LOC110527124 (LOC106582988)


Basic Information

Item Value
gene id LOC110527124
gene name LOC106582988
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53820460 ~ 53835329 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984488.1
AAGAAGATGAAGGTGAAATGGACTCAGTTGGGCATGGTGTTCTTCCTGTTGCTCTCCCTGGTCATGACAGGATGTTTCCTCTGGCAGTACCAGCTGCCAAAGTTACTGCCAGaTGAAGGCATGGGAGGCAATGCCAAATCAGAACGGATGTGCCCACGCTTCCCTGAGCCTCTCCCCCTGGAACACCCTATCCCTACCCTGAAAGAGGCACTAGAAAAGGTGGACACACTGCTGCGCCAGAGTGTCAACCCTGCCAGTCTTCCCTCTTTGTCGGCCATTGTGATTTTCAATGACACCGTTCTGTGGACTGGTAACTTTGGCAAGAGGAATGGAAGTGACCCACTCTCAGCTCCACCCAATGAATACACCATCTATAGGATTGCCAGCCTTTCAAAGATCTTCCCAACGCTGATGCTGTACAGGCTGTGGGAGGATGGGAAGATTGCCTCTCTGGATGACCCACTTGAGAAATATGTGGAGAACTTCACCATTAAAAACCCTCTGGGCAAGTCACGGGACTCTGAGCTCAAGTACGTGACAGACGGTCTGATCTTTCTGGACAGTGGAGAGGTTCAGATCCGCTCCTCCTCTGTCACCCTGCGCAGGATGGCCAGCCAGCTCTCAGGTCTACCCAGAAGACTTAGAGCCACTAACCTGCTATGGAAGGGGAAAACACAGGCTGCAGTGAATCTGCTGCAAGACGATGTCCTCGTTGCAGACCCTGGCACCAAATGCCACTACAGTAACCTAGCCTTCTCCTTATTGGCCCACGTCATGGCTGAGAAGGTGGTGGGCATGGACTACCAGCGCTGGATCAATGATAACATCCTGGACCGGCTGGGGATGGAGGATACAGGCTTCGACATCACCCCAGGGATCCACAGCCAGATGGCTGTGGGCGTCTACTCCAGTGGCCAGCCAGCCCCTCTGTATGACCTGGGTTGGTACCGCCCCTCAGGCCAGATGTTCTCCACTGCCGCTGACCTTGCCAAGCTGGCTATGATGCTGTTGGGGGCCTACCATCGCAAGCTCCTGGAGCCTGACACCCTGAAAATCATGCTGACCCCTCTGTTCCGCTGTGATAAGGACTACTTTGCCAACCGCACCGGCACACCATGGGAGGTGAATGAGCAGTTGGGCTACGAGGTGGTGCGTAAAGATGGAGACCTAGACGGCTACTCAGCCACCTTTTCACTGGTGCCCAGGCTTAAGCTGGGCCTGGTAGTGCTGATGGCTGGCACCAGACCTCAGAAGCAGGATGTGTTGGCCAAGGCTTACAGCCACATAATACCCGCTATGGAGAGGGCTTTCCGGGAGTCCAAGAAGATCCTCATCCCTCCCCCTAATCCAGACCCTTACATAGGCTTCTTCACCTACGGAAACATCACTTTCTATGAGATCAAAGCTGGGGCAGACGGAGTTCTGATCATGCAGCAGTTTGGTCCCCAGATTGAGGACCTGATCCCAGAGAGATATCGGACAATAAAGCTCAACTACCTGGTGGACAGGGTGTTTAGGGTGGTGTTTGAGAAAGAGTACCCTTGTGTCTTGCGGGTCAGCACCGCGTCTGTCTCCCTTGAGGCCCAAGACGGGCAGCTCTTTAACTTTTATGTGTTTGACAAGCGAGGTCTGTCCCCTGGCTTCGATGCACCAGGACTGAATACATACAATGTGGTCAGGATAGCCCATAGGCCGACTTTCTCGAACTAACTGAACTCATACATTGGAAAGGCGCATGAATGTGCAGGATGAAGGTCCTGTTTGGGTCTGTCGCCTATATTTAATAGTAATAATCTATATTGAAAGAGCACATTGCTGGAGGACAGTGAGTGGACAATACCATGATGCATTGCAAAAGAAGGTACACAGCTAGACAAAAAGGTGTTTAATTTACCCATTGTTGTCAACtcttgtacataatgttttcttTGATTTCCATGTCAAATAATGGCATTGTACAAATTCATCATTTTTATACAGTTGGTAACCTGACCTTAAACATATTATACTGTACACATTTACTGTATTGTGGCACAGTAATAgaggggttggttgtttagcaacaaaaccgacgcGCATGCAACCATGGGGCAAAATAGACAGGTTTGGCTTGGATTGTTggcaacatgtaaactatatttagtctcttgaaaacataaatacatttgcacaatgataacttgttgtctctcaaatacattgttacagttgttggtgaGCTAGCTAGCAACTTTTTGCTATATTAGCATTGagcatcagtcaaaacacctcaaaacaagacatgttaTCAATAACAAGATGAGATGAGCTGAAACAAGccccacatggcagtttcttgtcgTTCTTTCTAacaatctggccatccagaatgaCAACAACATGCTGTCTTCTGCCCCATGGAAGCGTGCACATCGTTTTCGTGATGTTGTCAGCTATCCCATCTATTGAGTCTTTCCTATGTTCTGCACATTGTTACTTTTATCAGTTTGTTCTGTCCTTACATTGCATTTGTAAGACAAAACTGGAAATATGGCATGCGGGAATCAATCAACACAATTAAATTGTAACACTTGAATTTGAAAGTGGAAGTTCATTCTTGTTCTTGCCCTATGAATTTAATTTTGATTAATCAAAAGATGTGCAATGTATGTTTCTACTGCAGCAAAACatggatttatttttatttgttatcaATGAATTGCCTGATCATTTTTGACCTACGAAAAATCCACAAGATATGTTCATGCCAAACAAAAAATAAGTCTCATTTTTAAATAGTGATCATGTTGGCATGTTTTGGCAAGGAGACCTTTTACAGTGTCTGTAGCCATACTGTACAGTAagtatactgtatgtgagaacAGACCAAAATGCTTTTGGCAGTCCAACCTTTGAGCAAAAATATATGCTTAAAAGGGGGATTGGGGACATAGTGGTATAGTTCCAGGAATGACTGTGCACAATATCATCCCAATTTGGACTCATTTAAATCCTCCTTATGAATAGATTTATATGACAAATATCTGTAGCTCATAAACTGACTCACAAAGAATAACCTTATGTGGTCCTCTTCTTTGGCATTTAGATTTTCTAATGTAATACTAAGTAGGGGAAAAACATACAGCTATGACTAACTAGAGTTCcctcacagttgatttcttcaaaccaagctgcttacctattgcagattcagtcttccaagcctgg

