LOC110528970 (LOC106582957)


Basic Information

Item Value
gene id LOC110528970
gene name LOC106582957
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55333097 ~ 55416079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983552.1
CCATTGCGCACGCATGTGCGTTCAACATCTGCGTGTGGTAGGCTAAACCAGTAAGGCTCGACATCCAAGCGCCACTTTCTACGGGATGTATGGCTGCATCTCTTTTGGAAGGTGTGGGATTGACTCTGCTCCTCACTCTGTTTGAAGTGTAACGGTGATGCGTGTGTTCATTTTTTTCTCCAGTAAATTGGCTACGGGTTTTGCTTTCGCTAAAACATGCGTCAATGTCGCTACATTTCTACGGATTAATGCATACGCAAAATATTGATACGTTCAACACAACGTGAATATGGATTTTATCTTTGTTTCAATACTTTTTATATTTATCGACGCGATTTACGCAGTGTCCCGCTATGGAAATCTCCAACCATACATGCCCAACGTGTGTGCAGAGCGGGAAGTGATGCTCGTTGCCCAAAGGCAGCCCTGTGTGCAGGCCTTCACACGCATGGTCAAGGTCTGGAAGCAAGGCTGCCTAGGACAGAACTGGTGCATGGGATACGAGAGAAGGACAGCGTATTACACAGCATACAGACACGTCTACAGACAAGACTACCGGACGGTTTACAAGTGCTGTCCTGGATGGTCTCAACTCAACGGAGAGGCTGGCTGCTTGTATCCGGTGTGCAGCTACGGCGTGTGCTTCAACGGGGGCCAGTGTCGACAGGGATCCCGCTCCAGCTCCCAGCTCTGTGATTGTCCTGCTGGCTTCAATGGGCCCAGTTGCCAGTATGATGTAAATGAGTGTGAGGAGACTAACGGCGGTTGTGAGGCTCTGTGCTGCAACACCATCGGCAGCTTCTACTGCAAGTGTCCTTCTGGTGAGCAGGTGAAGGACGACGGCAGGACCTGCCAAGATATTGATGAGTGCCAGGTCCACAACGGGGGCTGCCAGCACGGTTGTGTGAACTCCAGGGGCTCCTATCACTGTGAATGTAACCCAGGCTCTCGACTCCATGTGGATGGACGCACCTGCATCGCTGTCCAGTCATGTGGAATCAGTAATGGAGGATGTGAGCATTTCTGTGTACAGCAGTCCCCTGCTTCCTTCCGCTGCCGCTGTAGAGACCAATATGTGCTGGCTGAAGATGGCAAGCACTGCAAATTGGAGAATCCATGTCTAGATAAGAATGGTGGCTGCCAGCATGACTGTCTTGTTGATCGTGGCAAGGCCCACTGTGAATGTAGAAATGGGTACAAGCTGGCAGAGGACAGGAAGACTTGTGAGGATATTGATGAGTGTGAGTCGGAGCAGACGGGCTGTGCTCATGGCTGCCACAACATCCCGGGCTCCTTCgcctgtgtgtgtgacactgcCTACGAGCTGGGAGCAGACGGACGCCAGTGCTACCGAATTGAGATGGAGATCGTCAACAGCTGTGAGAGCAACAACGGAGGCTGCTCCCATCACTGCCAGCACTCCACCGGTGGCCCTGTCTGTAGCTGTAACCAGGGTTACCGACTGGAGGAGGACCTCAAGACCTGTGTTGACCTGGACGAGTGTGGAGAGGGAAGCTCCTGCTGCGAGCAGGACTGTACCAACTACCCTGGGGGCTATGAGTGCTACTGCACAGCGGGGTACCGCCTCAACTCAGACGGATGTAGCTGTGATGatGTGGATGAATGTCTGGCGGCTAACAGTGGCTGTGATCACATGTGCCAGAACACCGCCGGCTCCTTCCAGTGTTTCTGCCGCCGAGGCTTTCGTCTGGACGAGGACCGACACTCCTGTGAACCGCTGGAGAATACAGTTGAGGCCCTGTATAGTGGGGGCCAGGATGCCGTGGGGCCCCTGCCTCAGCTCACCCTGCTGCAGGACTACAACCAGCCCCTGGAGCGCTATGATGACTATGAGGATGACGACACTGGAGAGCTGCTGGCTGAGAGCATGTTGGCAGAGAAATTTGTGTGTCTGAACAACACGTTTGGCCATGACTGCAGTCTGACCTGTGATGACTGCTCtaatggagggctgtgtggcccagggagagatggatgtCACTGTCCCGATGGATGGACAGGCCTCATTTGCAACCAGACTTGTCCTGAAGGATCCTTTGGCAAGAACTGCTCATTTCCCTGTAAGTGTATGAACGGAGCCACCTGTGATCCTGTTAATGGGAACTGTCGCTGCCCACCTGGCGTCAGTGGAGACATGTGCCAGGATGGCTGTCCTAAGGGCTTCTATGGAAAACAGTGCAATAAGAAGTGTAACTGTGCCTGTAACGGGCGCTGCCACCGCACCTACGGAGCCTGTCTGTGTGACCCTGGACTCTACGGGAGGTTCTGCCATCTACCATGTCCCAAGTGGGCCTTTGGACCGGGCTGTTCAGAGGAGTGTCATTGTGTCCAACAGAACACTCTAGAGTGTCACCGTCGCCATGGCACCTGCATCTGCAAGCCCGGTTGGCAAGGCAATGCATGCAGGGAAGAGTGTGACCCAGGCACGTTTGGCCCAGGCTGTGAGAACAAGTGTGAGTGCCCGCTTGGACTGTCTTGTGATCATGTGACTGGGAAGTGCCAACGTCTGTGCCCGGCTGGTCTCCGTGGAGACACCTGTGATCAAGccTGTCCAGAGGGGAGGTTTGGGCCAGGCTGCCCTCAGGCCTGTGACTGCTCAGGGGCTCCATGTGACAGAGTGAGCGGCCAGTGTCAGTGTCCTGCTGGAACATCAGGAAAACGCTGTGAGAATTTGTGTGTGGAGGGATCCTGGGGCGCGGGTTGCCACGAGGCCTGTCCAGTCTGTGAGAATGGAGGAGTGTGTGACAAACACAACGGAAGCTGTTCCTGTCCTCCTGGGTACATGGGCAGGCTCTGTCAGAACTCATGTCCTTCAGGGCGGTTTGGTGTTGGATGCCAGCTGCGCTGCGTGTGTGAAAACAGTGGGCGCTGCCACCCTGTCACGGGCCGTTGTACTTGTAACCCTGGCTGGGCAGGACATAACTGCAGGAAAGCCTGTGACTCTGGGCGCTGGGGAGTGGACTGTGCTGAGAAATGTGACTGTAAGAATGGGGATGGGAGCTGTGACGCAGTGACGGGCCAGTGTAACTGTGAGGCCGGCTACACAGGGACACAATGCCATGAAGAGTGTCCAGTGGGGTCTTTCGGTCTGGGCTGTCGGCATCACTGCCAGTGTGACAACAAGGGGTCATGTGACCATGTCAGTGGAGCATGCACCTGCCTGGTGGGCTGGACTGGAACCTTCTGTGAGAAATccTGTCCCCAGGGCTTCTATGGGGCAGACTGCCAGGAGAAGTgtgtctgtctgaatggaggTCACTGCAACCATGTCACTGGGACGTGTGTGTGTCCAGCTGGTTGGATCGGTCCCACCTGCAAACTGACATGCCCGGCTGGTTTCTATGGGGAGGGCTGTAACCAAACCTGCGGTTGCCATAATAATGGCAACTGCCACCCGGCGAACGGGCAGTGTGTCTGTACACCTGGCTGGACAGGGCCCAGCTGCTCACAGGAATGCCCAGTGGGCTTCTATGGGGCGGACTGCAGTCAGCACTGCCTGTGTCAGAATGGAGCCAGATGTGACCGAATCAGTGGGCAATGTACCTGTGCCAACGGGTGGATGGGCGCAGCCTGCGGGCTAGAGTGTGTATCAGGGCGGTTCGGGGCCGACTGCCAGCAGCAGTGTCAGTGTGAGAATGGGGGCCACTGCGACAGACAGACGGGCCAGTGCAACTGTGGTCCTGGCTGGGTCGGAGAGCGCTGTGAAAAAGCCTGTGGGTCAGGTCTGTTTGGAGCTGGCTGTGAGGAGAGTTGTCAGTGTGAGCATATAGCCCCCTGTCACCACGTTACCGGGCACTGCCTCTGTCCACCAGGTTGGAGGGGACCCCACTGTGATAAAGCCTGTTTATCTGGAACCTATGGCAAGGGCTGTGTGCAACGCTGCACCTGTCCCCAGGGTACTTCCTGTCACCATGTCTCTGGGGAGTGTGGCTGTCCCCCTGGACTCACTGGCAATGGCTGTGAACAGAcctgtctgtcaggGACACATGGACTCAACTGTAACCAGGTGTGCCAGTGTTCTGAGACCAACCAGCTCTGCCACCCAGTGACTGGGCTGTGTTACTGCGCACCAGGCTTCCAAGGTCCTAAATGTAACCAGGAGTGTCAGAAAGGATGGTATGGTCCCGACTGTGAGCGAGAGTGCCAGTGTCAGAACAGTGGGAAGTGCAGGTCCACCTCTGGCACCTGTGAATGCACAGCAGGGTTCATCGGAGCACACTGCAACATCACGTGCCCAGCTGGTCGTTATGGGCAGGACTGTGCCGGCGTGACACTGTGTGGAGAGGGGGCACAGAATGATCCTGTCAATGGTAGATGTCACTGCAGCCCTGGgcgaagaggagaggactgtggaCAAGGCTGTGCTCCTGGTTGGTTTGGAGAGGACTGTGCTATCCTCTGTAACTGCAGTAACGGAGGACTGTGTGACTCTGTCTCTGGAAGATGTACCTGTggtctgggctggactggggctCACTGTGACACAGAATGTCCTCCGGGGACATTTGGAGGTAACTGCCAGCTGAAGTGTGACTGCTGGAACAATGGCACCTGTGACAGGGTGACTGGAACCTGCCAGTGTGGTCCAGGTTACTACGGACATCAGTGTGAACATGCGTGCCCCCCTGGCCTCCATGGCCCTCTGTGCCAACTCCAGTGTACCTGTCTGAACAAGGCGTCCTGCAACCCCTCCACTGGGTtctgtgtctgtcctccaggGTACCATGGCTCCCGTTGTCACAGAGAGTGTCAACAGGGCACGTTTGGTGTGAACTGTGCCAAGTCATGTGACTGTGAGGAGGGCACGCCCTGTGACCCTGTGAGTGGAAGGTGTCTGTGCACCTCAGGCAAGACTGGACCCAGGTGTGACACTGCCTGCAAAGCAAACCGCTATGGGCCAGACTGcacagagagctgtgtgtgttacAACGCGGCTCACTGTGACCATCGGAACGGCCGCTGCACATGTCTCAACAGCTGGATCGGACTCACCTGTCAGGAAGgtgGGCCTCCACGCCTCCCCTACAGAAGCAGGAGGGAGGACAACGCACATCTAGACAATGCGTTATAGTGCCCCCTTTTGGCCGGAGGCTCCAATCACCAATGAGCCTCCGACGGTAAGAGGCTGGGGAAGCAGCACAAGCTTCGCTGAAGCCGAACTGAATTAAAAGGTTGGATATTATTATTTCAGACATACACACCCCAACGGGACAGGATACTGCTGCACCCACAGGAGCTGGATGAGACATGGAGAAATGGACTCTAAGGAGAAATGTTCTCAGTGTTTGCTCTAGGGTGGAtaatgctttggtgtgtgtgtgtatgctgtaaACTGTGCAGGGCTTTCATTGTTTGTGTTCATGTGCATACTGTATACATGTGCATCTCCCACTCAGGCATGGCCTAACTCATCAGTGATGAGGTACGGTATGTTGTGACCCCCTTTCTGGTAGTTAGAGGGCAGCCAGTGTTTACCAGGACTAGGAGCTCTATTCATTGCGTGTCGCTGAAGCGTTCAATTTAAAGGTAATGACCTATTGGCTGACATCTGCAGCGTTTACCTAGCATGCAGTGTCTGCTAAagcaggaacattgcctttaaattcaaATCAAGCTGTAATGCTGAATTtccgcgatacggattgaatggAGCCCGAGATCTCCCCACTACAGCCTCCTCTGCACACTCCCCCCTGGACAAACCACGCGGGATATAGATGTGTTTGGCGACAGTTGCTGAACGTCCAACACTAACACTCATTTTTTATTGCAGAGATTCACCGACTCACTATTGTACTTGATATTTGTTTTGTATACTATGCAATGCTATACTATTGTATGTATTTGTTTTGTATACTTGGCAATTCTGTAGTGTTTTATGCTTTGGTTTTTGTCATTTACCCCAGAAATGTTCATGGAATATGTGGATAAACAGTATACATGTGGCATTATTATACAAATCCCATCACTTCTACATCACATACTGTAAATTATTCATTATTTGAATCTGTCCTTATGAATGAGCCATCAGAGCCAACATAACCCAGGTATCTATGCTTTTGGAAAGTAGTGTGAGGTGAATCCTATCAGACAATGCAAAGTGATTTGAGCACCTGAAAAAACGCTTTCAATGATATTTCCAATCCAGTATAATATTGTGATGTCTAATTGCAGTGAATACCATACAGTTCTGTTTGATATTCTGTACTTTATATGAAGCGACTTGTTATAAAAATGTTGGTGCTATGGCGCTTTAAATCCACTATATGTTAACCAGaagacagtatattatctacataTTGGTCAGTACATTTTTGTTTACCAAAGTATGTTTGCGTGGGCGATTCTGATTCATATCCTCAAAGTTTAGAGTTCACCCCATTGGATTGCACAATGATTCAGGAGACACAATATAACTTGAGCAGACAGTGGGCTCAGCCCAGTCATGGTAAACAGTACCTTTTTGTTTTTTGTGTATAAAGTGCTCtttacatatatttatattttatacagtatattgtatacaGTTCAAGATAATGCAATAGGTAAGTGTATTCTGTCTATGACTGGAGTCAAGAGGATGTTCTAATCGGGACACCTAGTAAATAACCCAGAAAATATCAAAAACAATCAATGAATGAAAAAGTCAAACACAGGGAACTGTTTTTACATTCTTATTTTTTCATTGTCATTTCATTAAAGACGAAGCTGTACATCTGGTCTAAATGCAGACTGAAGCACAGTGCAGTTAGCAATGCCTGCAAATGAAAAGAAAGAAAAGGCAGAGGTGACCACAACCATAGATATAAAGGTCAAACTATGTACATACAGGAGATGACTAGCTAGGGCATCATCACTGAGAGAAGGTAGTCTGCCATTGCATTCATTTGAGAGCATTCTGCACAATATACACAATACAAATAAATTGCTTATTTTGTCTATTTTTACACTGATACAATATTAAGAGGAAAATGCAGCATgttgaaaatgaaaataaaaagacACTTTTATTCTCCCT

