LOC110528966 (LOC106582980)


Basic Information

Item Value
gene id LOC110528966
gene name LOC106582980
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 54194715 ~ 54198212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983545.1
TCTCTGCAGCACGCTGGGTGCCGGCTACCATTGGCTAAGATGCACTGAAAGAAATACCCAGACAAAAAGGTTGTTAAACTTGGCAACTCGTCCGTTTAGATATGCCCATAGCAGACCTGCTGGGTGTCCAGTTTGACATTCACCTGCTGGGGAGGCTGACGTGTTCGTTGGCCGCTGTGCTGCTCATCTCCTGTGTATACAGATTCTACAGCCCCATGGGTACAGGCCTCCTTCAGACGGGCCCACTGAAGCACCCAATGGAATCTGTCGGAACTGCAAGATGGAACTGCGGCCTCAAAGCACAGCCAAACATGACTCCAGAAACAATGGGGACAAACAGCCTGGCCACTCACAGATTAGCCCTGTGAGGGATGACCTGACACCTGACAACACCAATACAGGAACAGGGGAAGGAGAATTGCCCCAGACTAAAGATGTTTGCCGGCTCGCAAACACTGAAGAAATGGTTACGCCGCAGGATGGATCAAATGTAGAAGACAACAGCTTGGAGTTGGAGGGAGAAGTCCCTGCTGTGTTTGTTGAGGAGGCTGAGATAGATATCCCCATGTTAGTTGAAGAGGCTGAGATTAAGATCAGATATTGCAAGTTTGGAGCCACCTTGAAACTCCCTTATCCTAATAACAGTGGTCTGGCCAGCCCATCTGTCCCCTTCCTTTCTGCAGAGGCTGGAGGTAAGTGTGGGGGTGGGTGTGGACAGGGAACTGAGGCAAGACCTGGGGCTGCATGGGGCCTACTCCACCTTCCTCTCAAAGGCAGAGATCACATTGGAGGATGCCAACCTCGTGATGGAGGGACCTGAGAAGCAGAGCGTTGTGCGAGGAAAGATTTATGAATACTGTGTGGAATGTTCCTCGCACTCCATCACAGACTCCATATTAGGTCTGTTTGAGGGGAATTCACTGGACTCACAGTCGGTGGAGTTTGGAAGATGTGGCAGCAGCCTCACTGAGCCTCCCCACTCTCGGGCCTCTTCATCAGGGGATCCCAGCCCTGTCAGCCCACTCAGTCCTACCACAGACACCAGGCACCCCAGTGCATGGGAGGTGCACAGCCTAGAAACCATAGCTGGGGCCAAATGTATAAATCTGCCTCCAGAAAACAGCTCAGAGTTGGAGATCTTTAAGTTTGATTTGGGCAACTGCGTGGAGGTGGAGCTGTCTAAGAAGCATGGGCAGGCCCCTCTGCAGCAGTCAGCTCTTAGAGTGATGTCTGACAACTACCTCCAGATCCTCAGGGACCCAGGTCTGTATGGGAGGCTGAGAGCAGGTGATCAGGATGAGATCCAGAAACAGCGTATGAGAGGAAGGCAATTCCTAATGGCAGGCAACATGGGCCCTCAGGACTGGGTGGGGAGTAGTCCTCAAGGGACAAAAAGGGAGCAGGGAGTCACCACCATACCATGTAGTGGTCTCTACTATTATGATGATTATAAAGACAGCTGGCACCCACTGTGTCCCATCCCTCAGGAAGTCATCTCCAAAGGCTGTGCCATGTGCACTATGGACAACTACTTATTTGTAGCAGTGGGGGGCAGCCAGCAGGGTGCAGATAGAGAGATGAAGCCTTCCAAGAGAGTGTTCTGCTACAACCCCGTAACATCAAAAAATTCTTGGAAAGAGATCAGTCCTATGAACGAGTCCAGGCCCCACTGCAAACTGGCAGCCCTGCAGGGCTACATCTATGCAATCGGAGGGGAGTGTCTGTCTACCGTAGAGCGCTATGACCCCAGCTCTGACAGATGGACTTTTGTGGCCCCACTGCCCAATGATACATTTGCTGTGGCCCATCATGTCACAGTGTGCAACAGGAAGCTCTTTGTTCTAGGAGGAACACTGAGATACACACTGTTGCACAACCCAAATATCAACGTGTGGAGGAAAAGCTCAATAACGGGCAGCAAAGAGAGAACCACCGAGATAGTGGGAGTGAGAAACTTCCTATATCGCTTTGATGTCAGCCCGCAGCTAGGCATCAGTGTGTACCGCTATCACACTGTGGCACGACTATGTTACGAGTGCTGCACCAAACGCCTTGACCAATGCCTCGCCTTCCAGTGTGTCGCCTTGGACGACACCATCTACTGCATGAGCCACCAGCTCACCATGAGCTTCCGGGCTGAagagatctctccaagatttgtAGCAGATGATTTGAGTGTCCTCTCTGGAGCCAAGGGCATCCTTTTCCCGTTTGTCCTCTCACTTCCTGATACGAAGGCTCACCAGACCAGGGTGTAACCTGGAATGCTTCTCCCCAGCACAGACAAGGGCAGAGCAGTGAGGGAGTATCTAATTTACTTGTGCACCAAGGCCATTTTTCAGAGCTGAGTGTATCCTACTGAGAAGCACAGCTGTCTTAATCAGAGGCAATGAAAGTAAAATATTAACATCATTAATGGTAATTCGATTACTGCTTGTTTAGATTTATTTAGGGTACACTGCCATAGAAATTCTATGTATTGTGAAGGTGTTTTGTTCTTTTCATTTTCCTCCTGCCTTGCACTACATTACTCCTAAATCATGCAAGATGTGCACTTTCTCCCCTGTAATAATTCATAAAAAATTCTTAAGTTAATTCACTCTAGCCATAATGCTTTGGAGCAGTGGGGTAATATAGTGATAATCCATCACAGTTGGTTACTATACAGGGAAGAAATATTACTCACACAGGGACTGGACTCAATACAATTACCCACATGTGATCTATAAATATGACATGATGTAAAAGGTTGTGACTTACAGCATAATGTATGTGAGCTTCAATAAACAAAAGTAATTGCTCATTTTGAATCTCCTCCAAGATTGGGGCATAGTATACGCCTGATTTCTGCGGTTGTTTTCAACATTGTTGATATAAGGATAGCGCTGAACCATGTTCAGTTATTCATGTACCAAAATAACGAATGACTGTAATGAAAGTACAAATATTTATCCTTACATTTGTACATTATTGATCAACAGAAGAAAGAAACATGTAGATTTCATTTGAAGGTTACTTATCTAAGCAGTCATACAACTCagttggaaaaaaaaaaaactgtaagcaTTTTGTGCAACAATGTGCTAGCTATTATGTCATGTggttaaacattattaaaattaAATTAATTTTCCTTCCAAACAGTGACAGATTTCCAATGATAATTCATCAACAATCTAACAAAGAGAGCTCTGCTGTGTGATGTGTCGTTTGTGACAGCAGACTTCATTAATGCATTTGTAGGAGGATAGATGTGGCTGTTAATGGATGTGTTGCGTAATTACATTGACAATATACatattcaaaataaaagtataatTCTTTGTTCATTTAAAACAAGCTGTTTGTTCTTACAAAGAGCAATCATAGACTAAGAACAACAGTGAGTGATACAGCACCCTTGCCTGggatttcagtttgtgacatgCCGCTATAGCGCCATCATGTGGTTTGgtctatgtatatatatatatatatatatatatatatatatatat
>TU709420
GCTACATCTATGCAATCGGAGGGGAGTGTCTGTCTACCGTAGAGCGCTATGACCCCAGCTCTGACAGATGGACTTTTGTGGCCCCACTGCCCAATGATACATTTGCTGTGGCCCATCATGTCACAGTGTGCAACAGGAAGCTCTTTGTTCTAGGAGGAACACTGAGATACACACTGTTGCACAACCCAAATATCAACGTGTGGAGGAAAAGCTCAATAACGGGCAGCAAAGAGAGAACCACCGAGATAGTGGGAGTGAGAAACTTCCTATATCGCTTTGATGTCAGCCCGCAGCTAGGCATCAGTGTGTACCGCTATCACACTGTGGCACGACTATGTTACGAGTGCTGCACCAAACGCCTTGACCAATGCCTCGCCTTCCAGTGTGTCGCCTTGGACGACACCATCTACTGCATGAGCCACCAGCTCACCATGAGCTTCCGGGCTGAagagatctctccaagatttgtAGCAGATGATTTGAGTGTCCTCTCTGGAGCCAAGGGCATCCTTTTCCCGTTTGTCCTCTCACTTCCTGATACGAAGGCTCACCAGACCAGGGTGTAACCTGGAATGCTTCTCCCCAGCACAGACAAGGGCAGAGCAGTGAGGGAGTATCTAATTTACTTGTGCACCAAGGCCATTTTTCAGAGCTGAGTGTATCCTACTGAGAAGCACAGCTGTCTTAATCAGAGGCAATGAAAGTA
>TU709434
CAAATGTATAAATCTGCCTCCAGAAAACAGCTCAGAGTTGGAGATCTTTAAGTTTGATTTGGGCAACTGCGTGGAGGTGGAGCTGTCTAAGAAGCATGGGCAGGCCCCTCTGCAGCAGTCAGCTCTTAGAGTGATGTCTGACAACTACCTCCAGATCCTCAGGGACCCAGGTCTGTATGGGAGGCTGAGAGCAGGTGATCAGGATGAGATCCAGAAACAGCGTATGAGAGGAAGGCAATTCCTAATGGCAGGCAACATGGGCCCTCAGGACTGGGTGGGGAGTAGTCCTCAAGGGACAAAAAGGGAGCAGGGAGTCACCACCATACCATGTAGTGGTCTCTACTATTATGATG
>TU709435
GGCCTACTCCACCTTCCTCTCAAAGGCAGAGATCACATTGGAGGATGCCAACCTCGTGATGGAGGGACCTGAGAAGCAGAGCGTTGTGCGAGGAAAGATTTATGAATACTGTGTGGAATGTTCCTCGCACTCCATCACAGACTCCATATTAGGTCTGTTTGAGGGGAATTCACTGGACTCACAGTCGGTGGAGTTTGGAAGATGTGGCAGCAGCCTCACTGAGCCTCCCCACTCTCGGGCCTCTTCATCAGGGGATCCCAGCCC
>TU709437
GAGAATTGCCCCAGACTAAAGATGTTTGCCGGCTCGCAAACACTGAAGAAATGGTTACGCCGCAGGATGGATCAAATGTAGAAGACAACAGCTTGGAGTTGGAGGGAGAAGTCCCTGCTGTGTTTGTTGAGGAGGCTGAGATAGATATCCCCATGTTAGTTGAAGAGGCTGAGATTAAGATCAGATATTGCAAGTTTGGAGCCACCTTGAAACTCCCTTATCCTAATAACAGTGGTCTGGCCAGCCCATCTGTCC
>TU709438
CAGACCTGCTGGGTGTCCAGTTTGACATTCACCTGCTGGGGAGGCTGACGTGTTCGTTGGCCGCTGTGCTGCTCATCTCCTGTGTATACAGATTCTACAGCCCCATGGGTACAGGCCTCCTTCAGACGGGCCCACTGAAGCACCCAATGGAATCTGTCGGAACTGCAAGATGGAACTGCGGCCTCAAAGCACAGCCAAACATGACTCCAGAAACAATG

