LOC110528002 (LOC106582983)


Basic Information

Item Value
gene id LOC110528002
gene name LOC106582983
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 54166551 ~ 54180404 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609763.2
AGCATTTAGGTTACTGTAAGAAGAAGGAACATGGATTTTAAGTGTTTGAGCTGTATAGTGTTTTTCCCCATACACATTGTCTACTACATATTGAAAGCAAGTGTGTACTTAATTTTACCAAGTAGACGAAGAACCCTGATCAAGGAGGTGGTCCTGATCACAGGCGGGGGACGAGGTATCGGTCGTCACCTGGCTCAGGAGTTTGCCAAGCAGGGTGCTAAAAAGGTGATCCTGTGGGGCCGCACAGAGAAGTGTCTGAAAGAGACATGCGAAGAGATCTCCCAATTTGGAACAGAGTGCCACTACTTCCTGTGCGACGTGGCCAATCGGGAGGACGTTTACAAGCAGGCCAAGGTGGTCAGGGAGAAGGTGGGAGACGTTACGATCCTGGTGAATAATGCTGCAGTGGTCCATGGGAAAAGTCTGATGGACAGCGACGATGACTGTCTTTTGAAATCTCAACATATCAACACAATGGGACAGTTCTGGACTACAAAGGCCTTCCTGCCACGGATGCTGGAGCTCCAGCACGGCCATGTGGTCTGTATAAACTCCATCCTGTCCCAGTCGCCCATCCCTGGGGCCATCGACTACTGTACCTCCAAGGCCTCCTCCCTGGCCTTCATGGAGAGCCTGACTCtgggcctgctggactgtcccgGAGTGGGCTGCACCACCGTGCTCCCCTTCCACACCAACACTGAGATGTTCCAGGGCATGAGAGTTAGGTTTCCAGCGCTCTTCCCTCCCCTCAAGCCAGAGACAGTTGCTGAAAGGACTGTGGATGCAGTCAGAACTAACACAGCCTACGTTTACATGCCCTGGACCATGCATGCTCTCGTTGTCCTCAAAAGCTTCATGCCACAAGCTGCTCTTGAAGAGATCCACAAGTTCTCTGGAAGCTATACCTGCATGAATACATTCAAGGGGAGGACATAAAAACAAATTATCCTGAATGTCAATACATATCAGAGGAACCTCACTATGTCTGGAGGATGTTGAAGGGAAGTATCCATGGGCTACAGGACATTGGGAAACAATGGATGCCCTTTGAAAGTATGCAGGAAGGTGTCTTGGAGACTTTAGCGTACTGTATATGGTTGCTCCGACGGGGTAGATTTCACTTACACGCTGCTGGAACTTATCCTGGTCTCTTTCTTGATCTCCTGTGTGTAGTTGGACGGACTAAATACCATTCACACATTGAGCAGAAGCCATGCAAAACTAGTCTGGATAAACAGCAGTTTTTTTTTCAAGTCTGTTTTTTATTATCCTTTGTTTTCTACCAATCATGTGTCTTTGAATGGAATCACATTAATAAATTGATGTTACAGACAACCAAA

Function

NR:

description
short-chain dehydrogenase/reductase 3-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11146 DHRS3; short-chain dehydrogenase/reductase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609763.2 True 1343 mRNA 0.48 6 54166551 54180404

Neighbor

gene id symbol gene type direction distance location
LOC110527124 LOC106582988 coding downstream 331222 53820460 ~ 53835329 (-)
LOC110527121 LOC106582947 coding downstream 391040 53774355 ~ 53775511 (-)
LOC110527999 LOC106582948 coding downstream 394671 53766066 ~ 53771880 (-)
LOC110527997 LOC106582992 coding downstream 433763 53704724 ~ 53732788 (-)
LOC110527996 NA coding downstream 462594 53636783 ~ 53703957 (-)
LOC110528966 LOC106582980 coding upstream 14311 54194715 ~ 54198212 (-)
LOC110528004 LOC106582978 coding upstream 22270 54202674 ~ 54485213 (-)
LOC110528967 LOC106565901 coding upstream 627245 54807649 ~ 54961056 (-)
LOC110528005 LOC106582976 coding upstream 818037 54998441 ~ 55036498 (-)
LOC110528006 LOC106582975 coding upstream 866889 55047293 ~ 55052787 (-)
G623746 NA non-coding downstream 6606 54159656 ~ 54159945 (-)
G623716 NA non-coding downstream 15813 54150494 ~ 54150738 (-)
G623592 NA non-coding downstream 107642 54058636 ~ 54058909 (-)
G623590 NA non-coding downstream 110578 54055747 ~ 54055973 (-)
G623587 NA non-coding downstream 114701 54051645 ~ 54051850 (-)
G623767 NA non-coding upstream 5017 54185421 ~ 54186796 (-)
G623771 NA non-coding upstream 10431 54190835 ~ 54191921 (-)
G624025 NA non-coding upstream 82276 54262680 ~ 54264094 (-)
G624055 NA non-coding upstream 152145 54332549 ~ 54332911 (-)
G622985 NA other downstream 843720 53305536 ~ 53322831 (-)
G619733 NA other downstream 3208011 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 3860395 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 4230270 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 4869303 49295040 ~ 49297305 (-)
G625426 NA other upstream 892075 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 984088 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 1253052 55420466 ~ 55566988 (-)
G627254 NA other upstream 2510919 56691323 ~ 56696091 (-)
G627314 NA other upstream 2654181 56834350 ~ 56835092 (-)

Expression


Co-expression Network