phf13 (LOC106583125)


Basic Information

Item Value
gene id phf13
gene name LOC106583125
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 57036803 ~ 57046463 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609819.2
TCTCTCCAATCCAAACTACATTTTGCGGACCATATCAACAGTGGATTTATTAACAAATTAGAATAGctattcaaatgtgttttttgaGTAAAATATCCCTTTAAACCTCACTTCAGCGCTCTCTTTTTTTTCGAGGTGGTTCTCTCGACCAGTCCTTTCCTGTTTGATAAGTCTGAGTCTGAGTGAGAGGCAAGCAGTTAATGGCAACGGGGACACTGACAGTGTAGCTGGCGAACCCGTTTTGTTCAAGAGATACGGCAACATTTGACTTATTTGAACTATAATGCATTACTAAGTATCTCCCGGGGTATAGGCGAAACATTATATGCAGACAGTGTTTGTTGCTAGAATATTGTAAgctaacagttagctagctaacagtgcaATGTTTTGAACGTCGATGACACCAGAATTAGTTGTGCACTTCGTTTATTGCTAGCTAATTATATTATTAGGTAACTTAGCTACATTATACCAAAAGTATCACTTTTTAGAGATGGACAACGTTACTTCATCGTCACACCATCATGCATATGAATCAGAGGGCCAGGGGCACAGTCCACCATACAGGAGGCGGACGGTGGAGGACTTCAACAAGTTCTGCACATTTGTGTTGGCATATGCAGGCTATATCCCATATCCCCAGGAGGACTCTCCTCTGCGTAGTAGCTCCAGCCCCCCCAACAGTACAGGCAGTACAGCAGACAGTGATGGCTGGACCCCTGTCCCTCAACCCCCCTCTTGCCCCCCACGGCCCCCCATACCCCTGCAGGACAAGAACAGGAAACGACCCCATCCCACGGGAATCCACCCTGGGGCCTCACTATCCAGCCATGTTATGAAAAATCATGGCCATTTAGCGTCCTCCCTGCACCCAGATGACCAGAGGAAAGCCAACCaactgaagaagaggaggaaggaccGGGAGAGCCAGGCCGGCGAGCCGAGCTCTGCACATCAGGCCGACGCAATGAGCCCAGAGCCACAGTTCTCCCTGCCCCTGGGAGGACGACCAATCAAAGACGAGCCTGAGGATGACTTCTTCATCCCCCTCCACCCTTCGTCCCCTCACCCCCTGCCCAGCCCCTCTCACTTCAATAACTCCTCCCCCTGTAAGCAGGAGCACAATGAGGAGTGGGAGTGCTGGGCGGGACAGGGGCTGGTGGAGGGCATGGTGAAGGTGGAGAGTGTGGAGAGTTTTACTGGGAACAGGACGGTGATCCGACAGGGGAAACAGGTGGTGTTCCGAGATGAGGATGGCTCCGGAGAGGATGAGGACATCATGGTGGACTCCGatgATGACTCGTGGGACCTGGTGACGTGTTTCTGTATGAAGCCGTTTGCAGGCCGGGCCATGATTGAGTGTAACCAGTGTAACACGTGGATCCACCTGTCCTGTGCTAAGATCAGGAAGTCCCACGTTCCTGAGACTTATATGTGTCAGAGCTGCAGAGGCACACTGGGCCTGGCAGACACCCGCCGCTCATACCGCTCACGCATTGGCCCCCGCAGACACCTTCTTGACTGACCCCATTGCAAACCCCTTCACCCCTCTCACCTACATTTAGACCATGCCCCATACGGTTCTAACCCCAACCCGGTCCTGTAACGCATGCCCCAGGCCAGCCCTTTCGTTTTGTCCCTGACCCCAGTCCTACCCCATGCCCCAGGCCCTTTTCCTCACCCCTATTGTGTCGACTAAGCCTACTAGCCATCCCTCGCGTTCTTCAACACCCCCAAACTAAACCGATCCGAGTGCTATTTAAGATTTATTATACATTTGACGGTTTCTCTCTGCTTCCTTCCGGACTCTGTGTGCGTAAGTCAAtcactgaatgtctgtctgtagTAGTACAATAGTTGACCAGTAGGGTTGGACTCCGTAGTCTAGTCTGGCTGACCGGTTAGCTCCGACTGGATAGAGACTAGCGACGCATCTCGCATGAACAGTGGAAAGCTGTCTTCATTCTTAAACTGTCGGAGAGAATGGCCTATAGAGCTGCCACCCAACAGTGTGCATTTTGGGACGTTGGCCTTTTGCACTTATTTCATGCGTTAAAGGGGTGTGTTGACTTGCCAACCCCTTCTCCCCCAACCACCCTCTCAACTAGGTGGTTGGGGGAAGCCTTTGTCTAAAGCCTCAAGCAGAGGGTCTGTAGATAATGATGTCCagttctatactgaacaaaaatataaatgcaacatactGAGTAAGGAAatttgtcaattgaaataaatggattctatggatttcacatgacttggtcacacacacacttaacaaaaaaaaaggtagggtcgtggatcagaaaaccagttagtatttggtgtgaccaccatttgcctcatgcagcgcaacacatctcctttgcatatagttgatcaggctgtggaATGTTCTCCCACTCCTATTCAATGGCTgttcgaagttgctggatattggcaggaactggaacgctctgtcgatccagagcatcccaaatgggtgacatgtctggtgagttgtatttttttaacctatttaaataggcaagtcag
>XM_021609820.2
cacacaaactgtgcGAGAGAGAGGTTCAAACCTGGGCCCCGTGTCAGAAAGCAGGTTTAACAAACTCTGAGTTTAAACCTGAACTATGGGTTGACGAACTCTGAGCTGTCAAACTCTTGAGATTTCGGTTTCAAGACAGGTGACAACAGTTAGTTCAATCAACTCTGGGTAAAGTTAACCCTGAGTAAAGCACTTGCATGAGGAGATAAAACGCCCTCATCAATGGAACGCAGATAACATGATTCATCATGGCAACAGGAGAAAAAAAGGCTTCAACCTGTGAATGCGTTTGCAGAATGGCCAGGGGCACAGTCCACCATACAGGAGGCGGACGGTGGAGGACTTCAACAAGTTCTGCACATTTGTGTTGGCATATGCAGGCTATATCCCATATCCCCAGGAGGACTCTCCTCTGCGTAGTAGCTCCAGCCCCCCCAACAGTACAGGCAGTACAGCAGACAGTGATGGCTGGACCCCTGTCCCTCAACCCCCCTCTTGCCCCCCACGGCCCCCCATACCCCTGCAGGACAAGAACAGGAAACGACCCCATCCCACGGGAATCCACCCTGGGGCCTCACTATCCAGCCATGTTATGAAAAATCATGGCCATTTAGCGTCCTCCCTGCACCCAGATGACCAGAGGAAAGCCAACCaactgaagaagaggaggaaggaccGGGAGAGCCAGGCCGGCGAGCCGAGCTCTGCACATCAGGCCGACGCAATGAGCCCAGAGCCACAGTTCTCCCTGCCCCTGGGAGGACGACCAATCAAAGACGAGCCTGAGGATGACTTCTTCATCCCCCTCCACCCTTCGTCCCCTCACCCCCTGCCCAGCCCCTCTCACTTCAATAACTCCTCCCCCTGTAAGCAGGAGCACAATGAGGAGTGGGAGTGCTGGGCGGGACAGGGGCTGGTGGAGGGCATGGTGAAGGTGGAGAGTGTGGAGAGTTTTACTGGGAACAGGACGGTGATCCGACAGGGGAAACAGGTGGTGTTCCGAGATGAGGATGGCTCCGGAGAGGATGAGGACATCATGGTGGACTCCGatgATGACTCGTGGGACCTGGTGACGTGTTTCTGTATGAAGCCGTTTGCAGGCCGGGCCATGATTGAGTGTAACCAGTGTAACACGTGGATCCACCTGTCCTGTGCTAAGATCAGGAAGTCCCACGTTCCTGAGACTTATATGTGTCAGAGCTGCAGAGGCACACTGGGCCTGGCAGACACCCGCCGCTCATACCGCTCACGCATTGGCCCCCGCAGACACCTTCTTGACTGACCCCATTGCAAACCCCTTCACCCCTCTCACCTACATTTAGACCATGCCCCATACGGTTCTAACCCCAACCCGGTCCTGTAACGCATGCCCCAGGCCAGCCCTTTCGTTTTGTCCCTGACCCCAGTCCTACCCCATGCCCCAGGCCCTTTTCCTCACCCCTATTGTGTCGACTAAGCCTACTAGCCATCCCTCGCGTTCTTCAACACCCCCAAACTAAACCGATCCGAGTGCTATTTAAGATTTATTATACATTTGACGGTTTCTCTCTGCTTCCTTCCGGACTCTGTGTGCGTAAGTCAAtcactgaatgtctgtctgtagTAGTACAATAGTTGACCAGTAGGGTTGGACTCCGTAGTCTAGTCTGGCTGACCGGTTAGCTCCGACTGGATAGAGACTAGCGACGCATCTCGCATGAACAGTGGAAAGCTGTCTTCATTCTTAAACTGTCGGAGAGAATGGCCTATAGAGCTGCCACCCAACAGTGTGCATTTTGGGACGTTGGCCTTTTGCACTTATTTCATGCGTTAAAGGGGTGTGTTGACTTGCCAACCCCTTCTCCCCCAACCACCCTCTCAACTAGGTGGTTGGGGGAAGCCTTTGTCTAAAGCCTCAAGCAGAGGGTCTGTAGATAATGATGTCCagttctatactgaacaaaaatataaatgcaacatactGAGTAAGGAAatttgtcaattgaaataaatggattctatggatttcacatgacttggtcacacacacacttaacaaaaaaaaaggtagggtcgtggatcagaaaaccagttagtatttggtgtgaccaccatttgcctcatgcagcgcaacacatctcctttgcatatagttgatcaggctgtggaATGTTCTCCCACTCCTATTCAATGGCTgttcgaagttgctggatattggcaggaactggaacgctctgtcgatccagagcatcccaaatgggtgacatgtctggtgagttgtatttttttaacctatttaaataggcaagtcag
>TU713383
TGGAGAGTGTGGAGAGTTTTACTGGGAACAGGACGGTGATCCGACAGGGGAAACAGGTGGTGTTCCGAGATGAGGATGGCTCCGGAGAGGATGAGGACATCATGGTGGACTCCGatgATGACTCGTGGGACCTGGTGACGTGTTTCTGTATGAAGCCGTTTGCAGGCCGGGCCATGATTGAGTGTAACCAGTGTAACACGTGGATCCACCTGTCCTGTGCTAAGATCAGGAAGTCCCACGTTCCTGAGACTTATATGTGTCAGAGCTGCAGAGGCACACTGGGCCTGGCAGACACCCGCCGCTCATACCGCTCACGCATTGGCCCCCGCAGACACCTTCTTGACTGACCCCATTGCAAACCCCTTCACCCCTCTCACCTACATTTAGACCATGCCCCATACGGTTCTAACCCCAACCCGGTCCTGTAACGCATGCCCCAGGCCAGCCCTTTCGTTTTGTCCCTGACCCCAGTCCTACCCCATGCCCCAGGCCCTTTTCCTCACCCCTATTGTGTCGACTAAGCCTACTAGCCATCCCTCGCGTTCTTCAACACCCCCAAACTAAACCGATCCGAGTGCTATTTAAGATTTATTATACATTTGACGGTTTCTCTCTGCTTCCTTCCGGACTCTGTGTGCGTAAGTCAAtcactgaatgtctgtctgtagTAGTACAATAGTTGACCAGTAGGGTTGGACTCCGTAGTCTAGTCTGGCTGACCGGTTAGCTCCGACTGGATAGAGACTAGCGACGCATCTCGCATGAACAGTGGAAAGCTGTCTTCATTCTTAAACTGTCGGAGAGAATGGCCTATAGAGCTGCCACCCAACAGTGTGCATTTTGGGACGTTGGCCTTTTGCACTTATTTCATGCGTTAAAGGGGTGTGTTGACTTGCCAACCCCTTCTCCCCCAACCACCCTCTCAACTAGGTGGTTGGGGGAAGCCTTTGTCTAAAGCCTCAAGCAGAGGGTCTGTAGATAATGATGTCCagttctatactgaataTTAAGCCTTGAGACCTGGATTGTGTGctgttcagagggtgaatgggcaagacaaaatatttaagtgcctttgaactgggtatggtagtaagtgcctgttgcaccagtttgagtgtgtcaagaactgcaacttgacacaactgtgggaaccattggcatcaacatgggccagcatccctgtggaacgctttcgacaccttgagtCCATGGCCCGGACAATTTTTatgtatgtattttatttaactaggcaagtcggttaagaacacattcttatttacaattactgcctaccccggccaaaccctaacaacaCTAGTCCAATTGTGGGCCgacctttgggactcccaatcatggccagttgtgatacagcctggaattgaaccagggtctgtagtgacacctctagcattgaaatgcagtgccttgga

