LOC110527126 (LOC106582962)


Basic Information

Item Value
gene id LOC110527126
gene name LOC106582962
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55207615 ~ 55208708 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608279.2
GTGTATAAATACGGAAGCTCTGTAGAGGTGGTCAAACCCCACTTCTAACATCCGCAACTATCTTTACTAAGAGCAAACATCAACTGACCAACAGCAATGGCTCCTGTCAATATGTGCAACATTGTGAGGACCACGAAAGATAAAATCAAACTGAGAAAACCAGTGGTCGAGAAGATGCGCCGAGACCGCATCAACAGCAGCATCGAACAGCTCAAGTCACTCCTCAAAACCGAACTTCAAGCACACCAACCCAACTCTAAACTGGAGAAGGCTGACATTCTCGAGACAGCTGTGTTTTACCTGAAAGACAACAGCACGCGCCCTGCTTCTTCATTCAACGTAGCGTCACCCGTCCAGAGCTACGCGGAGGGATTCACCCGCTGCCTGGAGGAGACGCTGCGTTTCCTCTCAGCGCACAACCAGCCGACTGACTCGCAACATAAGCTTGTCGATCACTTCCATCGGGTACAGAAACTTGGTGAGAGAGTCGCGCTGAGTCCAAACCGGGCGACGGTCCCTCACAAAAGCAGAACTCCGAAATGTGTCACCGCAGGTGGAAGAGGGCCTTTGTGGAGACCCTGGTGATGCGCATAGCCTATTTCGAGACGTTAAATAATGAGACTTTCGATGTCAAAACCAGATAATATGTTGGTCTAGCTGCACGACCAAGTATGATCTCTTGTAGGAAATAATTATTCCCTTTACAATTTATCTTTTGTTCGTAAAAGTtgaaattattgttattattctGTTTAGAATGTAAATTCCATATCCTGTATTGTGCTATTGCGCATATATTTGTGACTTCACAATTGTGAAGTAAACTATTTTTTACATATTGTAAAATATATTCAAGTAATATCTTGGTGTATTTCTGGGAAAATAACTCAGCCATATGTTGCTGAATTGTAATGTGTCCTGAAACAAGCTGTGATTGGAACATTGATTATCACATTGATATGGAAATATTCCCCAATAAATAAAA
>TU710810
AACATCCGCAACTATCTTTACTAAGAGCAAACATCAACTGACCAACAGCAATGGCTCCTGTCAATATGTGCAACATTGTGAGGACCACGAAAGATAAAATCAAACTGAGAAAACCAGTGGTCGAGAAGATGCGCCGAGACCGCATCAACAGCAGCATCGAACAGCTCAAGTCACTCCTCAAAACCGAACTTCAAGCACACCAACCCAACTCTAAACTGGAGAAGGCTGACATTCTCGAGACAGCTGTGTTTTACCTGAAAGACAACAGCACGCGCCCTGCTTCTTCATTCAACGTAGCGTCACCCGTCCAGAGCTACGCGGAGGGATTCACCCGCTGCCTGGAGGAGACGCTGCGTTTCCTCTCAGCGCACAACCAGCCGACTGACTCGCAACATAAGCTTGTCGATCACTTCCATCGGGTACAGAAACTTGGTGAGAGAGTCGCGCTGAGTCCAAACCGGGCGACGGTCCCTCACAAAAGCAGAACTCCGAAA

Function

NR:

description
transcription factor HES-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608279.2 False 985 mRNA 0.43 2 55207615 55208708
TU710810 True 494 TUCP 0.51 2 55207661 55208263
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110528013 LOC106582964 coding upstream 8547 55197770 ~ 55199068 (+)
LOC110528014 NA coding upstream 12553 55193493 ~ 55195062 (+)
LOC118965383 NA coding upstream 27821 55178707 ~ 55179794 (+)
LOC110528011 LOC106565955 coding upstream 35415 55170794 ~ 55172200 (+)
LOC110528012 NA coding upstream 41866 55164188 ~ 55165749 (+)
LOC110528019 LOC106582960 coding downstream 104740 55313448 ~ 55315903 (+)
LOC110528970 LOC106582957 coding downstream 124389 55333097 ~ 55416079 (+)
LOC110528022 LOC106583050 coding downstream 296698 55505406 ~ 55508166 (+)
LOC110528024 LOC106583050 coding downstream 502927 55711635 ~ 55714713 (+)
LOC110528971 LOC106583048 coding downstream 583583 55792291 ~ 55798284 (+)
G625042 NA non-coding upstream 35901 55164275 ~ 55171714 (+)
G625050 NA non-coding upstream 36969 55170352 ~ 55170646 (+)
G624999 NA non-coding upstream 103730 55103587 ~ 55103885 (+)
G624965 NA non-coding upstream 154525 55052712 ~ 55053090 (+)
G625085 NA non-coding downstream 19969 55228677 ~ 55230776 (+)
G625086 NA non-coding downstream 25432 55234140 ~ 55234456 (+)
G625087 NA non-coding downstream 26032 55234740 ~ 55235046 (+)
G625088 NA non-coding downstream 26401 55235109 ~ 55235333 (+)
G625089 NA non-coding downstream 26647 55235355 ~ 55235614 (+)
LOC110528007 LOC106582974 other upstream 135228 55053185 ~ 55074095 (+)
G624962 LOC106582975 other upstream 154927 55047296 ~ 55052688 (+)
G624628 NA other upstream 383416 54823637 ~ 54824199 (+)
G623180 NA other upstream 1453496 53753906 ~ 53754119 (+)
G621695 LOC106582949 other upstream 2714375 52491168 ~ 52493240 (+)
G625038 NA other downstream 2997 55211705 ~ 55213911 (+)
G625222 NA other downstream 263760 55472468 ~ 55472843 (+)
G626004 NA other downstream 862346 56071054 ~ 56078929 (+)
G626417 NA other downstream 1273686 56482394 ~ 56485304 (+)

Expression

LOC110527126(LOC106582962) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110527126(LOC106582962) Expression in each Bioproject

Bar chart with 15 bars.
LOC110527126(LOC106582962) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002178 NA coding CM030136.1 CM030136.1 6258047 ~ 6262305 (-)