LOC110528040


Basic Information

Item Value
gene id LOC110528040
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 57052191 ~ 57059527 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609822.2
CGTTGGTACGTGTTATGACTGAACCATTCCGGGGTTATTTTCTGGTTACACACAGTTTCCTTCCAAACAGCTGTTTTACACCTCAGTGTTTGAACAGGCGACTGTTGTTGTATGCACTTTCTGTGTTGACAATCTGAGCTCTTATTGAACGTCGAGTCGTTGTGCTGTGGTGGCtgtcagtcagtaaccatggagcCCACCTGTCGCAAAGACAAAGTGAAGTTGAACTCCACCCCTACTCGCGGCGACAGGGCCAAGCAGAAATCCGCCCAGCAGGAACTGAAACAACGACAACGGGCAGAGATCTACGCCCTGAATAAGGTGATGACAGAGCTGGAGCAGCAGCAGTTTGAGGCCTTCTGTAAGCAGATGCAGTCCCAGGGAGAGTGACTGACAACCTCCCAATGGCAGCCCAGGACCATAAACCCTAACCTTCAGCAGCCCTGACCCACAGTTCAACTACAGTCTCAACCAGTAAAACAAGAGTATTTCTTACATATCGTACAGACACGTTGAACTGTGAAGATTGCTGAGCGATTAACTGAGGGGTAATTTATTTTAcgtttttttaaacaacaaattGACCTACTtgggttcaattatttgaattccattattttgttttatgtgcacattgcacagtttctctagagataaatcagatcctgtttgaactgtgcaatgtagtagggagttgtagtttccaacagacCAATATTCTACTTAGTTTTGCGCTTAAAacataattaactacaatgaccataatccattgcgcattTACTTGTACGGCctttcttttacgcctgctacaaAAGCGGCAGAAGAATGCACAATCatgagggggatatagagagcagTTGTTACttcgaggtatctctacctgaaaataaatgatctattctaagtgattgatagttggtattcagcagtcataaaagtctgccttatttactttgaagaactacaaaaTATAGATTTTGTCAAAGCATatgcagcagctctatagagatgagctgttgacttggaatgaaataagtcataaaacaaatgtaatatacacaactgataTGTGAAtaaatggttaataagtgataagcagcaATGAGCAGTTACTATCATCATGGGATTTTgattcattgttttattctgtattacagcattcaacccaaatAATCAAAACCTAAATCCAAAACctttaatttttttaataatcAAACCGAACCCAAAACAACCTCAAAGCACTAATCGTTTAGCACTAACTGTGAATCATTTGCTGAGGGATATTTCCATCCTGGTCCTGTTATGCAGTGGTCGCCATAGACATGATGATAATCATGTGGATCACTGGTGGTGTGCTCTCTTATTGCCTCTCCTGTCCTCACACGCTGAAACGGTTGTGTTTTCTGGTATGTGCAATGTTGTCACGGCGCCAGTCAAAACAGTTTTAGTGCATGGAGTGTAAGGACAATAACACGCAGACAGACTCAAACACTCTGGGGATACAGCCATTGGTTATCAACATGCTCCATAAGTTGTCATAAGTGGACATGCGTTGCATTGTGAATGTAACAAGACAAGATTATTGGCatattctaaactcagcaaaaaaaaaaaaa
>XM_036983600.1
acagtagatctccaggaagagggttgggcagccctgacatagactgaccaggataatccagGTCGAGTCGTTGTGCTGTGGTGGCtgtcagtcagtaaccatggagcCCACCTGTCGCAAAGACAAAGTGAAGTTGAACTCCACCCCTACTCGCGGCGACAGGGCCAAGCAGAAATCCGCCCAGCAGGAACTGAAACAACGACAACGGGCAGAGATCTACGCCCTGAATAAGGTGATGACAGAGCTGGAGCAGCAGCAGTTTGAGGCCTTCTGTAAGCAGATGCAGTCCCAGGGAGAGTGACTGACAACCTCCCAATGGCAGCCCAGGACCATAAACCCTAACCTTCAGCAGCCCTGACCCACAGTTCAACTACAGTCTCAACCAGTAAAACAAGAGTATTTCTTACATATCGTACAGACACGTTGAACTGTGAAGATTGCTGAGCGATTAACTGAGGGGTAATTTATTTTAcgtttttttaaacaacaaattGACCTACTtgggttcaattatttgaattccattattttgttttatgtgcacattgcacagtttctctagagataaatcagatcctgtttgaactgtgcaatgtagtagggagttgtagtttccaacagacCAATATTCTACTTAGTTTTGCGCTTAAAacataattaactacaatgaccataatccattgcgcattTACTTGTACGGCctttcttttacgcctgctacaaAAGCGGCAGAAGAATGCACAATCatgagggggatatagagagcagTTGTTACttcgaggtatctctacctgaaaataaatgatctattctaagtgattgatagttggtattcagcagtcataaaagtctgccttatttactttgaagaactacaaaaTATAGATTTTGTCAAAGCATatgcagcagctctatagagatgagctgttgacttggaatgaaataagtcataaaacaaatgtaatatacacaactgataTGTGAAtaaatggttaataagtgataagcagcaATGAGCAGTTACTATCATCATGGGATTTTgattcattgttttattctgtattacagcattcaacccaaatAATCAAAACCTAAATCCAAAACctttaatttttttaataatcAAACCGAACCCAAAACAACCTCAAAGCACTAATCGTTTAGCACTAACTGTGAATCATTTGCTGAGGGATATTTCCATCCTGGTCCTGTTATGCAGTGGTCGCCATAGACATGATGATAATCATGTGGATCACTGGTGGTGTGCTCTCTTATTGCCTCTCCTGTCCTCACACGCTGAAACGGTTGTGTTTTCTGGTATGTGCAATGTTGTCACGGCGCCAGTCAAAACAGTTTTAGTGCATGGAGTGTAAGGACAATAACACGCAGACAGACTCAAACACTCTGGGGATACAGCCATTGGTTATCAACATGCTCCATAAGTTGTCATAAGTGGACATGCGTTGCATTGTGAATGTAACAAGACAAGATTATTGGCatattctaaactcagcaaaaaaaaaaaaa
>TU713380
ACAGTTTCCTTCCAAACAGCTGTTTTACACCTCAGTGTTTGAACAGGCGACTGTTGTTGTATGCACTTTCTGTGTTGACAATCTGAGCTCTTATTGAACGTCGAGTCGTTGTGCTGTGGTGGCtgtcagtcagtaaccatggagcCCACCTGTCGCAAAGACAAAGTGAAGTTGAACTCCACCCCTACTCGCGGCGACAGGGCCAAGCAGAAATCCGCCCAGCAGGAACTGAAACAACGACAACGGGCAGAGATCTACGCCCTGAATAAGGTGATGACAGAGCTGGAGCAGCAGCAGTTTGAGGCCTTCTGTAAGCAGATGCAGTCCCAGGGAGAGTGACTGACAACCTCCCAATGGCAGCCCAGGACCATAAACCCTAACCTTCAGCAGCCCTGACCCACAGTTCAACTACAGTCTCAACCAGTAAAACAAGAGTATTTCTTACATATCGTACAGACACGTTGAACTGTGAAGATTGCTGAGCGATTAACTGAGGGGTCTCTACAATAACAGAGCTCCCAGTGACTCGAACGCCAAACCAGCCGTCCCAGTACTTGGTGTCCTGTCCTCCATGTTCAAACGAGATGAAGCGCAGGCCAGGACCGTAATCATTGAAA
>TU713377
ACAGTTTCCTTCCAAACAGCTGTTTTACACCTCAGTGTTTGAACAGGCGACTGTTGTTGTATGCACTTTCTGTGTTGACAATCTGAGCTCTTATTGAACGTCGAGTCGTTGTGCTGTGGTGGCtgtcagtcagtaaccatggagcCCACCTGTCGCAAAGACAAAGTGAAGTTGAACTCCACCCCTACTCGCGGCGACAGGGCCAAGCAGAAATCCGCCCAGCAGGAACTGAAACAACGACAACGGGCAGAGATCTACGCCCTGAATAAGGTGATGACAGAGCTGGAGCAGCAGCAGTTTGAGGCCTTCTGTAAGCAGATGCAGTCCCAGGGAGAGTGACTGACAACCTCCCAATGGCAGCCCAGGACCATAAACCCTAACCTTCAGCAGCCCTGACCCACAGTTCAACTACAGTCTCAACCAGTAAAACAAGAGTATTTCTTACATATCGTACAGACACGTTGAACTGTGAAGATTGCTGAGCGATTAACTGAGGGGTAATTTATTTTAcgtttttttaaacaacaaattGACCTACTtgggttcaattatttgaattccattattttgttttatgtgcacattgcacagtttctctagagataaatcagatcctgtttgaactgtgcaatgtagtagggagttgtagtttccaacagacCAATATTCTACTTAGTTTTGCGCTTAAAacataattaactacaatgaccataatccattgcgcattTACTTGTACGGCctttcttttacgcctgctacaaAAGCGGCAGAAGAATGCACAATCatgagggggatatagagagcagTTGTTACttcgaggtatctctacctgaaaataaatgatctattctaagtgattgatagttggtattcagcagtcataaaagtctgccttatttactttgaagaactacaaaaTATAGATTTTGTCAAAGCATatgcagcagctctatagagatgagctgttgacttggaatgaaataagtcataaaacaaatgtaatatacacaactgataTGTGAAtaaatggttaataagtgataagcagcaATGAGCAGTTACTATCATCATGGGATTTTgattcattgttttattctgtattacagcattcaacccaaatAATCAAAACCTAAATCCAAAACctttaatttttttaataatcAAACCGAACCCAAAACAACCTCAAAGCACTAATCGTTTAGCACTAACTGTGAATCATTTGCTGAGGGATATTTCCATCCTGGTCCTGTTATGCAGTGGTCGCCATAGACATGATGATAATCATGTGGATCACTGGTGGTGTGCTCTCTTATTGCCTCTCCTGTCCTCACACGCTGAAACGGTTGTGTTTTCTGGTATGTGCAATGTTGTCACGGCGCCAGTCAAAACAGTTTTAGTGCATGGAGTGTAAGGACAATAACACGCAGACAGACTCAAACACTCTGGGGATACAGCCATTGGTTATCAACATGCTCCATAAGTTGTCATAAGTGGACATGCGTTGCATTGTGAATGTAACAAGACAAGATTATTGGCatattctaaactcagcaaaaaaaaaaaaatgtcctctgtCAACTGtgcttattttcagcaaacttaccatgtttaaatatttgtatgaacataacaagattcaacaactgagacacaaactgaacaagttccacagacatgtgactaacagaaatggaaaaatgtgtccCCGAACAAAGGAGGGGGGGatcaaaataattttaaaaaactaacagtcaatatctggtgtggccaccagctgcattaagtactgcagtgcatctcatcctcatggactgcaccagatttgccagttcttgctgtgagatgttaccccacgcTTCCACCAAGGCATGGACATTTCTGGGTGGAATGGACCTAGCcgtcaccctctgatccaacaggtcccagacatgctcaatgggattgagatccgggctctttgctggccatggcagaacactgacattcctggtttgcaggaaatcatgcacagaacgagcagtatggcttgtggcattgtcatgctggagggtcatgtcaggatgagcctgcaggaagggtaccacataagggaggaggatgtcttccctaaaACGCACAGCGTTGCGATTGCCTGTAATGACAACAGACTCAGTcccatgatgctgtgacacaccaccccagaccacgacggaccctccacctccaaatcgatcccgctccagagtacaggcctcggtgtaacgctcattccttcgacgataaacgcgaaccCGACcaccacccctggtgagacaaaaccacaactcgtcagtgaagagcacttttttccagtcctgtctggtccagcgacggtgggtttgtgacgttgttgccggtgatgtctggtgaggacctgccttacaacaggcctacaagccctcaatcaAGACTCTCaacctattgcagacagtctgagcactgatggcgggattgtgcattcctggtgtaactcaggcagttgttgccatcctgtacctgtcccacaggtgtgatgtttggatgtaccgatcctgtgcaggtgatgttacacgtggtctgaaactgcgaggacgatcagctgtccgtacTGTCTTGggtgtctcacagtatggacattgcaatttattgccctggccacatctgcagtcctcatgcctccttgcagcatgcctgggcatctttcttttggtgtttgtcagagtccgtagaaaggcctctttagtgtcctaagttttcataactgtgaccttaattgcctaccgtctgtaagctgttagtgtcttcacgactgttccacaggtgtatgttcattaattgtttatggttcattgaacaagcaaaGGGAAACCgtttttaaaccctttacaatgaagatctgtgaagttatttccaaattatctttgaagacagggtcctgaaaaagggacgtttcttttttttgctgagtttatatacagaGAAGGACTGTGTAATGaagaggtgttcagtcccagaggGTCACATGGGATGGCCAGGCTTATTTGCGCCCCTACAGGACTAGAAATGCCCACCCGTTGGTGTAATCTATTCATAAATATGGATGTTATGGATCTGAGGTGCTACCACTTTTCCACTCCAAGCCAAAGTTTAACATCACCCTTCTCCCCATATTGCCTAAAAGACAAATCATGACCAAGATTCAAAGATTTAATGTTCATCTTTTGTGGAGTCCTAAAGTGAATGTCCACAGTGCAAATTATAATATTCTTCCATCTAACTCTCATAATCTACAGTATGTCAATATTAATGGTGCTTATGGTTACTGCTTGGTTTTAAACACACATTTTTAGACTAGCCTATTGTTTGTGTACTAGGGCTGTACAGCAATCTGTATAAAACAGGCTAATGTCAATGATACAGTTCTGTCAATTACTGTATTCTAGTTTAAGCTGTCCACTTCCACACTGTTATAGTGACAATCTTAACTGTAGGCCTACCACCTTTTATTGTTCTGTTGGTTCATGTTTGATACACTCGTTCTGTTTTTAAAGCATGGTTTTAATAAATCTTATGGTGATTTGAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609822.2 