LOC110528004 (LOC106582978)


Basic Information

Item Value
gene id LOC110528004
gene name LOC106582978
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 54202674 ~ 54485213 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609767.2
ATGATAGAGCGcgcaggagagcgagagagagagagagagagagaaagagggagatacgCATTGACTGAGAAACATAGATTTTCATCCAACCTATCTGTTTTTTCTAATCCTCGACTGCACTGCTTAACGTTGATTGTCTAGCAGGACAATATTTTGTATTAGCCTATTACGTCGTTTCTTTTGACGAATATTGGTCCTCATTGCTGTAATTTAAGTGTATTTGTGGCGAACTTCTCATATTTCCCATTTATACTTAAACTGCATCATGAATAGTTTGTGGGCACCTCTCGATCTCATACCTTTGGAATGGTGGGGATTACACAGCCGAAAAACGGGGAGCATGTAAACGCGGATGGAGTTTGGGATTTATTGCAAAATAAGGGAAAGATGACTGTCTTCTCTTTGTGTCTCCTATTGTGCGCAGATCTACTGGATTTAGCTGTTGGATATTTGACAGTAACCATTGAGCCCCTTCCTCCTGTTGTTGTGGGAGAGACTGTCACCCTGAAGTGCAACTTCAAGACTGATGGAAGACTTCGAGAGATCGTATGGTATAGGGTCACAGACGGGGGCACCATTAAGCAGAAAATCTTCACCTACGATGCTATGTTTAATACCAATTACTCTCATATGGAGGACTACCGCAAACGGGAAGACCTTGTCTACCAATCTACAGTCCGGCTCCCGGAGGTACGGATCTCGGACAATGGACCGTATGAATGCCACGTGGGCATCTACGACCGAGCGACGAGAGAAAAGGTGGTCTTGGCATCAGGAAACGTCTTTCTCACCGTTATGTCACCTCCAAACAACATCTCAGTTTCGGCAGAGAACTGTCCAGCTCCATTCAGCCGGTACCAGGCCCAGAACTTCACACTGCTGTGCACTGCAAAGGGAGGCAAACCTGCACCTTCAgtgtacTTTAAGCGGGATGGAGAGTTGATAGAGGTGATATCCTACATCCACCCCTCAGCCGAGGACGGCGGTGGCTCAGCAGGGGTGCGTGGTGCCAGGCCACTCATTAGCAGAGACCTGGACGACACCAAGCTGCAGAGGTCCCTCTCCCTGTTGGACCCCGAGGGCCGGCCAGCCCGCATGTTCACCGAGAGCCCTGAGCGTCGTTGGACTCCGGGCCAGCACACCCAGGGTCGGCAGCAGAAGGAGCAGCCCAGCCCTGCCACGGAGATCATTCCAGAGACAGTTGTGAGCCGGGAGTTCCCTCGCTGGGTCCAGAGCACTGACCCACTCTACTACTTCAGTCACACCCACATCTCCCAGAGTGATGGCTCTGTGCTGGTGCAGGCCAGACTCACCTGGACCCTTAACCCCCAGCTGGACAATGACGCCATGTTCAGCTGTGAGGTCAAGCACCCAGCACTCTCCATGCCCATGCAGACAGAGGTCACACTGGcggCTCCTAAGGGCCCCAAGCTTTTGATGACCCCCACCAGGGCAAAGGTAGGGGATACGGTGCGCATCACCGTGCAAGGATTCCAGAATGAGGTGTTCCCTGAGCCCCTCTTCACCTGGACCCGGGTCGGGGGCCGTCTGCTTGACGGGAGTGCTGAGCGGGATGGGAAGGAGCTGATTCTGGAGCGAGTGCCAGCCGAACTCAACGGCTCCATGTACCGCTGCACGGCCCAGAATCCTCTGGGCTCCACGGACACGCACACCCGCCTCATCGTCTTTGAAAATCCTGCCATGATGAAAAACACTCAGAATCCGAACAATGGAGCCCCTCGCGTGGATGTAGTCGGACTAATATGGATGGTGCTGTCCCTGGCCCTCACAGTGACTGTGGAACTGACGTGAACCCTCCCAGCCAACACACactctgtatacacacacacaacacacagtagacccacagagacacaaacacacacaaacaatcccAAGCCtttccaacacacatacacacaccacatacacatacCACAAGCCcaaaacaccaccacaccacaaacagacacacatacaacCACACCACACAGTCCTGCAAGCCTTTTCCAGTCATCCAACCTGCCCTCCATGCATCAGTCTTTCAGGAACCAGTGCCACCACCCGATGGGCCTCTACTCTGTTTTTGAAATGAAATAATAACAAAGATtataatataaagaaaacaacTTCCTGAACATGAGAATAACCACCTCCAGTATGCCCCTTCCCCCGACCACACCTTCTTTTTGTTTCTTGTCACACCTCTGCCTGTTGATCAATAAAATTAGTTGttaaaaaaggaaaataaaaagcATTTGGGTTTGTTTTGATATGTTCAAATGTTGCAAGTGTGAAGAGAGACACTGAGCCGACGAGTGTGGGAGGGCCAACCAGTTGTCCCATTCACTGGGCTGTGTTGTACCCAGTCTTTAAGCTACACATAAACAACTGGGAACAAATGTGAACGCTCAATGAGCACGTTATTTTTTATCACGATTACAGGTATTTCTTTTCTTGGATGGCTTGGAATGTACAAGAGGACTAAACGCAAAGAGAAAATGGAAAATCTCCTTTTTGAGTGTATTTTGTGTACATCTGTGTAAATATTGAAGATAATCAAAGAGGTTTTATGGGTTCAGGTTAGGATTGGTTGGTGAAGAGTTGGGAGGGTTTGCAGCAGCTCACAGCCTTTGTTTGTATTTTCTCATCCTTTATCGCTGTTTCAAGAGATAATCCTATAGGCTGTCAGGACAGAACAGTTTACAGCCTTCTGATCCCATTCATTCAGTCTCTACATCTGTGTGACAAGTTTGAAAATGAGGACAGAAAAAAACAATGCAAATATCCTACATTATGTCTGCCGTTTTGGACTTGTAGTGCATGTGACGTTTGACAATTCGTTCTCCTTTTCGTGTTTTGCAGTGGTCAACACTGCATCTCATTGTCACTGGCCTGTAATCCAGTTATTTACTTGTTACATACTTAAGTGACATTGCATTATGTACAATATGTAACTCTTCCCCCTGACATCTCCTAGTAGGATCATGTTAGCCACCATTTCAGGAAGATGCTCACCTGAAGCAGAGTGCTAACAGGGTTGTTGCATTTGTTTCATATCACCTGTATTAAAATGGAGAGATTATCAAATAA
>XM_021609765.2
GGATGATAGAGCGcgcaggagagcgagagagagagagagagagagaaagagggagatacgCATTGACTGAGAAACATAGATTTTCATCCAACCTATCTGTTTTTTCTAATCCTCGACTGCACTGCTTAACGTTGATTGTCTAGCAGGACAATATTTTGTATTAGCCTATTACGTCGTTTCTTTTGACGAATATTGGTCCTCATTGCTGTAATTTAAGTGTATTTGTGGCGAACTTCTCATATTTCCCATTTATACTTAAACTGCATCATGAATAGTTTGTGGGCACCTCTCGATCTCATACCTTTGGAATGGTGGGGATTACACAGCCGAAAAACGGGGAGCATGTAAACGCGGATGGAGTTTGGGATTTATTGCAAAATAAGGGAAAGATGACTGTCTTCTCTTTGTGTCTCCTATTGTGCGCAGATCTACTGGATTTAGCTGTTGGATATTTGACAGTAACCATTGAGCCCCTTCCTCCTGTTGTTGTGGGAGAGACTGTCACCCTGAAGTGCAACTTCAAGACTGATGGAAGACTTCGAGAGATCGTATGGTATAGGGTCACAGACGGGGGCACCATTAAGCAGAAAATCTTCACCTACGATGCTATGTTTAATACCAATTACTCTCATATGGAGGACTACCGCAAACGGGAAGACCTTGTCTACCAATCTACAGTCCGGCTCCCGGAGGTACGGATCTCGGACAATGGACCGTATGAATGCCACGTGGGCATCTACGACCGAGCGACGAGAGAAAAGGTGGTCTTGGCATCAGGAAACGTCTTTCTCACCGTTATGTCACCTCCAAACAACATCTCAGTTTCGGCAGAGAACTGTCCAGCTCCATTCAGCCGGTACCAGGCCCAGAACTTCACACTGCTGTGCACTGCAAAGGGAGGCAAACCTGCACCTTCAgtgtacTTTAAGCGGGATGGAGAGTTGATAGAGGTGATATCCTACATCCACCCCTCAGCCGAGGACGGCGGTGGCTCAGCAGGGGTGCGTGGTGCCAGGCCACTCATTAGCAGAGACCTGGACGACACCAAGCTGCAGAGGTCCCTCTCCCTGTTGGACCCCGAGGGCCGGCCAGCCCGCATGTTCACCGAGAGCCCTGAGCGTCGTTGGACTCCGGGCCAGCACACCCAGGGTCGGCAGCAGAAGGAGCAGCCCAGCCCTGCCACGGAGATCATTCCAGAGACAGTTGTGAGCCGGGAGTTCCCTCGCTGGGTCCAGAGCACTGACCCACTCTACTACTTCAGTCACACCCACATCTCCCAGAGTGATGGCTCTGTGCTGGTGCAGGCCAGACTCACCTGGACCCTTAACCCCCAGCTGGACAATGACGCCATGTTCAGCTGTGAGGTCAAGCACCCAGCACTCTCCATGCCCATGCAGACAGAGGTCACACTGGcggCTCCTAAGGGCCCCAAGCTTTTGATGACCCCCACCAGGGCAAAGGTAGGGGATACGGTGCGCATCACCGTGCAAGGATTCCAGGTAGGCGCTGGGGTTCCTGGGAATGAGGTGTTCCCTGAGCCCCTCTTCACCTGGACCCGGGTCGGGGGCCGTCTGCTTGACGGGAGTGCTGAGCGGGATGGGAAGGAGCTGATTCTGGAGCGAGTGCCAGCCGAACTCAACGGCTCCATGTACCGCTGCACGGCCCAGAATCCTCTGGGCTCCACGGACACGCACACCCGCCTCATCGTCTTTGAAAATCCTGCCATGATGAAAAACACTCAGAATCCGAACAATGGAGCCCCTCGCGTGGATGTAGTCGGACTAATATGGATGGTGCTGTCCCTGGCCCTCACAGTGACTGTGGAACTGACGTGAACCCTCCCAGCCAACACACactctgtatacacacacacaacacacagtagacccacagagacacaaacacacacaaacaatcccAAGCCtttccaacacacatacacacaccacatacacatacCACAAGCCcaaaacaccaccacaccacaaacagacacacatacaacCACACCACACAGTCCTGCAAGCCTTTTCCAGTCATCCAACCTGCCCTCCATGCATCAGTCTTTCAGGAACCAGTGCCACCACCCGATGGGCCTCTACTCTGTTTTTGAAATGAAATAATAACAAAGATtataatataaagaaaacaacTTCCTGAACATGAGAATAACCACCTCCAGTATGCCCCTTCCCCCGACCACACCTTCTTTTTGTTTCTTGTCACACCTCTGCCTGTTGATCAATAAAATTAGTTGttaaaaaaggaaaataaaaagcATTTGGGTTTGTTTTGATATGTTCAAATGTTGCAAGTGTGAAGAGAGACACTGAGCCGACGAGTGTGGGAGGGCCAACCAGTTGTCCCATTCACTGGGCTGTGTTGTACCCAGTCTTTAAGCTACACATAAACAACTGGGAACAAATGTGAACGCTCAATGAGCACGTTATTTTTTATCACGATTACAGGTATTTCTTTTCTTGGATGGCTTGGAATGTACAAGAGGACTAAACGCAAAGAGAAAATGGAAAATCTCCTTTTTGAGTGTATTTTGTGTACATCTGTGTAAATATTGAAGATAATCAAAGAGGTTTTATGGGTTCAGGTTAGGATTGGTTGGTGAAGAGTTGGGAGGGTTTGCAGCAGCTCACAGCCTTTGTTTGTATTTTCTCATCCTTTATCGCTGTTTCAAGAGATAATCCTATAGGCTGTCAGGACAGAACAGTTTACAGCCTTCTGATCCCATTCATTCAGTCTCTACATCTGTGTGACAAGTTTGAAAATGAGGACAGAAAAAAACAATGCAAATATCCTACATTATGTCTGCCGTTTTGGACTTGTAGTGCATGTGACGTTTGACAATTCGTTCTCCTTTTCGTGTTTTGCAGTGGTCAACACTGCATCTCATTGTCACTGGCCTGTAATCCAGTTATTTACTTGTTACATACTTAAGTGACATTGCATTATGTACAATATGTAACTCTTCCCCCTGACATCTCCTAGTAGGATCATGTTAGCCACCATTTCAGGAAGATGCTCACCTGAAGCAGAGTGCTAACAGGGTTGTTGCATTTGTTTCATATCACCTGTATTAAAATGGAGAGATTATCAAATAA

