LOC110528967 (LOC106565901)


Basic Information

Item Value
gene id LOC110528967
gene name LOC106565901
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 54807649 ~ 54961056 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983546.1
ggacATGCTCTATGAGGATGTGCACAGAGAAGAAGGGCCCCAGGGTGCAGGCAATGATTGGAGCTCCAGTGAGTTTGAGAGCTACGAAGAGCAGTCTGATGCCGAAAGCAAACTACCAACCCTCAGCAAGGTTCATCAGCTAATGAAGGCCGCCAGGAGTGGGACCAAGGATGGACAAGACCAGAATAGCCTTTATGCGGAAAGTATCCTTCCTGCACAAGAAGGACCACTCAGAGGATGTGGAGGATGACGCAGGGTACCTGGATGTGGCTGTGTCAGATGTGAAACATCCTCCTGCACAGCTGAGCCCTATGCCTGAGGGACTGAGCAGCCAGCagGTGGTCAGACGTCACATCCTGGGCTCCATCATTCAGAGTGAGCGCAGTTATCTTGAATCCCTCAGGAGAATCCTTGAGGAGTACCAGAGCCCCTTGCTGGAGGCGGACCCACACATCCTGAGCCCACGGAAGATCCGGCTTGTATTTTACCGCCTACGGGAGATCACTCAGTGTCACTCCATGTTCCAGATCGCACTGGCGTCACGTGTGGCTGAGTGGGACAGCAGTGAGAAGATTGGGGACCTATTTGTGGCCtcgTTTTCTAAGTCGATGGTGCTAGATGTTTATAGCGACTATGTCAATAACTTCACCAATGCCATGGCCCTCGTAAAAAAGGCATGCATGTCCAAACCAGCCTTCCTGGAATTCTTAAAGATGAAACAGGCGTCCAGTGTTGACCGGATCACCCTGTACGGCCTCATGGTGAAGCCCATCCAACGCTTTCCCCAGTTCATCCTATTACTGCAGGACATGCTGAAGAACACACCTAAGGGTCACGTAGACTGCCTGCCTCTGCAGCTGGCTCTGACTGAACTAGAAATGTTGGCCGATAAGCTGAATGAACAGAAGCGTGTGGCCGACCAAATAGCTGAGACTCAGCAGCTAGCACGCAGTGTCAGCGACCGCTCGCTCAGCAAGCAACTGAACTCAGACCAGGGGTCGCTGGTGCTTTGTGAGACACTGATTGAGACGGTGTATGGGGAGCGAGGCCAGGTCCTGAAGTCTAAGGAGCGCAAAGTCTTCCTCTTCAACGATATCCTCATCTGTGCCAACATCAACGTCAAGGGGCCCCTTGATATCAGCAGCCTAGTCCCTGTTGGTCCTAAGTACACCATGAAGTGGAGTGCCCCCCTGCTGCAGGTCCAGGTAGTGGAGGTGGGTCAGGAGGCCTCCCAGGAGACCCTGTTCCAACATGGCGGTGGCAAGCACCCTGGTAGTGCCTGTCCCCCAGGGAAAGTGATCCTGGGTCCTCCACGGCTTTACCAGGAACTCCTGGACCTGCAGCACGACTTGTCTGTGGTGGAGGAGGTCACACTACTGGTGGGAACACTACAGGGGACATACCAGAACCTGAACACGACTGTGGCCCAGGACTGGTGTCTAGCTCTACAGAGACTCATTCGGATCAAGGAGGATCAACTTCAGAGTGCCAACAAGTGCCGCTTACGCCTGCAGGTGCCTGGGAGACCAGACAAGTCGGGACGTCCCGTCAGCTTCATGGTGGTTTTCAACACGCCCAGCCCCCTCAGCAAGATCTCCTGGGTCAACCGGCTGCACCTGGCCCAGATTGCGCAGCGAGAGGAGAACACACCAGGATGGTTCTGTGCAGAGGATGAAGGGAATACCATGTCACCATTTTGGCCTTTACTGGCGTGCCGTGTGCCTGTCTTTACCACCAAATCCTCGGACAGGAAGTTTGAAGCTGCCCTTCACACTCCAGGACAGTTCTCTGCAGGGTGCACCTTGCTACCTCAAGGCTACCTCTGGGTGGCCAGCGGAGGAGATGTCACCCAGGGGCAGGTGGAGATATTCTCCCTGAACAGGCCCACACTGCGCCCAGTGAAGAGCCTCCAGGTGGGGGCCCCAGTGAGGTGTCTGGAGTATGTGCCTGAAACCAGACCCTCAGAGGAGGTGGAGGCTGTAGCCTTCAGGAGCTCTACTGGGGTGGGGAACACCATCTGTTTGGGACTAGATGATGGAAGCATCCTGGTGTATGGCAGTGTGAACACTGAGGCCCAGTGCCTGTTGAACCTGCGGAACCCTCATAGCTGCCCTGTTCTGTGCCTCAAACACTGCACCAACTTCCTGTTTGCTGGGCTCAGGGATGGAACCATGATGGTCTATAGAAGAAGTAATGGAGGTGAGTTGTGGGAGCCAGACTCCAGCAGGACTGTTATTGTGGGCCCAGAGCCGGTGAGGACACTTCTGGTACTGGAGGACTCTATGTGGGCCAGCTGTGCCAACTCTGTGACTATCATCGAGGGCTCCAGCCTTGCCACCCAGaGGTTTGAGGTACACCCAGACCCCATGGTGACCGTGGCCCATATGGTGCGGGCTGGGGGAGGAGTTTGGATGGCCTTTAGTGAGGGCTCTTCTATTCGCCTGTTCCACACTGAGACACTGGAGCATCTGCAGGAAATCAACATCTCCACGCGAGTATCTTTGCACAACCCAGGCCAGAAGAGCATGCGTGTCACCAGCCTGCTCATCTACCAGGGGCTGCTGTGGGTGGGCACTGTTCAGGGAATCATCATCATTCTGCCCGTGCCCAAACTGGAGGGCATCCCCAAAATAACAGGAAAGGGGATGATCTCTCTGAATGCCCACTGTGGTCCGGTGGACTTCCTGGTTGCCACGTCCAGCACCCTGTCCCCAGAGCTACTGAAGAGGGATTCTGTGGCGGACGGACCCGACTCTGCCTGCGGAGAGGAGGACCGCAGTTACTCCTCCTCCCAGGAGTCTCTGCCGCAATCAGGCTCCTcccaggggaggggggggggcaagggGCTGGGTGTGCTGCTACAGTACAGGTTGCGCTCCACTTCGGGGTTGCCAGGGCGACCGCTAACGGTGAGGGGCGATGAAGCATCGGACTCCTCCCTGGAGTCTTTGGAGCACAGCCTGGAGGACGGGTCAATCTATGAGTTCAGTGACAACCCAGAAATGTGGATGCAGGGACGCCCCTGTGAGCGGGATGGGGGGCGCAGGGACAGGATGATTTCGGCAGCGGTCATATCTGGGGGCAGGGGTTTCCACAGACTGAGGGAAGGGACAACGGAGCGGGCGGGGGTGGAGTCTTCAGAAACAACCCTGATGATGTGGGAACTACCACTGACAGTGTGATCTGGGTATCAACATTCAGGCAGTGTAATGCCAGGAACATGAACCCTGTGAAAGCAGGACATTAGTGCTGGCACAGAGCACAAGGCCAGGCTGATTACTCTTTGTGTTAGGGAGCTCCTGCATGCTCCATCTGAGGAGACCTGCTGGTGACCTGTGAGGCATGGGGCACTGCCATCCCACTGGTGGATCTGGATGACCCTGCTTACTCATTCTCAGCCACAGGCCCAGAGCCTTTCTTGTGACAGCTTAAACTGGTCCTCTCCGCTCCTTACAAGTATGGATATGCCGAAATCAAGCTTCATCAGAGCTGACAGTGCTTGCCTCACACAGATTTCTCTTCCACGGTTGACAGCCTTCCTTTGTGAGTAAGAATGGACCACATTGTTTTGAGAGTGACACTTTGTTGAATCTACCATGCTGCAATGCCGAAGATGGACCTCTTTTATCTGAAGCCATCTGTTTAGGGCTGAGAAAAGCTGAGAAACTACTGTAGGTGTTATTTAGTTATATTAGTTCAGAAAACCTCAAGCACTCCCTGGCAATGTGAAATATGTGAAATGTCTGTCAATGTGTCACAAGTGAATCTGTGCTTTTAGAAAAATGAAAGTGTGTTGGACGCTGACTGTGAGTCCTTAGTCGTCTGATTTTTTTTCTACTGCATAAATAGGTAGGTTATCTGAGATATGAGAGGGAAAAGAAGGCAATGTCTTTGTGTCCTGGTCTATCAGAGTTTAGTAGTTTTACATTTAAATGTTCCCATTTGTATTACTACAAAGTGCAAAATGCACACCATACATGTTTCTTGTGGATGACGATGATATTGTCCATTTTAAGTCAGTTAAAGCAAATACATATCCACACCAGCATGATAATATGCATTTAACCTACGTTACACATCAAAAGGCCTACTGAATTCAGTACAAAAGACAACGGCTACAACTGCTGCAGCCACCCAGACGTCATTAGTGGCTGTGTGGAGGCACCTAAAATGGAGAATGCTTTGAATGGGTTTTTGTGGCAATTTAACACACACAAACCTTTGATAAATCTATCCCCTAGTGTCTTTAAGCATTTTTATCTCCTTTCCTTCACTCCCTGTTTGAAGCCATTGCCATCGGTGGTTTGGTGTGCTAACAGAGACATGGTAATCTCCTgccctgtttctgtttctatttTATTCTGCTACAACGGAAATGGCCTACCTTTGACAATGTCTTTGAAAATAGTTGATTGACAAATTAATTGAGATGTTTGGCTATGAATGCATGGTGTTGAAGACTTAGTGTTATTTTGCGTTTCCTATGCTGCTGGATGGAAATGATGGTTGATTCCATATTTTGTCACCACTTCTGTAGAATATGTTGTAAAATTCCCTTTACATCTGAATACCCGAGTTCTCTTTTTCATCCCAGTAGAAGGTCCTGCTTTCTATAGTTctgaaacattattttattttacttcgTCTCCCCGGCATTAAAATACAGTTGCTTTGTTTAACAGGTCAGGGTCAACAGAAAACATAACTCAGTACAGTGTTGCGTTGTTTCTATAAAAATGTACAGTGCACATGAGAAAAGCTGTTGAAAGCGTACTGTACAAGACTTGTTTAGTGTTCCTATGATAAtactattctacaacactatgCTGGAGGTCACCCACATGTCAAGGTTATTTAGATGTAGCCAGAGTGTATGATTGAGTAACCTTTATGTAGTATACATCATTGGCGGtaggtgccgtttaagatgagggaggctaatctttttttttttaatgagaatggccttatttctattacaacaTATTGGAGGACTGTCATTCACAttctattcacccagctcaatgtaacattgataggtttaggctactacatgatactcaaatgttccctatacccatcatgaggttacaACCTAGCTTCCGAATTAAAGTTTACGACGTACatgtaggtgcacaggttgaGAGAGAAATTACATATTCAATATCGCCTTGCAGACTCTTgactgcatctagttgatctagggtgtaatcattagtccaacagttgcaaattagagtttctgttggacaaattcaggtacgtttatccccgtttcattctgtttgcttccatttaagttTTTCAAAAGAATCGGcaaaatgaatacacccctgaccaccgcaaacacagttcactttcatagcagccacatacaaacagcatgatcatttgcttgttgtataattccttctcgcatctacagtACGCATTCTCATCATCTTATACTTTCCCTTTCTCTTGTGGGATTCATATCTTAATGTGTATCTTAATGTGTGTCCGTCCTCTCATCCTTTCCCATCATTTTAGCCTCAATATTATTTTATCTATTCACACTCATAAATGGAGATTGTCTATTATAACTTTACACTCATActaaccatgctgtctgttcCTATAAAACAAAATTTGCAGCTACTAGAAGCTACCCATACTTTGACTCATTCACATAATTGAAAATAATGTGCCCTTATAATATTAtagactttgacacccctgtggTAGAGAAAGAGGCTTATGATAAGTCACTCGGTTTAACTTTTGAACATCATGAAATAATGTGACTCAGTTGTATACGTGGATAGAGTGAGAGGTCTAACATTAGATGTACAGTATAATGTTAAGTTACATTGCACATATAAAACAATGCTTAACTCCATTAAATGTCAATTCCAATTGCCCTTTGGTACGTTAATGaatacatgtttatatactgtACTTTAAAAGTGTTTCATAATTCATGTGTAATATGTCAATGTTAAATAAATACTTCATA