False 1616 mRNA 0.41 3 57056404 57058621
XM_036983600.1 False 1527 mRNA 0.41 3 57056404 57059527
TU713380 False 617 TUCP 0.50 4 57052191 57058570
TU713377 True 3581 lncRNA 0.43 3 57054388 57058570

Neighbor

gene id symbol gene type direction distance location
phf13 LOC106583125 coding downstream 9941 57036803 ~ 57046463 (-)
LOC110528035 LOC106583131 coding downstream 39128 56881331 ~ 57017276 (-)
vamp3 vamp3 coding downstream 186797 56853567 ~ 56869607 (-)
psma5 psma5 coding downstream 250391 56796848 ~ 56806013 (-)
sort1a LOC106583135 coding downstream 259800 56772815 ~ 56796604 (-)
cdc42 cdc42 coding upstream 207915 57267442 ~ 57305408 (-)
LOC110528043 LOC106583121 coding upstream 346220 57405747 ~ 57441999 (-)
LOC110528045 LOC106583117 coding upstream 402393 57461920 ~ 57541619 (-)
LOC118965302 NA coding upstream 459701 57519228 ~ 57523173 (-)
klhdc8a LOC106583114 coding upstream 474750 57534277 ~ 57565272 (-)
G627381 NA non-coding downstream 21415 57032850 ~ 57034989 (-)
G627432 NA non-coding downstream 33631 57021889 ~ 57022773 (-)
G627408 NA non-coding downstream 68692 56984344 ~ 56987712 (-)
G627346 NA non-coding downstream 151626 56904400 ~ 56904778 (-)
G627477 NA non-coding upstream 56763 57116290 ~ 57117047 (-)
G627505 NA non-coding upstream 84867 57144394 ~ 57201631 (-)
G627555 NA non-coding upstream 178061 57237588 ~ 57237990 (-)
G627563 NA non-coding upstream 229924 57289451 ~ 57298281 (-)
G627617 NA non-coding upstream 293554 57353081 ~ 57353669 (-)
G627323 NA other downstream 204103 56846962 ~ 56852301 (-)
G627314 NA other downstream 221312 56834350 ~ 56835092 (-)
G627254 NA other downstream 360313 56691323 ~ 56696091 (-)
LOC110528020 LOC106582955 other downstream 1622332 55420466 ~ 55566988 (-)
G628575 LOC106579815 other upstream 812523 57872050 ~ 57873331 (-)
G628714 NA other upstream 1057663 58117190 ~ 58118122 (-)
LOC110528069 LOC106583062 other upstream 1366648 58425680 ~ 58437154 (-)
LOC110528083 LOC106583085 other upstream 1632290 58691817 ~ 58695856 (-)
sfrs3 sfrs3 other upstream 1648045 58707572 ~ 58713630 (-)

Expression


Co-expression Network