tmem183a (tmem183a)


Basic Information

Item Value
gene id tmem183a
gene name tmem183a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56599243 ~ 56604594 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609806.2
ACGTCAACTAATTTGCGTCAGTCCCATGATGGCTGACGATCCTGGAGGAACATTTTTCGATTGCTGTCCcacttttttctctttctctttaccTCTGCTTGTCATAGAGACATGGCAGGACACACAGCCTCGATAAGTGGCCACAGACCCCTCTTACCGTCATGCCCAAGAAAGGGAACCGAAAACGGCTGAAATTTCGGTCCGGGGACATCTGCTCCGAGTCAGTGACTGTCGCTGATTTTGCCAATGCTGACCCAGCCGTTGTGAAGTCGGGGAGGGTGAAAAAGGCTGTTGCCAATGCAGTTGAAAAAGAAGTGAAGTTGTTGTGTGGACTGGAGGCGTCACAGGGTTCCTTACAGGAGGTGTTCTCGTCAGTGTCCAGCCTCACCGGAGACGCCCTTGAGAGTAGCGACGACCTCGACCCCAGGGAGGATGGAGTGAACGAGCCTAAAGAGGCACGCAAGAAGAAAAACAAGAGAAGGAAAGAGTGTAGCGAGTGCAGTGATGGAGAGGACTACACAGTGGATATCTGGCTGGTGCTGGCTTCTTATATCCGTCCAGAGGATGTGTGTACGTTTGCTCTGATCTGCAGAAACGCCTGGACCGTCACCTGCACTGCTGCCTTCTGGACCAGACTATACAAAAGACACTACAGTCTGGATGCTTACCTGCCGTTTCGTCTGCAGCCAGACTCCATAGCAAGGAAGCGTTGTCTACGGGCTCGTGTGATTCGCTCCCTCTTCCACCTGTATGAGCCATTCAGCTCACGTGTCTCCCTAAGCCCCGCCCTCCCCGAGTCCCCGCCCACCACGCTACTTAACTCCAAGTGTCTGCTGTTCTGGGTCAATAAGGTTGTGGGCACTCGACCTGAGCCCATGTGGGAGTTCAACTTCAAGTTTGTGAAGCAGGCGATGAGGTGTAAGGCTGGCAGTGCCACCCGGGGTCTGCTGCTGCCCCGTCAGTATGAGGAGGTCCATGCCAACCCAGACTCAGACTGCTACCTGCTGCAGGTCACCACCCTCAACTTCATCTTCACCTCAATTGTCATGGGGATGACCCTTTCCCTGTTTAACGTCAATGTGAATGCGGACATGCGTCACCACAGAGTGTGTCTGGTGTTCCAGGACTCTCCTCTCCAGcaggggaggaggaaaggggagcAGGGGGGGACACAGGTGGTGCTGGACCCTGTACACAGCGTGAGACTCATGGACTGGTGGCATCCTCAGTACCCTTCATCCCCCTACACCTAGAGCCCTCATATTATCCCACATGCTCCACACAACACCCATTTAGTCCTAGAAATCACTGTAACCGTCTGCTCGAACACCTAGAGCGCCCAAAACCATCCACAATACCGTCTCCCTGTACACCCAGAACCTTGCTTCACCTCACCCTTCTCCAGCCCCCAACACAGTCCTCTAGTGTATTATTTACATCCCCCTACACCAAAAACCACCTACCTCCTCAGTACCCTAGCTCTCTATAGACAAACCCTCAACTTCCAATCCCCCTTACATTGCCTACCCTCAGACCACCCTATAAGTTTGTTGAACAGATGTAGACAATGTAATTTCTTTTAATATTTCCTCTCTAACTGTGACCTCTAAGGGACTTTTGATTTCACTTATTGATTTGACTATTCTACGGGCCAAAATTATGATTTGCTGCTTGCGTaattatttgatttgatacctCTAATCATTGCTTACTTTTAAATTGTAATTTTTAAAACCCCACCTCCTGATTCATCCCCTGTGTATTCTCCTCAGGAAGTAATGTCAGATCTGAAAACTCTGGTCAGTTCTGAGGCTGCTGCATTGTAGCGGAGCAGCATTTTATATCCTGCCTCTGTCTGTTAGAATGTTTATGAACACCAGGAGACCAGTCGTATgtaaacaatgaccagtagaaacatGTGAATCATGCTtaatttcaaaaaaaaaaaaggggtgtATTTGAAGAATCAACATATAATACCCACAGGAGACTATTTCAGTTTTACTATTTACTCAATCGTCCAATCAAAATGCATTTAAGAACATTTGTGTTTGAATTCAGAAGTTTATCGTGTGTAGTGAAAAGCAAAGCTTTTTGTTGATCAGACCTGAAATTGCTTTATTGTAAATACATGTATAGCTGATTGACCTTGTGAAGGACATGTATACATGTTTGGCTGTGCGAGCCATCCATAATATCATTCCGCATGTAAAGTCTGGAAGCTGTCTGTATGTGATCTGATTGTTTGGCCAACCTCCTGTACTGTAATACAACTAAAGAACCCCTTCCATAC

