LOC110528022 (LOC106583050)


Basic Information

Item Value
gene id LOC110528022
gene name LOC106583050
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55505406 ~ 55508166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609800.2
aaatggctGCTCCATTACAAATGTCACATTAAACAATAGAAGTGCTCTTTTCTGTAATGTTGAAAACGTGTTCGATCTCTTACGTATTATTTTGACCTCTTTTGCAGGGTATACCTAAACATGGTCCATCTACCATCCTTCCTACTGAAGACGTACCATGGAGGACACATTGTCATCAGATTGGCAATGGCTGGCCACAAACAGTCTAACAGACCTTTCTACCGCATTGTGGCAGCTTACAACAAGCGAGCACGAGACAGTAAATACATAGAACAGCTAGGCTCTTATGACCCCCTGCCAAACATCTACAATGAGAAACTTGTCAGCATCAACTATGACAGGATCAAGTACTGGATGGGCTGTGGTGCACATCCAACGAAGCCTGTGGCCAAACTTCTAGGACTGGCTGGGTTCTTCCCCCTGCATCCCATGACGGTGACAGAAACAGAGCGTCACAGGGCCCTGGCAGAACTAGCAGAGGAAGCAGCTCCACAGGATGGAGTTAAGCAGCAGCAACTATGATAGCTGGAGCATGGGGGACTGTCAAGCATAGCAGGGTGTGGTTACTGTACACAAAGGTCAGCTAGAAATGCCATTCTCCTCCCAAAAGGTTAACTGTTTCCAGTGAAAGTCTTTGTGAACTATGAATATTCATAAGCAGTGCTTAACAGAACAACTTATGAAGGCTTCATATAGCATACATAAAGTCGTCATAAGCACCACATAGTCTTCAGATACACTTAAATTATATGTCATACTCTATAAATGATGTATAAAAGGATGTCATAACCAGGCTGATGAAACTAATGTGGATGTATTTTGCATAGAGGCCCCTGTGGGACAGTCATTTAACCTTTTGAGGTCCCATTTTAAATGAAAGAATAACGTATGTCGTACATAAAGTCTTCATATATAATCTAAGTGTATGTCATACTCTATAAAGGATGTCATAACCAGGCACAATGTAGGGTGAATTGCCAAATGTCACATACCTCATTGTGTATGTTTATGCACCGTTTATAGAGCATGACATACAAATATAGAggatttgtgaagcatttatgtcGTGCATATGAAACATTTATGTATGCTATATAAGTTGTACTGTATTTAAAATGTGACCCTGTTGGATGGTGGACGCAATATTTAAGTCCGTCAAACATAGGAGAGtaatgacatacagtgccttaaagtattcatacccctggacttaCTCAACATTTTGTGTTAGTCTGAataaaaaatggattaaataaa

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02959 RP-S16, MRPS16, rpsP; small subunit ribosomal protein S16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609800.2 True 1257 mRNA 0.40 3 55505406 55508166

Neighbor

gene id symbol gene type direction distance location
LOC110528970 LOC106582957 coding upstream 89327 55333097 ~ 55416079 (+)
LOC110528019 LOC106582960 coding upstream 189503 55313448 ~ 55315903 (+)
LOC110527126 LOC106582962 coding upstream 296698 55207615 ~ 55208708 (+)
LOC110528013 LOC106582964 coding upstream 306338 55197770 ~ 55199068 (+)
LOC110528014 NA coding upstream 310344 55193493 ~ 55195062 (+)
LOC110528024 LOC106583050 coding downstream 203469 55711635 ~ 55714713 (+)
LOC110528971 LOC106583048 coding downstream 284125 55792291 ~ 55798284 (+)
foxp4 LOC106583051 coding downstream 599501 56107667 ~ 56295859 (+)
mdfi LOC106583052 coding downstream 867033 56375199 ~ 56376062 (+)
ppfia4 LOC106583137 coding downstream 1097726 56605892 ~ 56716813 (+)
G625225 NA non-coding upstream 30096 55475040 ~ 55475310 (+)
G625224 NA non-coding upstream 31188 55474000 ~ 55474218 (+)
G625208 NA non-coding upstream 58079 55446676 ~ 55447327 (+)
G625205 NA non-coding upstream 63145 55442060 ~ 55442261 (+)
G625202 NA non-coding upstream 68589 55436591 ~ 55436817 (+)
G625256 NA non-coding downstream 17306 55525472 ~ 55528088 (+)
G625244 dj-1 non-coding downstream 58816 55566982 ~ 55571742 (+)
G625302 pax7b non-coding downstream 117453 55625619 ~ 55626641 (+)
G625328 NA non-coding downstream 166885 55675051 ~ 55729221 (+)
G625392 NA non-coding downstream 282136 55790302 ~ 55790523 (+)
G625222 NA other upstream 32563 55472468 ~ 55472843 (+)
G625038 NA other upstream 291495 55211705 ~ 55213911 (+)
LOC110528007 LOC106582974 other upstream 433019 55053185 ~ 55074095 (+)
G624962 LOC106582975 other upstream 452718 55047296 ~ 55052688 (+)
G626004 NA other downstream 562888 56071054 ~ 56078929 (+)
G626417 NA other downstream 974228 56482394 ~ 56485304 (+)
snrpe ruxe other downstream 1811536 57319669 ~ 57323047 (+)
G627035 NA other downstream 2034716 57542882 ~ 57596051 (+)

Expression


Co-expression Network