psma5 (psma5)


Basic Information

Item Value
gene id psma5
gene name psma5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56796848 ~ 56806013 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609811.2
accCTTAAACCTCATCAAAGACGAAGAGGAAGCATTTCCCTCTCGGTGTGTTTGAGCACGCACACGCTTCCTGTAGAAACAAGCGAACTCATTCTACGATCCAGAGCGGGTGATCTAAAACCTTCAAGATGTTTTTGACGAGATCGGAGTACGACAGAGGAGTAAACACCTTTTCTCCAGAGGGACGACTGTTCCAAGTGGAATATGCTATTGAGGCGATTAAGCTGGGCTCCACAGCCATTGGCATCCAGACATCTGAGGGGGTGTGTCTGGCCGTGGAGAAGAGGATAACATCTCCTCTAATGGAGCCAAGCAGCATCGAGAAGATTGTGGAGATCGACACCCACATCGGTTGTGCTATGAGTGGCTTGATAGCTGATGCCAAGACTCTTATTGACAAAGCAAGAGTGGAGACACAGAACCACTGGTTCACCTACAACGAGACCATGACAGTGGAGAGTGTGACCCAGGCCGTGTCTAACCTGGCCCTGCAGTTTGGAGAGGAGGATGCAGACCCTGGAGCCATGAGCCGGCCCTTTGGTGTAGCGCTTCTCTTTGGTGGACTGGATGAGAAAGGGCCCCAGCTgtaccaCATGGACCCATCAGGCACCTTTGTCCAGTGTGATGCCCGGGCCATCGGCTCTGCCTCTGAGGGAGCCCAGAGCTCTCTGCAGGAGGTCTACCACAAGTCCATGACGTTAAAAGAGGCCATCAAGTCATCCCTCACCATCCTAAAGCAGGTGATGGAGGAGAAGCTGAATGCCACCAACATTGAGCTGGCTACAATAGAGCCAGGCAAGACCTTCCACATGTAttccaaagaagagctggaggatgTTATCAAGGACATCTAGAGCAGAGTGGTGCTCTGTGGACCTTGTCAGCACAGAGGAGAGGGAATCCACctgggctctgaggatcaccaCACATTTCCCATCAGCACTCGCTAGTTTCATTGGTTCCTTGTGTGGGAGGCAACTCTTTGTAATGtgttatttttttcttattttggctCTGGAAATGGggaggcagggagcctagtggttaagaatgttgggccagtaactggaaggtcgctggttcaaatccctgagcagactaggtgaaacatcagttgatgtgcccttgagcaaggcactttaaccctaattgctctcaTAAATTGCTCTGAGCGTTTGCTACATGACTAAAATAATTTCTACAGTTCTGTACAGGCATCGGTCAGATCAGTGCTTAGAGCTGTGACATTAAAAAAGGGGGGTACTTTTTGTTATGGATCAATGCCTAAATAAAACTGTTGTATTCTAAAA

Function

symbol description
psma5 Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in nucleus. Orthologous to human PSMA5 (proteasome 20S subunit alpha 5).

NR:

description
Proteasome subunit alpha type-5

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02729 PSMA5; 20S proteasome subunit alpha 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609811.2 True 1310 mRNA 0.49 10 56796848 56806013

Neighbor

gene id symbol gene type direction distance location
sort1a LOC106583135 coding downstream 244 56772815 ~ 56796604 (-)
mdm4 mdm4 coding downstream 24422 56757066 ~ 56772426 (-)
myog tmyogenin coding downstream 76661 56716876 ~ 56720187 (-)
tmem183a tmem183a coding downstream 192254 56599243 ~ 56604594 (-)
tfeb LOC106583139 coding downstream 203837 56482373 ~ 56593011 (-)
vamp3 vamp3 coding upstream 47798 56853567 ~ 56869607 (-)
LOC110528035 LOC106583131 coding upstream 75318 56881331 ~ 57017276 (-)
phf13 LOC106583125 coding upstream 232411 57036803 ~ 57046463 (-)
LOC110528040 NA coding upstream 250391 57052191 ~ 57059527 (-)
cdc42 cdc42 coding upstream 461429 57267442 ~ 57305408 (-)
G627281 NA non-coding downstream 46387 56748725 ~ 56750461 (-)
G627175 NA non-coding downstream 300216 56495308 ~ 56496632 (-)
G627172 NA non-coding downstream 304892 56491664 ~ 56491956 (-)
G626402 NA non-coding downstream 369889 56426750 ~ 56426959 (-)
G627295 NA non-coding upstream 8584 56814597 ~ 56814801 (-)
G627300 NA non-coding upstream 11289 56817302 ~ 56817561 (-)
G627305 LOC106583134 non-coding upstream 17107 56823120 ~ 56823415 (-)
G627306 NA non-coding upstream 18712 56824725 ~ 56825042 (-)
G627307 NA non-coding upstream 20022 56826035 ~ 56826313 (-)
G627254 NA other downstream 100757 56691323 ~ 56696091 (-)
LOC110528020 LOC106582955 other downstream 1362776 55420466 ~ 55566988 (-)
G625472 LOC106582968 other downstream 1624648 55164492 ~ 55188756 (-)
G625426 NA other downstream 1721452 55072479 ~ 55075396 (-)
G622985 NA other downstream 3474017 53305536 ~ 53322831 (-)
G627314 NA other upstream 28572 56834350 ~ 56835092 (-)
G627323 NA other upstream 40949 56846962 ~ 56852301 (-)
G628575 LOC106579815 other upstream 1066037 57872050 ~ 57873331 (-)

Expression


Co-expression Network