LOC110528015


Basic Information

Item Value
gene id LOC110528015
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55160922 ~ 55162246 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474180.2
ATATGGAGATTTGGGACTATATATAGGAGAGGTGAAGCCAGTAGAAATAACTCTACACAGAGACCTCTACAGCACAGGGATCCAGCCATGGAGCCTACAATCACTTCAGCAATGACCTACTATAAGGACCACCTGACTGACCAAAAAGAAAGACAGTGGTGGGGAAGTTATTCAGAGATCGTATCAACAGCAGCATTGAGCGGCTCAAGTCTCTCCTGGGTCCAGAGATCCTCAATCAGCAACACAACTTCCAGTTGGAGAAAGCAGACATCCTGGAAATGAGTTTGCTTCCTGAGAGGACGGCAACACATCCAGCGAGTGAGCTCCTCCTTATGCTCAGCACCTGTCAATCAGGGTTACTCCAGATGTGTCCAAGAGATTGTACACGTCTTGTCCAAGGATGAGGTGAAGACACATCCCAGAGAAGACTGCTGAGCCACTTCCAGATACTTCAGCCATCCTCTGATAAGAACAGAAGGGAGAGTGTCCTGCCTCAGGCAACAGCAAAGAGAAGAGTCCAGTCAGTAGCGTCCATTGGAGGCCCTGGTAGAGTCCTACAGTCTGGAGCTCCACTCATAGAGAAAACCTATGGATCACATTGGTCTAAGAATAATGGCATTATTGTCATGGACACGAATGAAAATAGGAAGAGATCTTCTTTATGTTCTGCTCATGCAGGAGTTTCTAAAAGTCTTGCTCTGATTGAGACTGTTCATTTCAATTTTACTGAAGAAGTTTTTCTAAGAAAATGATCCATACTATGAAAACTACATTTTTGTAGTGTGATGGTATTATATAATGAATAACCTTTATGTTTTCTAAAGTGTGTTGATTATGTTGAATGGTTGTTCATGAGCAACATCAACTTTAAAAGTCCTCTATGACTTTTACGCAAACTTTTGGTGATTGTCTAATGATCTGTTTTAAGGTCAAATCTTAGAGAATAAGCAATTGTTTCCACTACATTTGTGTACTGATATAGTTTTATTTACATTGTATTGAGCATCTTATATGAAACATGTATTAGTTATCCATTTGATAATGATGGACCTAAGCTACAGCATCACTGTTCCTCCATGATGATTATTTACCCAAGCTGGGTATTATACCTGTAATCATCACTCTGTGATAAGCAATACTCTGATTTAAGATCAAACTTGTCAATTTTATTTCATGATGTTTTGTGATATGATAAAACATGATAAAACATTA
>TU711235
GAGACCTCTACAGCACAGGGATCCAGCCATGGAGCCTACAATCACTTCAGCAATGACCTACTATAAGGACCACCTGACTGACCAAAAAGACAGTGGTGGGGAAGTTATTCAGAGATCGTATCAACAGCAGCATTGAGCGGCTCAAGTCTCTCCTGGGTCCAGAGATCCTCAATCAGCAACACAACTTCCAGTTGGAGAAAGCAGACATCCTGGAAATGAGTTTGCTTCCTGAGAGGACGGCAACACATCCAGCGAGTGAGCTCCTCCTTATGCTCAGCACCTGTCAATCAGGGTTACTCCAGATGTGTCCAAGAGATTGTACACGTCTTGTCCAAGGATGAGGTGAAGACACATCCCAGAGAAGACTGCTGAGCCACTTCCAGATACTTCAGCCATCCTCTGATAAGAACAGAAGGGAGAGTGTCCTGCCTCAGGCAACAGCAAAGAGAAGAGTCCAGTCAGTAGCGTCCATTGGAGGCCCTGGTAGAGTCCTACAGTCTGGAGCTCCACTCATAGAGAAAACCTATGGATCACATTGGTCTAAGAATAATGGCATTATTGTCATGGACACGAATGAAAATAGGAAGAGATCTTCTTTATGTTCTGCTCATGCAGGAGTTTCTAAAAGTCTTGCTCTGATTGAGACTGTTCATTTCAATTTTACTGAAGAAGTTTTTCTAAGAAAATGATCCATACTATGAAAACTACATTTTTGTAGTGTGATGGTATTATATAATGAATAACCTTTATGTTTTCTAAAGTGTGTTGATTATGTTGAATGGTTGTTCATGAGCAACATCAACTTTAAAAGTCCTCTATGACTTTTACGCAAACTTTTGGTGATTGTCTAATGATCTGTTTTAAGGTCAAATCTTAGAGAATAAGCAATTGTTTCCACTACATTTGTGTACTGATATAGTTTTATTTACATTGTATTGAGCATCTTATATGAAACATGTATTAGTTATCCATTTGATAATGATGGACCTAAGCTACAGCATCACTGTTCCTCCATGATGATTATTTACCCAAGCTGGGTATTATACCTGTAATCATCACTCTGTGA
>TU711233
GAGACCTCTACAGCACAGGGATCCAGCCATGGAGCCTACAATCACTTCAGCAATGACCTACTATAAGGACCACCTGACTGACCAAAAAGAAAGACAGTGGTGGGGAAGTTATTCAGAGATCGTATCAACAGCAGCATTGAGCGGCTCAAGTCTCTCCTGGGTCCAGAGATCCTCAATCAGCAACACAACTTCCAGTTGGAGAAAGCAGACATCCTGGAAATGAGTTTGCTTCCTGAGAGGACGGCAACACATCCAGCGAGTGAGCTCCTCCTTATGCTCAGCACCTGTCAATCAGGGTTACTCCAGATGTGTCCAAGAGATTGTACACGTCTTGTCCAAGGATGAGGTGAAGACACATCCCAGAGAAGACTGCTGAGCCACTTCCAGATACTTCAGCCATCCTCTGATAAGAACAGAAGGGAGAGTGTCCTGCCTCAGGCAACAGCAAAGAGAAGAGTCCAGTCAGTAGCGTCCATTGGAGGCCCTGGTAGAGTCCTACAGTCTGGAGCTCCACTCATAGAGAAA