Function

NR:

description
PREDICTED: kelch domain-containing protein 7A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983545.1 False 3497 mRNA 0.46 2 54194715 54198212
TU709420 False 706 lncRNA 0.51 1 54195814 54196519
TU709434 False 353 lncRNA 0.51 1 54196767 54197119
TU709435 False 264 lncRNA 0.54 1 54197201 54197464
TU709437 False 255 lncRNA 0.47 1 54197545 54197799
TU709438 True 218 lncRNA 0.55 1 54197884 54198101

Neighbor

gene id symbol gene type direction distance location
LOC110528002 LOC106582983 coding downstream 14311 54166551 ~ 54180404 (-)
LOC110527124 LOC106582988 coding downstream 359386 53820460 ~ 53835329 (-)
LOC110527121 LOC106582947 coding downstream 419204 53774355 ~ 53775511 (-)
LOC110527999 LOC106582948 coding downstream 422835 53766066 ~ 53771880 (-)
LOC110527997 LOC106582992 coding downstream 461927 53704724 ~ 53732788 (-)
LOC110528004 LOC106582978 coding upstream 4462 54202674 ~ 54485213 (-)
LOC110528967 LOC106565901 coding upstream 609437 54807649 ~ 54961056 (-)
LOC110528005 LOC106582976 coding upstream 800229 54998441 ~ 55036498 (-)
LOC110528006 LOC106582975 coding upstream 849081 55047293 ~ 55052787 (-)
LOC110528008 atrap coding upstream 881772 55079890 ~ 55101228 (-)
G623771 NA non-coding downstream 2794 54190835 ~ 54191921 (-)
G623767 NA non-coding downstream 7919 54185421 ~ 54186796 (-)
G623746 NA non-coding downstream 34770 54159656 ~ 54159945 (-)
G623716 NA non-coding downstream 43977 54150494 ~ 54150738 (-)
G623592 NA non-coding downstream 135806 54058636 ~ 54058909 (-)
G624025 NA non-coding upstream 64468 54262680 ~ 54264094 (-)
G624055 NA non-coding upstream 134337 54332549 ~ 54332911 (-)
G624191 LOC100136012 non-coding upstream 303410 54501622 ~ 54501860 (-)
G624276 NA non-coding upstream 323718 54521930 ~ 54563391 (-)
G624326 NA non-coding upstream 383369 54581581 ~ 54581817 (-)
G622985 NA other downstream 871884 53305536 ~ 53322831 (-)
G619733 NA other downstream 3236175 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 3888559 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 4258434 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 4897467 49295040 ~ 49297305 (-)
G625426 NA other upstream 874267 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 966280 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 1235244 55420466 ~ 55566988 (-)
G627254 NA other upstream 2493111 56691323 ~ 56696091 (-)
G627314 NA other upstream 2636373 56834350 ~ 56835092 (-)

Expression


Co-expression Network