cdc42 (cdc42)


Basic Information

Item Value
gene id cdc42
gene name cdc42
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 57267442 ~ 57305408 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609823.2
ATTAACATGTCACGCATTACGTTCTACGCACGTGCCCCTGCACTTTTGACTAGAAAGCCCCTAGCGTGAACCTGCCAACGCCCGCCGCAGAGACACAAATAAAGAGGATACGATCTTGAATGAGTAAAGAGGATTCTAAAGCACAGCTATGCAGACGATCAAATGTGTTGTGGTGGGGGATGGAGCTGTGGGTAAAACCTGTCTGCTCATCTCCTACACCACAAACAAGTTCCCCTCTGAATACGTACCCACGgTGTTTGACAACTATGCTGTAACTGTAATGATAGGAGGGGAGCCCTACACCCTGGGGTTGTTTGACACTGCAGGTCAGGAGGACTATGACAGGTTACGGCCTCTGAGTTACCCCCAGACAGACGTCTTCCTCGTCTGTTTCTCCGTCGTATCCCCCTCTTCCTTCGAAAACGTAAAAGAAAAGtgggtTCCAGAGATCACCCATCACTGTCCAAAGACCCCGTTCCTGTTGGTGGGGACTCAGATAGATCTGCGAGACGACCCGTCCACCATAGAGAAGCTGGCCAAGAACAAGCAGAAGCCCATCACTCCTGAGACGGCAGAGAAACTGGCCAGAGACCTCAAGGCTGTCAAATACGTTGAGTGCTCAGCTCTCACGCAGAAAGGCCTAAAGAATGTGTTTGATGAGGCGATACTGGCTGCGCTGGAGCCTCCCGAGCCCAAGAAGAAACGCAAATGTGTGCTGCTATGAGTGACTCCACCCCTCACACACATTTACACCActtcacacacaccctcacccGCCCATCCCATCCCTTGCTCTGCTAAGGCTGATTGACAGCCATTTACTCTGAAGCGAAGTATAAAAACAAACAACGAGTTTCCGATTAGACTGCAATAAACCAGCGGGCCGACGGATGGAGAGACAGAAGTGAACCTAACCCTGCTTGTAACCGTGACTATCATGGCCACACTCCTATTCCAGTTAGAACAGTAAGTATGAGCCTTTAGATGTGTGACAGACAACCCAGTCCTGCGTAATCCGTGCCTCTCAGTAGGctaaagtggcttcctctcctcatcttaaTCTACACTGATCTCACAGTAAAGTTAGTGAAAGCAATATGATGGATGCCCACTGAGCATTGGCTTTAAACTTCagggaaggagacaaggagaggcagTAACTATAGACTGAGATCCAGCCCTGCACTCAAGGGAAGGCCAAGACCATGTCCCTTTTTACTATCCAAAGGGTTTGAACCATGCCGGCAACACACAGGTGACATAGGCTCTCATAAAAGTGTCATCTCTCATAGGTGATTTAGGAAATCAGGCTAAACTGAACTTTGACTTTTAAACTGTCTTTGACATCTTGCCCTGTCAGTGATGTCGATTGGCTCTTAGTCATCCATCTTCTTTGCAGCCATTGGCCAGTTAGCCGTTCTGAAAGACCTATGCTCCACCCCCAAATGAAATAGCTGCTGCATTATTAATCCCCACCCCTCTTGATGAGCACGTCAAGTGCCCAATCCTGCTGCTCCACCTCCAAAACCACCTGAAGTAGTGCTGAGAGTAGCCTTTTTCTTTGCCAATGTCTCCCCTCCACATGACAGAACAGAAGTCTGATCATAGAAACTTCTTTCTCAAATATGCCCCTACCCCCGGGGCACTTTTGTAGATCTTAATAAACTGGATAGGGAAACATTTTATTACCATATTGTTCATACCTATCCAATCCTTtcagaactgtagaactgtactGTAGGGGAAGAGGCTAGGTGTAAATTAGGGACTGGCATTACTAAATATCTAAACTAAAGGCATCCCGTAGCAATGGGTCTTGATGCAGGAATTGGCCTTTTGAAGCAGGGAACATAAACAGTGTTAGCAGAACAAGTGGTGTGTGCTTAATGTGTTGCTAAGGTCCAACATTGTCAAAACGTTATGGTAACCATAGAATTAGAATTGGTAGAGCTGACATGCCCCGTTCAAAGCAACGTTCTATAGTAGGTACACCTGCGGCCATATTTTATGACCTATTTGAATTGTTAATTAATTGATGCTTATTGAATCAGAATTCTGTGCCACATCAGAATTCTGTGCCTTTCTCAGTGTTTCATACTGTCATGCTGCAATGGCAATGCTGTGGTGCTGCCATGATACTGTATGTGTACCTCAAAAACATCTGTGGTCTGAGGGATTTGTCTGTTCTATTACTTTTAATTCTATGGTGTTAACGTTGTCGAAATGTTGTTGAACCTGCTGGTGATGCATGTAGATGAGCCCCTGGTCTCTGAGATGATTGGTTAACAGATTTAATGATGTAAGCTGGCACATGTCAATGTAGGCTCCAGATATTTTTACCAAAATCGTTTTTTTCTTTTCAGTTGTGCGGTTTTTGATTTTATAAAAAGGTTACTTCCTCTCCTTTTACATTTTAGGGGCTGGAACTCAGCTGAACTCTGACTCACCAGCTAGAAACACTCATTGGAGTTCATTTAAACCTTCCAATGACAGAAGAGTGTCTGTTAAACCTGGATCGTGATTGGTTGATTTGACTGGTAGCTCAGAGTTGGGTTGACATGCAGCCCAAGTcatttattatattgttattattataaccTATCGTTGTTTTGGTGCAAAACCAAATGCTTTGTCTGACGTCTGTTCTTTGTATAtgcattctttaaaaaaaaatattaaacttATACCTTAATTGCCTTTA
