LOC110528008 (atrap)


Basic Information

Item Value
gene id LOC110528008
gene name atrap
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55079890 ~ 55101228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110528008
ATTGATTTACAGAATGGTGACCAAGACCACCAACGGCAGATGCTCACGTGTTTTTTGCAAATATGAAATAAGGTGAAGAGAGGAGACGGATATTAAGGGTCACGTGAAAGGAGTCAGGCTGTTGTCCCATGGGTTGTGTTTCTTTCCCGGTTAGGAGGTATTGAGAAGTTTTGAGTGTGAAGTTTAACAATTATTTATGAAATCCTCAAAAACCGAAGGGGGCCTAACTACATCCGTATTGGCCTGAAATTATGGAAATTCCTGCCATAAACCTCAAGGCCATAGTACTGGTGCACTGGCTTCTGACCGTCTGGGGTTGTATGGCCTGGCTGCCCCCCTCTTATGCCTGGGGTAACTTCAGTGTCCTGGCTCTGGGTGTGTGGGCCATTGCTCAGAGGGACTCCATTGATGCTGTACTTATGTTTCTGATTGGTATTGCAGTGACGATACTGACAGACATCATCCATTTTGGGATCTACTACCTGCTGCCCGAGGGTCTGAGAGGAACCGGGACACATTCCGCTTCAGTGCGGGCATGGCAATCCTGGGCCTGCTACTCAAGCCTGTCTCCTGCTTCATCATCTACCAAATGTACAGAGAGCGTGGAGGAGATTACAACTTCAACTTTGCAGGCTTCCCCAGTGTAACACGAAACAGAGATGCTTACCAGTCCATTGACCAGCAGGACCAGACAACCAGCTCAGCCAACCCCTTCAACCAGGCCAGGGACACCAAGGCTGGAGCAACAAACTCCTACTGAGAGCCAGCACAGCACTCACTTTATTCTCATGGAAATGCATGTTTTCATGAAGGAATCCATGTTTTTGTTCAATTGTGTTTTTTCAAAGCCAATTCAGTCTTCCTTTCATATGGGTATCTGTGAACTGTAAGAGTCATTTGTATATTATTCTGTGCTTCATTCAATTCCTTACCAATAATGTCCTGATCTAAATACATACTGTCGTGGTAAAATATGACATGTACAGTATGCTTGATGCTCAGGGTAATGTCACATACACTGGCATATGGAGAGAACTTGAAATACCTCAGTCACTGCATAACAGTAAAATGAGAGCTGTGATTACATTTGAGATGTAATGGTACGAAAtcactaaccacgtttccatccacagtttttatgtgaGGAAAGTCCTACGGAAAACAAAGTGTCATGACATTTTTCTAAAGAACAACAGATAATGTGCTCTTTCtacactagctaggtttccatccgattggcgacagattttcttGGGAGTATTCCAAAATCCGCATAAAGAAAATctgtgcattttcccaccagtggtgttccCACCAAATGGACTGGTGGAAAATAAAAATCAGTGAGTGATGACATAGTGTATGGAGGTACATTTGTCCAAAACTTCAATTTCATTTTGCTATCAACCACGCTCCATTTTGGCTAGACTGCCCCATTTGCTTGCAgtgcttctttaaaaaaaaaaaaaaatgtttaaaaactttttttgttgttaaaaACACAAGTCTTCTTTTGCACTTTTGACCCCACAGCTGTGGGTGGGCTTTAGTGAGAGGTGTGGATGATGCTTCTCCATTGGTCAGACATTTTTTTGAGTGTCAGTTTGGCTACAACCAACTGTTCAGCCTTTCTTTCCAACACAAAGGAAGTCATTGCGTACACTTATGAAGAAGGACTGTGTGAtgatctcaggtaagcagcactagGTCTTCTTCCGTCCAACTTCTACATAGCTAGTAGTTCGCTCCTACGATTGTGTCGGTTCATAACATTAAGGTGTTTCCACAACCATTTCTCGCTTAAATCAATTTACtgacaaaaagatcccaccatgtagAAAGAACAAATGATCTGTCGACATTTATCAAATTGTACTGAAACTGCTTCCTTCACAGCTGTCGTGATTTGTTTTATATGGTATGACTTTATGTGCATAACTGGATGGAAAAGttatggtgggatctttttgtgtgtAAAATTAATTCTGCGAGAAATGGCTGCTGAAACGACTTTATGGTCAAATatttatataggcctaataaccatcatattgaagtaaacttggagtcaggTGATGATTTGGTGTGTGGACCGCTATGACTCGAGGAAACTGCAGTTTATTAGTCTACAGATGAGAGAAATTATGATTTGATTATATTTATTAGGATGAACCATTAGACAAAGCCAAttgcgacagctagtcttactgggatcCGACGTATAACAAAAAATACATAAATTAATTCATGGGGTTGTGAAAGTGCGAGTTGATGAGCTCGAGGGTCTTATTGTGGTGACATCCTTGTGGTGACATCCTTGTGCCATGTCTGAAGAAAGATCTTTGTTGTCATAATCAATGTTCCCCCTAAGCTCCGAGTATGTGTGGGAAGGCAACTCCCCCAGGACTGCCtcacagaagaaatatcagctcGACCTGCGCAGAAACGCACGAGATTAAACTTCACTGAACTATCTAGTTTTCCCTGTTAATACCTGTCAATGTTTCCCTTTACAGTAGGAACTGTGAttgaatcaacgcaatattatctactttcaatgcaacataatgaagcaaaaacaaactatgcaagacttTTTATGCAAAACTGTTGTAGTCATTATGTGTCAGAGTAGGATTCTGTTGCATTGACAGGCAAGACTCAggccgtactctacacagaccggtgcaccATAACCAATCAGCTGCAGtaagcctatatgcaaatagaccattgccatatatggatcagtgccattcactttgaactggactgtttttACAGAATGAGCTTGTCTTGAGATCAAACCGAGAGCTACATGTAGCACAGTGTACACGTtcgttcatatcctttgctagtgagttattagcccagtcaaatatcatttgtagtcagcaatgggggagtgattgcttcctacaagagcacaaaatgtgtgcacttctagacatctttgaaaaagAGAGTCTGGTAAATAGCTTTTTTTAGTCTTAaaagggcagtgttgtattttgagacaggcttgaataagctaagttgCCAATAGGCAGaaggtagcataatttgtctgattctcttaTATGGGAATAATGgtgcattttattttgttaagTAATTTCTTGCATCAAGCAACACAACTAAATGTAAGTCACTTTTCTGAAAGACAAGTAGATagacaggttaatgtcaagcccttcatgttttttctctcaaattatttaaactgtaggcctacattgaacaccataCTTTGattgctactgtaggctgaatgatagaacagctatttccatgttagcatgtcatgggatgcattttcatcaaatagccacagtagcctacttgaacCCTGTTATAACTGTAACTTAAAgatgggtacagcctcagtgttcacagtaaacgagTGCCAGAGGTTCCACAGAATTctcacaatgttcaagtttgcactcagcagacctgaaatttgcttgTGTACTTTTTGAAATCAGACTTGTATCTctgtctgaacacacagtatGAGATGCTTCCCACTGGGCAAagatgtcaattcaatgtcttttccatgttggttcaacgaaatttcattgaaatgacatggaaacaacgttgactcaaccagtgtgtgtgcccagtggatTGGTGCCTTCCATACCGTCTGGGTTAAAGCTATAATCTACAGTTGAAACAATAGCAAAGCGCCACCCTGCCTCtgatttggtaaaaagctgagggaccaagctttaatttcctgactgatgtcttcagatgttgcttcaaa
>TU711163
AGTCAGGCTGTTGTCCCATGGGTTGTGTTTCTTTCCCGGTTAGGAGGTATTGAGAAGTTTTGAGTGTGAAGTTTAACAATTATTTATGAAATCCTCAAAAACCGAAGGGGGCCTAACTACATCCGTATTGGCCTGAAATTATGGAAATTCCTGCCATAAACCTCAAGGCCATAGTACTGGTGCACTGGCTTCTGACCGTCTGTTTCTGATTGGTATTGCAGTGACGATACTGACAGACATCATCCATTTTGGGATCTACTACCTGCTGCCCGAGGGTCTGAGAGGAACCGGGACACATTCCGCTTCAGTGCGGGCATGGCAATCCTGGGCCTGCTACTCAAGCCTGTCTCCTGCTTCATCATCTACCAAATGTACAGAGAGCGTGGAGGAGATTACAACTTCAACTTTGCAGGCTTCCCCAGTGTAACACGAAACAGAGATGCTTACCAGTCCATTGACCAGCAGGACCAGACAACCAGCTCAGCCAACCCCTTCAACCAGGCCAGGGACACCAAGGCTGGAGCAACAAACTCCTACTGAGAGCCAGCACAGCACTCACTTTATTCTCATGGAAATGCATGTTTTCATGAAGGAATCCATGTTTTTGTTCAATTGTGTTTTTTCAAAGCCAATTCAGTCTTCCTTTCATATGGGTATCTGTGAACTGTAAGAGTCATTTGTATATTATTCTGTGCTTCATTCAATTCCTTACCAATAATGTCCTGATCTAAATACATACTGTCGTGGTAAAATATGACATGTACAGTATGCTTGATGCTCAGGGTAATGTCACATACACTGGCATATGGAGAGAACTTGAAATACCTCAGTCACTGCATAACAGTAAAATGAGAGCTGTGATTACATTTGAGATGTAATGGTACGAAAtcactaaccacgtttccatccacagtttttatgtgaGGAAAGTCCTACGGAAAACAAAGTGTCATGACATTTTTCTAAAGAACAACAGATAATGTGCTCTTTCtacactagctaggtttccatccgattggcgacagattttcttGGGAGTATTCCAAAATCCGCATAAAGAAAATctgtgcattttcccaccagtggtgttccCACCAAATGGACTGGTGGAAAATAAAAATCAGTGAGTGATGACATAGTGTATGGAGGTACATTTGTCCAAAACTTCAATTTCATTTTGCTATCAACCACGCTCCATTTTGGCTAGACTGCCCCATTTGCTTGCAgtgcttctttaaaaaaaaaaaaaaatgtttaaaaactttttttgttgttaaaaACACAAGTCTTCTTTTGCACTTTTGACCCCACAGCTGTGGGTGGGCTTTAGTGAGAGGTGTGGATGATGCTTCTCCATTGGTCAGACATTTTTTTGAGTGTCAGTTTGGCTACAACCAACTGTTCAGCCTTTCTTTCCAACACAAAGGAAGTCATTGCGTACACTTATGAAGAAGGACTGTGTGAtgatctcaggtaagcagcactagGTCTTCTTCCGTCCAACTTCTACATAGCTAGTAGTTCGCTCCTACGATTGTGTCGGTTCATAACATTAAGGTGTTTCCACAACCATTTCTCGCTTAAATCAATTTACtgacaaaaagatcccaccatgtagAAAGAACAAATGATCTGTCGACATTTATCAAATTGTACTGAAACTGCTTCCTTCACAGCTGTCGTGATTTGTTTTATATGGTATGACTTTATGTGCATAACTGGATGGAAAAGttatggtgggatctttttgtgtgtAAAATTAATTCTGCGAGAAATGGCTGCTGAAACGACTTTATGGTCAAATatttatataggcctaataaccatcatattgaagtaaacttggagtcaggTGATGATTTGGTGTGTGGACCGCTATGACTCGAGGAAACTGCAGTTTATTAGTCTACAGATGAGAGAAATTATGATTTGATTATATTTATTAGGATGAACCATTAGACAAAGCCAAttgcgacagctagtcttactgggatcCGACGTATAACAAAAAATACATAAATTAATTCATGGGGTTGTGAAAGTGCGAGTTGATGAGCTCGAGGGTCTTATTGTGGTGACATCCTTGTGGTGACATCCTTGTGCCATGTCTGAAGAAAGATCTTTGTTGTCATAATCAATGTTCCCCCTAAGCTCCGAGTATGTGTGGGAAGGCAACTCCCCCAGGACTGCCtcacagaagaaatatcagctcGACCTGCGCAGAAACGCACGAGATTAAACTTCACTGAACTATCTAGTTTTCCCTGTTAATACCTGTCAATGTTTCCCTTTACAGTAGGAACTGTGAttgaatcaacgcaatattatctactttcaatgcaacataatgaagcaaaaacaaactatgcaagacttTTTATGCAAAACTGTTGTAGTCATTATGTGTCAGAGTAGGATTCTGTTGCATTGACAGGCAAGACTCAggccgtactctacacagaccggtgcaccATAACCAATCAGCTGCAGtaagcctatatgcaaatagaccattgccatatatggatcagtgccattcactttgaactggactgtttttACAGAATGAGCTTGTCTTGAGATCAAACCGAGAGCTACATGTAGCACAGTGTACACGTtcgttcatatcctttgctagtgagttattagcccagtcaaatatcatttgtagtcagcaatgggggagtgattgcttcctacaagagcacaaaatgtgtgcacttctagacatctttgaaaaagAGAGTCTGGTAAATAGCTTTTTTTAGTCTTAaaagggcagtgttgtattttgagacaggcttgaataagctaagttgCCAATAGGCAGaaggtagcataatttgtctgattctcttaTATGGGAATAATGgtgcattttattttgttaagTAATTTCTTGCATCAAGCAACACAACTAAATGTAAGTCACTTTTCTGAAAGACAAGTAGATagacaggttaatgtcaagcccttcatgttttttctctcaaattatttaaactgtaggcctacattgaacaccataCTTTGattgctactgtaggctgaatgatagaacagctatttccatgttagcatgtcatgggatgcattttcatcaaatagccacagtagcctacttgaacCCTGTTATAACTGTAACTTAAAgatgggtacagcctcagtgttcacagtaaacgagTGCCAGAGGTTCCACAGAATTctcacaatgttcaagtttgcactcagcagacctgaaatttgcttgTGTACTTTTTGAAATCAGACTTGTATCTctgtctgaacacacagtatGAGATGCTTCCCACTGGGCAAagatgtcaattcaatgtcttttccatgttggttcaacgaaatttcattgaaatgacatggaaacaacgttgactcaaccagtgtgtgtgcccagtggatTGGTGCCTTCCATACCGTCTGGGTTAAAGCTATAATCTACAGTTGAAACAATAGCAAAGCGCCACCCTGCCTCtgatttggtaaaaagctgagggaccaagctttaatttcctgactgatgtcttcagatgttgcttcaaaataacCACAATTgttctgcctcatgatgccatctattttgtgaagtgcaccagtccctcctgcatcaaagcaccccagaacatgatgctgccac

