LOC110527999 (LOC106582948)


Basic Information

Item Value
gene id LOC110527999
gene name LOC106582948
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53766066 ~ 53771880 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609754.2
CACCTCAATTCAAgctgtaggctcctctctctgcATCTCAAGGCTCTCTGAGACATCCGGGCTAATCTGAAAATGAAATCACTGAGTGTTGGTCTCGTGTTGACCTCTTGCATCCTCTGGGGCTCACTGAGTGTGGAGATTAGGGATGGAGAAAGGAGCTATCCCCTAGAGGCTGTGAAAGCGTTGAAGGAGCTGATCGACACAGAGGCCATTGTTAACCCGTGGTTGATCAACACCAACATGGTCTCTGTCTGTAACAACCGTGTCTTGCCACAGGCCTTCTATCCAGTGTGCCAGGGCAAAGAGGCAGCCATGGTCTTCTCCAGGCTAGtGGATGCCATCACGTCTCCAGATCTGTGTGAGATCTGTGCCCACCCCGCCTGCTTTGGGTGTCTACCGTAAGACTGCCACCATCTGTTACACAGTCCTCTGAAGCTTTCCTATCTACACCACACATCTTCTTCAGATCTGCATCGCATATGAAGCCAGGGCATGAATAAGCCCATCCTATCCATGTGCCAGGAGCCATTGATTGACATATTACATACACTTGAGGAATGTTATGTGTTTGATGTTGTTTGAGCTGTACGGCCAAAATCAAGTTATTTATAATTCAGCAAAAGGCTTTAAATGAACAGTAATGTCCAGATGTTCATGACATTTCCATGGATTACCATGGAATATGTGATAAATTCACTGTAGAAACTGTGAATCATAAATTTATATTGCTAATCAAA

Function

NR:

description
guanylin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609754.2 True 737 mRNA 0.46 3 53766066 53771880

Neighbor

gene id symbol gene type direction distance location
LOC110527997 LOC106582992 coding downstream 33278 53704724 ~ 53732788 (-)
LOC110527996 NA coding downstream 62109 53636783 ~ 53703957 (-)
LOC110527991 LOC106582993 coding downstream 129788 53624264 ~ 53636278 (-)
LOC110527994 LOC106582994 coding downstream 142160 53613567 ~ 53623906 (-)
kif17 kif17 coding downstream 163913 53589838 ~ 53602153 (-)
LOC110527121 LOC106582947 coding upstream 2475 53774355 ~ 53775511 (-)
LOC110527124 LOC106582988 coding upstream 48580 53820460 ~ 53835329 (-)
LOC110528002 LOC106582983 coding upstream 394671 54166551 ~ 54180404 (-)
LOC110528966 LOC106582980 coding upstream 422835 54194715 ~ 54198212 (-)
LOC110528004 LOC106582978 coding upstream 430794 54202674 ~ 54485213 (-)
G623198 NA non-coding downstream 434 53765346 ~ 53765632 (-)
G623192 NA non-coding downstream 4480 53761311 ~ 53761586 (-)
G623179 NA non-coding downstream 13601 53752257 ~ 53752465 (-)
G623178 NA non-coding downstream 14110 53751671 ~ 53751956 (-)
G623177 NA non-coding downstream 14880 53750909 ~ 53751186 (-)
G623240 LOC106582938 non-coding upstream 30027 53801907 ~ 53802189 (-)
G623496 NA non-coding upstream 150142 53922022 ~ 53922229 (-)
G623497 NA non-coding upstream 150460 53922340 ~ 53922590 (-)
G623515 NA non-coding upstream 183373 53955253 ~ 53955463 (-)
G623523 NA non-coding upstream 192955 53964835 ~ 53965052 (-)
G622985 NA other downstream 443235 53305536 ~ 53322831 (-)
G619733 NA other downstream 2807526 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 3459910 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 3829785 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 4468818 49295040 ~ 49297305 (-)
G625426 NA other upstream 1300599 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 1392612 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 1661576 55420466 ~ 55566988 (-)
G627254 NA other upstream 2919443 56691323 ~ 56696091 (-)
G627314 NA other upstream 3062705 56834350 ~ 56835092 (-)

Expression


Co-expression Network