Function

NR:

description
rho guanine nucleotide exchange factor 10-like protein

GO: NA

KEGG:

id description
K16727 ARHGEF10; Rho guanine nucleotide exchange factor 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983546.1 True 5995 mRNA 0.48 22 54807649 54961056

Neighbor

gene id symbol gene type direction distance location
LOC110528004 LOC106582978 coding downstream 322436 54202674 ~ 54485213 (-)
LOC110528966 LOC106582980 coding downstream 609437 54194715 ~ 54198212 (-)
LOC110528002 LOC106582983 coding downstream 627245 54166551 ~ 54180404 (-)
LOC110527124 LOC106582988 coding downstream 972320 53820460 ~ 53835329 (-)
LOC110527121 LOC106582947 coding downstream 1032138 53774355 ~ 53775511 (-)
LOC110528005 LOC106582976 coding upstream 37385 54998441 ~ 55036498 (-)
LOC110528006 LOC106582975 coding upstream 86237 55047293 ~ 55052787 (-)
LOC110528008 atrap coding upstream 118928 55079890 ~ 55101228 (-)
LOC110528010 LOC106582973 coding upstream 145693 55106749 ~ 55132386 (-)
LOC110528009 LOC106582972 coding upstream 171739 55132795 ~ 55158158 (-)
G624523 NA non-coding downstream 91978 54715381 ~ 54715671 (-)
G624326 NA non-coding downstream 225832 54581581 ~ 54581817 (-)
G624276 NA non-coding downstream 244258 54521930 ~ 54563391 (-)
G624191 LOC100136012 non-coding downstream 305789 54501622 ~ 54501860 (-)
G624055 NA non-coding downstream 474738 54332549 ~ 54332911 (-)
G624889 NA non-coding upstream 7610 54968666 ~ 54968871 (-)
G624892 NA non-coding upstream 10670 54971726 ~ 54971982 (-)
G624778 NA non-coding upstream 13136 54974192 ~ 54974438 (-)
G625410 NA non-coding upstream 81399 55042455 ~ 55042874 (-)
G625404 NA non-coding upstream 83133 55044189 ~ 55046091 (-)
G622985 NA other downstream 1484818 53305536 ~ 53322831 (-)
G619733 NA other downstream 3849109 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 4501493 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 4871368 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 5510401 49295040 ~ 49297305 (-)
G625426 NA other upstream 111423 55072479 ~ 55075396 (-)
G625472 LOC106582968 other upstream 203436 55164492 ~ 55188756 (-)
LOC110528020 LOC106582955 other upstream 472400 55420466 ~ 55566988 (-)
G627254 NA other upstream 1730267 56691323 ~ 56696091 (-)
G627314 NA other upstream 1873529 56834350 ~ 56835092 (-)

Expression


Co-expression Network