Gene
RNA
| Item | Value |
|---|---|
| gene id | ppfia4 |
| gene name | LOC106583137 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 56605892 ~ 56716813 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: liprin-alpha-4-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036983584.1 | False | 4533 | mRNA | 0.55 | 28 | 56605892 | 56715316 |
| XM_036983580.1 | False | 4559 | mRNA | 0.55 | 29 | 56605893 | 56715316 |
| XM_036983578.1 | False | 6059 | mRNA | 0.52 | 29 | 56605893 | 56716813 |
| XM_036983579.1 | False | 6143 | mRNA | 0.52 | 30 | 56605893 | 56716813 |
| XM_036983583.1 | False | 6119 | mRNA | 0.52 | 29 | 56605893 | 56716813 |
| XM_036983587.1 | False | 6065 | mRNA | 0.52 | 28 | 56605893 | 56716813 |
| XM_036983575.1 | False | 6154 | mRNA | 0.52 | 30 | 56605894 | 56716813 |
| XM_036983576.1 | False | 6018 | mRNA | 0.52 | 31 | 56605894 | 56716813 |
| XM_036983577.1 | False | 6151 | mRNA | 0.52 | 30 | 56605894 | 56716813 |
| XM_036983582.1 | False | 6127 | mRNA | 0.52 | 29 | 56605894 | 56716813 |
| XM_036983586.1 | False | 6082 | mRNA | 0.52 | 29 | 56605894 | 56716813 |
| XM_036983581.1 | False | 6132 | mRNA | 0.52 | 30 | 56605895 | 56716813 |
| XM_036983588.1 | False | 5269 | mRNA | 0.52 | 30 | 56671236 | 56716813 |
| XM_036983589.1 | True | 4301 | mRNA | 0.51 | 24 | 56697763 | 56716813 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| mdfi | LOC106583052 | coding | upstream | 229830 | 56375199 ~ 56376062 (+) |
| foxp4 | LOC106583051 | coding | upstream | 310033 | 56107667 ~ 56295859 (+) |
| LOC110528971 | LOC106583048 | coding | upstream | 807608 | 55792291 ~ 55798284 (+) |
| LOC110528024 | LOC106583050 | coding | upstream | 891179 | 55711635 ~ 55714713 (+) |
| LOC110528022 | LOC106583050 | coding | upstream | 1097726 | 55505406 ~ 55508166 (+) |
| LOC110528029 | mdm4 | coding | downstream | 33991 | 56750804 ~ 56766586 (+) |
| LOC110528032 | LOC106583134 | coding | downstream | 100468 | 56817281 ~ 56842143 (+) |
| LOC110528976 | LOC106583066 | coding | downstream | 131693 | 56848506 ~ 56849449 (+) |
| LOC110528036 | LOC106583132 | coding | downstream | 301732 | 57018545 ~ 57029242 (+) |
| fbxo2 | LOC106583126 | coding | downstream | 329687 | 57046500 ~ 57052885 (+) |
| G626468 | NA | non-coding | upstream | 80169 | 56525382 ~ 56525723 (+) |
| G626400 | NA | non-coding | upstream | 179918 | 56425734 ~ 56425974 (+) |
| G626323 | NA | non-coding | upstream | 236383 | 56342181 ~ 56369509 (+) |
| G626310 | NA | non-coding | upstream | 281951 | 56323740 ~ 56323941 (+) |
| G626300 | NA | non-coding | upstream | 295893 | 56309737 ~ 56309999 (+) |
| G626594 | NA | non-coding | downstream | 11587 | 56728400 ~ 56728632 (+) |
| G626598 | NA | non-coding | downstream | 21148 | 56737961 ~ 56740360 (+) |
| G626599 | NA | non-coding | downstream | 32326 | 56749139 ~ 56750289 (+) |
| G626633 | NA | non-coding | downstream | 98213 | 56815026 ~ 56815498 (+) |
| G626417 | NA | other | upstream | 120588 | 56482394 ~ 56485304 (+) |
| G626004 | NA | other | upstream | 526963 | 56071054 ~ 56078929 (+) |
| G625222 | NA | other | upstream | 1133049 | 55472468 ~ 55472843 (+) |
| G625038 | NA | other | upstream | 1391981 | 55211705 ~ 55213911 (+) |
| snrpe | ruxe | other | downstream | 602889 | 57319669 ~ 57323047 (+) |
| G627035 | NA | other | downstream | 826069 | 57542882 ~ 57596051 (+) |
| LOC110528055 | LOC106583107 | other | downstream | 1201221 | 57917801 ~ 58055214 (+) |
| LOC110528980 | LOC106583093 | other | downstream | 1786737 | 58502198 ~ 58589001 (+) |
| G628468 | LOC106583084 | other | downstream | 1991482 | 58708295 ~ 58713584 (+) |