Function

NR:

description
immunoglobulin superfamily member 21-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609767.2 False 3093 mRNA 0.48 10 54202674 54485211
XM_021609765.2 True 3116 mRNA 0.48 10 54202674 54485213

Neighbor

gene id symbol gene type direction distance location
LOC110528966 LOC106582980 coding downstream 4462 54194715 ~ 54198212 (-)
LOC110528002 LOC106582983 coding downstream 22270 54166551 ~ 54180404 (-)
LOC110527124 LOC106582988 coding downstream 367345 53820460 ~ 53835329 (-)
LOC110527121 LOC106582947 coding downstream 427163 53774355 ~ 53775511 (-)
LOC110527999 LOC106582948 coding downstream 430794 53766066 ~ 53771880 (-)
LOC110528967 LOC106565901 coding upstream 322436 54807649 ~ 54961056 (-)
LOC110528005 LOC106582976 coding upstream 513228 54998441 ~ 55036498 (-)
LOC110528006 LOC106582975 coding upstream 562080 55047293 ~ 55052787 (-)
LOC110528008 atrap coding upstream 594771 55079890 ~ 55101228 (-)
LOC110528010 LOC106582973 coding upstream 621536 55106749 ~ 55132386 (-)
G623771 NA non-coding downstream 10753 54190835 ~ 54191921 (-)
G623767 NA non-coding downstream 15878 54185421 ~ 54186796 (-)
G623746 NA non-coding downstream 42729 54159656 ~ 54159945 (-)
G623716 NA non-coding downstream 51936 54150494 ~ 54150738 (-)
G624191 LOC100136012 non-coding upstream 16409 54501622 ~ 54501860 (-)
G624276 NA non-coding upstream 36717 54521930 ~ 54563391 (-)
G624326 NA non-coding upstream 96368 54581581 ~ 54581817 (-)
G624523 NA non-coding upstream 230168 54715381 ~ 54715671 (-)
G624783 NA non-coding upstream 331466 54816679 ~ 54816976 (-)
G622985 NA other downstream 879843 53305536 ~ 53322831 (-)
G619733 NA other downstream 3244134 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 3896518 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 4266393 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 4905426 49295040 ~ 49297305 (-)
G625426 NA other upstream 587266 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 679279 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 948243 55420466 ~ 55566988 (-)
G627254 NA other upstream 2206110 56691323 ~ 56696091 (-)
G627314 NA other upstream 2349372 56834350 ~ 56835092 (-)

Expression


Co-expression Network