgattcacatatttttaaaatatatatatatatatatatatcttcaaatt

Function

NR:

description
SH2 domain-containing protein 5-like isoform X1

GO: NA

KEGG:

id description
K23701 SH2D5; SH2 domain-containing protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609727.2 False 2235 mRNA 0.45 9 53613567 53623906
XM_036983529.1 False 3026 mRNA 0.45 11 53613569 53623905
XM_036983530.1 False 2340 mRNA 0.45 10 53613569 53623906
XM_021609724.2 True 2311 mRNA 0.45 10 53613570 53623904

Neighbor

gene id symbol gene type direction distance location
kif17 kif17 coding downstream 11414 53589838 ~ 53602153 (-)
LOC118965356 NA coding downstream 83467 53526848 ~ 53530100 (-)
LOC110527988 plxna2 coding downstream 127339 53429947 ~ 53486228 (-)
LOC101268938 cd34 coding downstream 212774 53380501 ~ 53400793 (-)
LOC118965299 NA coding downstream 240138 53368443 ~ 53373429 (-)
LOC110527991 LOC106582993 coding upstream 358 53624264 ~ 53636278 (-)
LOC110527996 NA coding upstream 12877 53636783 ~ 53703957 (-)
LOC110527997 LOC106582992 coding upstream 80818 53704724 ~ 53732788 (-)
LOC110527999 LOC106582948 coding upstream 142160 53766066 ~ 53771880 (-)
LOC110527121 LOC106582947 coding upstream 150449 53774355 ~ 53775511 (-)
G623018 LOC106581772 non-coding downstream 200379 53412930 ~ 53413188 (-)
G623013 NA non-coding downstream 201824 53406030 ~ 53411743 (-)
G622987 NA non-coding downstream 287577 53303844 ~ 53325990 (-)
G623173 NA non-coding upstream 111142 53735048 ~ 53737808 (-)
G623176 NA non-coding upstream 117448 53741354 ~ 53748563 (-)
G623177 NA non-coding upstream 127003 53750909 ~ 53751186 (-)
G623178 NA non-coding upstream 127765 53751671 ~ 53751956 (-)
G623179 NA non-coding upstream 128351 53752257 ~ 53752465 (-)
G622985 NA other downstream 290736 53305536 ~ 53322831 (-)
G619733 NA other downstream 2655027 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 3307411 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 3677286 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 4316319 49295040 ~ 49297305 (-)
G625426 NA other upstream 1448573 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 1540586 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 1809550 55420466 ~ 55566988 (-)
G627254 NA other upstream 3067417 56691323 ~ 56696091 (-)
G627314 NA other upstream 3210679 56834350 ~ 56835092 (-)

Expression


Co-expression Network