>XM_021609825.2
ATTAACATGTCACGCATTACGTTCTACGCACGTGCCCCTGCACTTTTGACTAGAAAGCCCCTAGCGTGAACCTGCCAACGCCCGCCGCAGAGACACAAATAAAGAGGATACGATCTTGAATGAGTAAAGAGGATTCTAAAGCACAGCTATGCAGACGATCAAATGTGTTGTGGTGGGGGATGGAGCTGTGGGTAAAACCTGTCTGCTCATCTCCTACACCACAAACAAGTTCCCCTCTGAATACGTACCCACGgTGTTTGACAACTATGCTGTAACTGTAATGATAGGAGGGGAGCCCTACACCCTGGGGTTGTTTGACACTGCAGGTCAGGAGGACTATGACAGGTTACGGCCTCTGAGTTACCCCCAGACAGACGTCTTCCTCGTCTGTTTCTCCGTCGTATCCCCCTCTTCCTTCGAAAACGTAAAAGAAAAGtgggtTCCAGAGATCACCCATCACTGTCCAAAGACCCCGTTCCTGTTGGTGGGGACTCAGATAGATCTGCGAGACGACCCGTCCACCATAGAGAAGCTGGCCAAGAACAAGCAGAAGCCCATCACTCCTGAGACGGCAGAGAAACTGGCCAGAGACCTCAAGGCTGTCAAATACGTTGAGTGCTCAGCTCTCACGCAGCGAGGGCTGAAGAATGTATTTGATGAAGCTATCCTAGCCGCCCTAGAGCCACCAGAGACGCAAAGAAAGAGGAAGTGCTGTATATTCTAAAATCCGTTCCTCCTTTCTCTCAAATTGTTTGCTGCTTACTTTTAGTTTAAACCTGTCGTTTTACCCAACCAACCCAGAACCTCTTAAAGCAATCCCCTGTATCCACTCCCCCGTTATGACAGTGCTACTTTCTATTGTGTCCATTGCTCTTCCTTCCCTTTTTGTTTACTTGTCCTCATGGGCCTTACTGTGCCTGAaggactgttttggtttggtTAATCCCATCCCTTATCCTCCCTGGGTGAATCTCAAATGACATCCTGTTACCATAGTGGACAAAGTAGTGTACTTTCTGGGAGTTTGCATGTGatttgagacacagcccatgTCTCTTCTTTGGTTAgtgtttctcctcctccccatgcTATATTATTTGGAGAGTCCAGAGTTAAGGGAGTGTCTTATATACTTGGCTCCACAGCATTGTGATTTAAGCACCAATTCTACAAGCCTCCATGATTCCTAATGTTCATGTGTTTTTTGTACTACTGCTGATGTATGACAAGCCTGCGGTCTGACCATTTACATTTAGGGCTGTGCCAGAGCAACAGAGAGTTTGGCCATCACGGTTTCAACCAAGAAGCATTACAACAATGCTCTTTGATGATATCACGGCAGCCATGTTACAACCTTTTGGGCAGTACTGACCCATGGCAGACCATGGATTTTAAAACTTTGAAACCAAACTTGCAAAGGCAACCATTTAGAGCTAGAACCCAAATAGTAGGGGTGTAATGGTACATGTATTCATACCTAACTGTTTGGCAGGGTAACCTCAGTTCGGTCCGCACTGTGAACCCGAATTAATATATAAcgtatatttacaaaataaacactaggcctataggctatgtcTATGCTACGTTGAAGGCATATGCCTCTTCACGGTATCTGGTAggcgcgttgggccagtaaccgaaaggttgctggatctaatccctgagctgacaaggtaaaaaaaatctgttctgcccctgagcaaggcagttatcccaTTGTTCCCTGGGCGCAGAAGACTTGGATGTCGATTGAATCAGAGGTGCGGAGGGCTGTGTCTcaggttaaatgcggaagatgcgttgttgtacaactgactaggtatctccctttccctaAGTGAATCTGAGCTGAAAAAACACTTCAGTCTTCCATAAAATCAACTAAAGCTGATGCACGTGTTGTAATCCAAATTTGGCACATTTCAAACTTTCCTTTTGTGAGGCACAGCCGGGAACTAATTGGGTACGATGAGCACCCACTTCTCCCACATGGTGACCTCTGATGTCACCTACTATGGAAATGGCCTCTAACCGcagttaatttttttaaataaaaggcAATCTATTAATGTGGTTTTTGACCTTCATAATCTGTTTACAAGCATGATATCTGTAattttagtttatggttgacacAGCTTATTCGCCATAAGCCAATCTGCATTTCAAATCACATgtatttacgacttcacaactggtaaattcCTATTTTCCACATGGTTACAAATGCAGCATTAGTGGAAATGTGAAACGCCCAACAAAACAATCCATATCAAATCGtatcgtattggtcacatacatgtgtttagcagatgttattgtgggtgtagagaaatgcttgtctttctagctccgacagtgcagtaatatctaacaatctcacaacatatacccaatacacacaaatctaagtaaagaaatttaattaagaatatataaatggaTGACCAATGTCCAGTCACAACAAACAATGGAACATTGTGATTGCTGAATGCTGTGAATGGCATTTAATTTTTCTGTTGTAccgtgacaccccccccccccccccccccccccccaaacacactaTGTACCGAACTATGGGTTTAATGAACCGTTACACCCCTACCAAATAGTCATCCTGAATGGAATCCTCCAAGGCAGCACCATGCCGTCCAGCTCTAACAGGCCAAACTCTCTCTATGTACCACTCTGTAGTGCCATTTGCTGCAGTTCATATCTAGCCGTCTTGGgagtaaaaataaataagaaaGCTAATATAATCGTGTGAAATGATTTGTGACATGAATTAATAAAGGACAACTGAAATTGCTA