Function

symbol description
tmem183a Predicted to be involved in regulation of protein stability. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human TMEM183A (transmembrane protein 183A).

NR:

description
transmembrane protein 183A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609806.2 True 2293 mRNA 0.48 8 56599243 56604594

Neighbor

gene id symbol gene type direction distance location
tfeb LOC106583139 coding downstream 6232 56482373 ~ 56593011 (-)
LOC110528023 errfi coding downstream 864222 55727429 ~ 55735021 (-)
pax7b pax7b coding downstream 899935 55620553 ~ 55699308 (-)
LOC118965301 NA coding downstream 949371 55644983 ~ 55649872 (-)
LOC110528021 dj-1 coding downstream 1027516 55567122 ~ 55571727 (-)
myog tmyogenin coding upstream 112282 56716876 ~ 56720187 (-)
mdm4 mdm4 coding upstream 152472 56757066 ~ 56772426 (-)
sort1a LOC106583135 coding upstream 168221 56772815 ~ 56796604 (-)
psma5 psma5 coding upstream 192254 56796848 ~ 56806013 (-)
vamp3 vamp3 coding upstream 249217 56853567 ~ 56869607 (-)
G627175 NA non-coding downstream 102611 56495308 ~ 56496632 (-)
G627172 NA non-coding downstream 107287 56491664 ~ 56491956 (-)
G626402 NA non-coding downstream 172284 56426750 ~ 56426959 (-)
G626384 NA non-coding downstream 199929 56399103 ~ 56399314 (-)
G627281 NA non-coding upstream 144131 56748725 ~ 56750461 (-)
G627295 NA non-coding upstream 210003 56814597 ~ 56814801 (-)
G627300 NA non-coding upstream 212708 56817302 ~ 56817561 (-)
G627305 LOC106583134 non-coding upstream 218526 56823120 ~ 56823415 (-)
G627306 NA non-coding upstream 220131 56824725 ~ 56825042 (-)
LOC110528020 LOC106582955 other downstream 1165171 55420466 ~ 55566988 (-)
G625472 LOC106582968 other downstream 1427043 55164492 ~ 55188756 (-)
G625426 NA other downstream 1523847 55072479 ~ 55075396 (-)
G622985 NA other downstream 3276412 53305536 ~ 53322831 (-)
G619733 NA other downstream 5640703 50956271 ~ 50958540 (-)
G627254 NA other upstream 86729 56691323 ~ 56696091 (-)
G627314 NA other upstream 229991 56834350 ~ 56835092 (-)
G627323 NA other upstream 242368 56846962 ~ 56852301 (-)
LOC110528040 NA other upstream 447597 57052191 ~ 57059527 (-)

Expression


Co-expression Network