Function

NR:

description
transcription factor HES-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474180.2 False 1212 mRNA 0.40 2 55160922 55162246
TU711235 False 1066 lncRNA 0.41 2 55161005 55162187
TU711233 True 525 lncRNA 0.50 2 55161550 55162187

Neighbor

gene id symbol gene type direction distance location
LOC110528009 LOC106582972 coding downstream 2764 55132795 ~ 55158158 (-)
LOC110528010 LOC106582973 coding downstream 28536 55106749 ~ 55132386 (-)
LOC110528008 atrap coding downstream 59694 55079890 ~ 55101228 (-)
LOC110528006 LOC106582975 coding downstream 108135 55047293 ~ 55052787 (-)
LOC110528005 LOC106582976 coding downstream 124424 54998441 ~ 55036498 (-)
LOC110528968 LOC106582963 coding upstream 33608 55195854 ~ 55196454 (-)
LOC110528016 LOC106582964 coding upstream 39893 55202139 ~ 55204250 (-)
LOC110528017 LOC106582961 coding upstream 47336 55209582 ~ 55225927 (-)
LOC110528018 LOC106582958 coding upstream 67475 55228600 ~ 55309126 (-)
LOC118965300 NA coding upstream 128281 55290527 ~ 55292821 (-)
G625414 NA non-coding downstream 62645 55097743 ~ 55098277 (-)
G625404 NA non-coding downstream 114831 55044189 ~ 55046091 (-)
G625410 NA non-coding downstream 118048 55042455 ~ 55042874 (-)
G624778 NA non-coding downstream 186484 54974192 ~ 54974438 (-)
G625477 NA non-coding upstream 8148 55170394 ~ 55170660 (-)
G625472 LOC106582968 non-coding upstream 8816 55164492 ~ 55188756 (-)
G625531 LOC106582960 non-coding upstream 151258 55313504 ~ 55314949 (-)
G625560 NA non-coding upstream 197578 55359824 ~ 55360081 (-)
G625426 NA other downstream 85526 55072479 ~ 55075396 (-)
G622985 NA other downstream 1838091 53305536 ~ 53322831 (-)
G619733 NA other downstream 4202382 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 4854766 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 5224641 49660022 ~ 49936575 (-)
LOC110528020 LOC106582955 other upstream 271210 55420466 ~ 55566988 (-)
G627254 NA other upstream 1529077 56691323 ~ 56696091 (-)
G627314 NA other upstream 1672339 56834350 ~ 56835092 (-)
G627323 NA other upstream 1684716 56846962 ~ 56852301 (-)

Expression


Co-expression Network