Function

NR:

description
Type-1 angiotensin II receptor-associated protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110528008 False 3778 mRNA 0.41 5 55079984 55101228
TU711163 True 3652 lncRNA 0.41 4 55079890 55101117

Neighbor

gene id symbol gene type direction distance location
LOC110528006 LOC106582975 coding downstream 27197 55047293 ~ 55052787 (-)
LOC110528005 LOC106582976 coding downstream 43486 54998441 ~ 55036498 (-)
LOC110528967 LOC106565901 coding downstream 118928 54807649 ~ 54961056 (-)
LOC110528004 LOC106582978 coding downstream 594771 54202674 ~ 54485213 (-)
LOC110528966 LOC106582980 coding downstream 881772 54194715 ~ 54198212 (-)
LOC110528010 LOC106582973 coding upstream 5521 55106749 ~ 55132386 (-)
LOC110528009 LOC106582972 coding upstream 31567 55132795 ~ 55158158 (-)
LOC110528015 NA coding upstream 59694 55160922 ~ 55162246 (-)
LOC110528968 LOC106582963 coding upstream 94626 55195854 ~ 55196454 (-)
LOC110528016 LOC106582964 coding upstream 100911 55202139 ~ 55204250 (-)
G625404 NA non-coding downstream 33893 55044189 ~ 55046091 (-)
G625410 NA non-coding downstream 37110 55042455 ~ 55042874 (-)
G624778 NA non-coding downstream 105546 54974192 ~ 54974438 (-)
G624892 NA non-coding downstream 108002 54971726 ~ 54971982 (-)
G624889 NA non-coding downstream 111113 54968666 ~ 54968871 (-)
G625477 NA non-coding upstream 69166 55170394 ~ 55170660 (-)
G625472 LOC106582968 non-coding upstream 69834 55164492 ~ 55188756 (-)
LOC110528018 LOC106582958 non-coding upstream 127372 55228600 ~ 55309126 (-)
G625531 LOC106582960 non-coding upstream 212276 55313504 ~ 55314949 (-)
G625426 NA other downstream 4588 55072479 ~ 55075396 (-)
G622985 NA other downstream 1757153 53305536 ~ 53322831 (-)
G619733 NA other downstream 4121444 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 4773828 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 5143703 49660022 ~ 49936575 (-)
LOC110528020 LOC106582955 other upstream 332228 55420466 ~ 55566988 (-)
G627254 NA other upstream 1590095 56691323 ~ 56696091 (-)
G627314 NA other upstream 1733357 56834350 ~ 56835092 (-)
G627323 NA other upstream 1745734 56846962 ~ 56852301 (-)

Expression


Co-expression Network