Function

NR:

description
PHD finger protein 13 isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609819.2 False 2538 mRNA 0.50 5 57038424 57043462
XM_021609820.2 False 2292 mRNA 0.52 5 57038424 57046463
TU713383 True 1433 lncRNA 0.50 3 57036803 57039929

Neighbor

gene id symbol gene type direction distance location
LOC110528035 LOC106583131 coding downstream 21148 56881331 ~ 57017276 (-)
vamp3 vamp3 coding downstream 168817 56853567 ~ 56869607 (-)
psma5 psma5 coding downstream 232411 56796848 ~ 56806013 (-)
sort1a LOC106583135 coding downstream 241820 56772815 ~ 56796604 (-)
mdm4 mdm4 coding downstream 265998 56757066 ~ 56772426 (-)
LOC110528040 NA coding upstream 9941 57052191 ~ 57059527 (-)
cdc42 cdc42 coding upstream 220979 57267442 ~ 57305408 (-)
LOC110528043 LOC106583121 coding upstream 359284 57405747 ~ 57441999 (-)
LOC110528045 LOC106583117 coding upstream 415457 57461920 ~ 57541619 (-)
LOC118965302 NA coding upstream 472765 57519228 ~ 57523173 (-)
G627381 NA non-coding downstream 3435 57032850 ~ 57034989 (-)
G627432 NA non-coding downstream 15651 57021889 ~ 57022773 (-)
G627408 NA non-coding downstream 50712 56984344 ~ 56987712 (-)
G627346 NA non-coding downstream 133646 56904400 ~ 56904778 (-)
G627343 NA non-coding downstream 139889 56898092 ~ 56898535 (-)
G627477 NA non-coding upstream 69827 57116290 ~ 57117047 (-)
G627505 NA non-coding upstream 97931 57144394 ~ 57201631 (-)
G627555 NA non-coding upstream 191125 57237588 ~ 57237990 (-)
G627563 NA non-coding upstream 242988 57289451 ~ 57298281 (-)
G627323 NA other downstream 186123 56846962 ~ 56852301 (-)
G627314 NA other downstream 203332 56834350 ~ 56835092 (-)
G627254 NA other downstream 342333 56691323 ~ 56696091 (-)
LOC110528020 LOC106582955 other downstream 1604352 55420466 ~ 55566988 (-)
G628575 LOC106579815 other upstream 825587 57872050 ~ 57873331 (-)
G628714 NA other upstream 1070727 58117190 ~ 58118122 (-)
LOC110528069 LOC106583062 other upstream 1379712 58425680 ~ 58437154 (-)
LOC110528083 LOC106583085 other upstream 1645354 58691817 ~ 58695856 (-)

Expression


Co-expression Network