Function

symbol description
cdc42 Predicted to enable GTP binding activity and GTPase activity. Involved in cell surface receptor signaling pathway; positive regulation of cell migration involved in sprouting angiogenesis; and positive regulation of filopodium assembly. Acts upstream of or within several processes, including camera-type eye development; melanosome transport; and plasma membrane bounded cell projection assembly. Predicted to be located in midbody and plasma membrane. Is expressed in blastodisc; brain; eye; and pronephros. Human ortholog(s) of this gene implicated in fibrosarcoma. Orthologous to human CDC42 (cell division cycle 42).

NR:

description
cell division control protein 42 homolog isoform 2

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04393 CDC42; cell division control protein 42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609823.2 False 2701 mRNA 0.45 6 57267442 57305408
XM_021609825.2 True 2817 mRNA 0.44 6 57270386 57305408

Neighbor

gene id symbol gene type direction distance location
LOC110528040 NA coding downstream 207915 57052191 ~ 57059527 (-)
phf13 LOC106583125 coding downstream 220979 57036803 ~ 57046463 (-)
LOC110528035 LOC106583131 coding downstream 250166 56881331 ~ 57017276 (-)
vamp3 vamp3 coding downstream 397835 56853567 ~ 56869607 (-)
psma5 psma5 coding downstream 461429 56796848 ~ 56806013 (-)
LOC110528043 LOC106583121 coding upstream 100339 57405747 ~ 57441999 (-)
LOC110528045 LOC106583117 coding upstream 156512 57461920 ~ 57541619 (-)
LOC118965302 NA coding upstream 213820 57519228 ~ 57523173 (-)
klhdc8a LOC106583114 coding upstream 228869 57534277 ~ 57565272 (-)
LOC110528047 NA coding upstream 273637 57579045 ~ 57602101 (-)
G627555 NA non-coding downstream 29452 57237588 ~ 57237990 (-)
G627505 NA non-coding downstream 65811 57144394 ~ 57201631 (-)
G627477 NA non-coding downstream 150395 57116290 ~ 57117047 (-)
G627617 NA non-coding upstream 47673 57353081 ~ 57353669 (-)
G627714 NA non-coding upstream 209400 57514808 ~ 57517147 (-)
G627835 NA non-coding upstream 405079 57710487 ~ 57710845 (-)
G627323 NA other downstream 415141 56846962 ~ 56852301 (-)
G627314 NA other downstream 432350 56834350 ~ 56835092 (-)
G627254 NA other downstream 571351 56691323 ~ 56696091 (-)
G628575 LOC106579815 other upstream 566642 57872050 ~ 57873331 (-)
G628714 NA other upstream 811782 58117190 ~ 58118122 (-)
LOC110528069 LOC106583062 other upstream 1120767 58425680 ~ 58437154 (-)
LOC110528083 LOC106583085 other upstream 1386409 58691817 ~ 58695856 (-)
sfrs3 sfrs3 other upstream 1402164 58707572 ~ 58713630 (-)

Expression


Co-expression Network