Function

NR:

description
PREDICTED: putative beta-lactamase-like 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984488.1 True 3207 mRNA 0.46 6 53820460 53835329
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110527121 LOC106582947 coding downstream 44949 53774355 ~ 53775511 (-)
LOC110527999 LOC106582948 coding downstream 48580 53766066 ~ 53771880 (-)
LOC110527997 LOC106582992 coding downstream 87672 53704724 ~ 53732788 (-)
LOC110527996 NA coding downstream 116503 53636783 ~ 53703957 (-)
LOC110527991 LOC106582993 coding downstream 184182 53624264 ~ 53636278 (-)
LOC110528002 LOC106582983 coding upstream 331222 54166551 ~ 54180404 (-)
LOC110528966 LOC106582980 coding upstream 359386 54194715 ~ 54198212 (-)
LOC110528004 LOC106582978 coding upstream 367345 54202674 ~ 54485213 (-)
LOC110528967 LOC106565901 coding upstream 972320 54807649 ~ 54961056 (-)
LOC110528005 LOC106582976 coding upstream 1163112 54998441 ~ 55036498 (-)
G623240 LOC106582938 non-coding downstream 18271 53801907 ~ 53802189 (-)
G623198 NA non-coding downstream 54828 53765346 ~ 53765632 (-)
G623192 NA non-coding downstream 58874 53761311 ~ 53761586 (-)
G623179 NA non-coding downstream 67995 53752257 ~ 53752465 (-)
G623178 NA non-coding downstream 68504 53751671 ~ 53751956 (-)
G623496 NA non-coding upstream 86693 53922022 ~ 53922229 (-)
G623497 NA non-coding upstream 87011 53922340 ~ 53922590 (-)
G623515 NA non-coding upstream 119924 53955253 ~ 53955463 (-)
G623523 NA non-coding upstream 129506 53964835 ~ 53965052 (-)
G623526 NA non-coding upstream 133225 53968554 ~ 53968806 (-)
G622985 NA other downstream 497629 53305536 ~ 53322831 (-)
G619733 NA other downstream 2861920 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 3514304 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 3884179 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 4523212 49295040 ~ 49297305 (-)
G625426 NA other upstream 1237150 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 1329163 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 1598127 55420466 ~ 55566988 (-)
G627254 NA other upstream 2855994 56691323 ~ 56696091 (-)
G627314 NA other upstream 2999256 56834350 ~ 56835092 (-)

Expression

LOC110527124(LOC106582988) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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LOC110527124(LOC106582988) Expression in each Bioproject

Bar chart with 14 bars.
LOC110527124(LOC106582988) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 500.
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Co-expression Network