Function

NR:

description
multiple epidermal growth factor-like domains protein 6

GO: NA

KEGG:

id description
K24333 MEGF6; multiple epidermal growth factor-like domains protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983552.1 True 7039 mRNA 0.51 38 55333097 55416079

Neighbor

gene id symbol gene type direction distance location
LOC110528019 LOC106582960 coding upstream 17194 55313448 ~ 55315903 (+)
LOC110527126 LOC106582962 coding upstream 124389 55207615 ~ 55208708 (+)
LOC110528013 LOC106582964 coding upstream 134029 55197770 ~ 55199068 (+)
LOC110528014 NA coding upstream 138035 55193493 ~ 55195062 (+)
LOC118965383 NA coding upstream 153303 55178707 ~ 55179794 (+)
LOC110528022 LOC106583050 coding downstream 89327 55505406 ~ 55508166 (+)
LOC110528024 LOC106583050 coding downstream 295556 55711635 ~ 55714713 (+)
LOC110528971 LOC106583048 coding downstream 376212 55792291 ~ 55798284 (+)
foxp4 LOC106583051 coding downstream 691588 56107667 ~ 56295859 (+)
mdfi LOC106583052 coding downstream 959120 56375199 ~ 56376062 (+)
G625139 NA non-coding upstream 29910 55302334 ~ 55303187 (+)
G625089 NA non-coding upstream 97483 55235355 ~ 55235614 (+)
G625088 NA non-coding upstream 97764 55235109 ~ 55235333 (+)
G625087 NA non-coding upstream 98051 55234740 ~ 55235046 (+)
G625086 NA non-coding upstream 98641 55234140 ~ 55234456 (+)
G625196 NA non-coding downstream 14538 55430617 ~ 55430941 (+)
G625198 NA non-coding downstream 17379 55433458 ~ 55433752 (+)
G625199 NA non-coding downstream 18575 55434654 ~ 55434950 (+)
G625202 NA non-coding downstream 20512 55436591 ~ 55436817 (+)
G625205 NA non-coding downstream 25981 55442060 ~ 55442261 (+)
G625038 NA other upstream 119186 55211705 ~ 55213911 (+)
LOC110528007 LOC106582974 other upstream 260710 55053185 ~ 55074095 (+)
G624962 LOC106582975 other upstream 280409 55047296 ~ 55052688 (+)
G624628 NA other upstream 508898 54823637 ~ 54824199 (+)
G625222 NA other downstream 56389 55472468 ~ 55472843 (+)
G626004 NA other downstream 654975 56071054 ~ 56078929 (+)
G626417 NA other downstream 1066315 56482394 ~ 56485304 (+)
snrpe ruxe other downstream 1903623 57319669 ~ 57323047 (+)

Expression


Co-expression Network