LOC110528052 (LOC106583108)


Basic Information

Item Value
gene id LOC110528052
gene name LOC106583108
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 57782135 ~ 57789159 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609838.2
GCTGAAGACAGGTGTGTTACAGGTGTGTTACCTCACCACAGGTGCGACACACATCACAACAGGTGTGTTACCTAGGTCAATTTCTGATTACGCCTATAATTGCGTGGCTTATCGGAaacgacacgcacacacacacaggacttaCTTCCTTCTGAGAGTTGACAGACATAGGCACATGAGGAGTGGACAGAAACAGCTCTACGAGTGACCCAGAGGAACGTTAGACTGGCCCATGTTTCCATATGTGGATTTCTCTGTCGATTGGCAGAGTTGAGTTAACTACACCTACACTCACCAGGCATGACCACAAGACTGGAACCCTTTATCTTCACTGACCCTTCTCTACTACCTCCAtaggacagagagaaatagaCGGAGCTAGACATACAACTCTCCCACTATCTGTCTGCCAGAAGTGCAATGTGAGTACAGACAACACTATACATGGGGAAGCCATCCAGTCAGCTATCTTGTCTGTTATCCACTATCTTGAGTAAAGAGACATTGGGACCTCCGGACAGCAGCATGGGACACAAACACCAGCCTCCTTTCACTCTGCCCCACATACTCATTTACATACGCAGGTCACTCAAGGACTACCCCCTGTAAGCCTAGACCCTTAGATTACATGGATAGAGAAGAGCATTCTGTCCTGTCCACACAGTCACTATAAACTCCTGTATCACAGTTGTCTCAGAAActgtgtgggagagagacagaaagtagGGAATAGACCAGAGAgcgagatagatagatagatatagaggtATAGACAGAGGAAGCATCTTTGAGTCATGCAGGGCCGTGTGTGTCAGCTGTTGCTGGTGAATGCTTTGACCTGTGGTCTGGAGGTGTGTATGGCTGCAGGGACCTTCTACATCCCCCCTCTACTGCTGCAGGCCGGCATGGAGGAACGCTACATGACCATGGTGCTGGgagtgGGTCCAGTTCTGGGTTTGATCTTCGTGCCCATGATCGGCTTGTATAGTGACTCGTGGCGTGGACGTTTCGGTCGGCGGCGGCCATTCATCTGGCTCCTTTGTGTGGGGATTCTGCTGGGCCTGCAGGTGATGCCCCAGGCCTCTCACCTAGCTGCCTTGCTCTACCCACAGCACCCCCGCTGGCTGGAGAGGGTCCTGCTGGCAGGGTCAGCCTGTCTGCTGGAGTTCTCTGGGCAGGCCTGTTTCACTCCACTGGAAgctctgatctcagaccagtttccaggagaggaggagagcagaaggGCCTTCTCTGTCTACTCACTGATGATCAGCCTGGGAGGATGCCTGGGGTACCTGCTGCCAGCCCTGGACTGGAGCCATGCCCCGACAGCAGCCTACCTGGGCGGCCAGGAGGCCTTCATCTATGCCCTGCTCACCCTCATCTTCCTCACCTGCCTCCTCAGCACAGTCTTCATCTCAGAGGAAAGATACaccagagggggagagacaaCTAGGAAGGATCTTAGTGTTAGCTCCGGCCTGAGCCGATACTGTGCACACTCCTTGCTGCCGCGGCCTCAGTGTGTGCGGCTGGCGGTGGGGCGGagtgtgtcgctgtgtgtgtcGGCGCTGCCAcgcatgtacagtgtgtgtatgcaCGTGCCGGCAGTCATACGCAGGCTGTTTGTAGCCGAACTGTTCAGCTGGATGGCTCTGATGAGCTTCATGCTGTTCTACACAGACTTTATGGGAGTGGGGCTGTACCGGGGAGTACCCAACGCTACACCTGGAACACAGGAGAGACTACGATACGATGAAGGTGTGCGCATGGCGAGTGTGGGTCTATTCCTGCAGTGCCTGACCTCAGTGGTCTGCTCCATCCTGATGGAGCATTGGATAGTGTTGCTAGGCACCCGGGCTGTGTATGTTAGCAGTGTGGTCCTGCTAGCGTTAGCTACAGCTGTGATGAGTTTCTCAAAGAGTGTAGTGATGATCACTGTCATGGCCGCAGCTACTGGATATACCTTCTGTGTGCTGCAGGTCCTGCCCTACACCCTGCTGTGTCTGTACCACTCTgacagacagGTCTTCttctccagttccaaatccagaCCTTCTCACCCAGGAGATAGTGATGACCACATTCACTCCAAGCCCCTTGTTCCCCCTGACTCCGTCCACATCCATGGCAACAGGTATCCAGAGGGGGTCAATCTCCCCGgggctccccttctctcttcctcctccacctccccccacGTGTCCCttcccctggagagaggagagcccATACCCCTGCCTCAGAGAGGGATGTGTCTAGACATGGCTATCCTAGACAGTGCCTACCTGCTTTCACAGGTGCTGCCTGCTCTGTGTCTGGGCTCCATAGTGCAGCAGTCTCACAGTGTCAGTGCCTATATGGCCTCAGCCTGCTCCCTCAGCATCATGGCCATGCTCTGCTCCACCTGTGTCATCTTCACACGCAGTGACCTCCACAAGCTCACAGGGTCAAAGGACAGCGCTCCAACACTGACGGGGCTAAAGAGTTAACCCATTGTGGATGTATCTGTGTTGTGAAATTGCAGATTGGAGATTCTATTGGATTTTGTCTGTCCATTATCATCGAATGGAATCCGGAATCCTGTAGAATCCGGTATGGAATCCTGTAGATTGCAAAATATGCCATCTGACTCCTCAAATGCATCAGGGGTTAAAGAACCAAGGGTGGATGATTGCAGTCCTGATATCAGCACCTCTAAGACTGACTGAAAGGACAGGTACTTCTTGTTTAGTGTGCTGGCACAACCAAGAGAGTAGGTCAATCCTGGGAAACACTGTAATGGACAGTAAAATAGTTTTCCTTCCTAGATTGGTCACCACAGATGCTTCAAGATATCAGGGGGAATACTGAGACAGGCTACTATTCCTCTGACACAATAAAGGAGGATAAAGTGATACTGCTTATTGCCATGTCTGAAATGTATTATGTTTGCTATTGGTTACTGCAATCTAACATGTTTCAAAGTACACTTTGTTCACTGCTATAACTAAAATGTTGCATGATTGCTATCTAAGGCCATGAAAGTATTCTGAAGTCTGTTGTGCATTTGTGTACAGTAAGTTTACTAGATGTATATATGGACATATGTATTTATGTGAGCCCCAGGGCCAGAGGGAAAGTTGGGGTATGACTCCCACTCTGCTATTTGCATTGGGGTTGAGGGGTAAGGAGGAGAGgtgatgtgtttttgtgtgtgttttcccccCCATGTTTCCATTGTAATGATAaatcctagtgtgtgtgtgtttggggggtcaGGGGACTCCTCTCAGTGTGTCTGATCCAATGACGTATATAAATCCTCGACTGacgatgctatgtattggccattgagaggctttgaagccagtAGGCCATATTGGCAttccccagtaggagcagtcctccatagagatgaatggaattctacagtatttcaattaaatgtttcaaggacaaaattacattaCATTTAAGTATTTTGTTGTCGTACTGGGGACAGTAATATTAGTaccaaaaaaaactttacggtaaatgttttatatattttttcattttttatctTTGTTTAATGCACATAATatatttaaaagtatgcattcaggtgtctgtaatagaataaacatGTCAATTGAGGAGTGCCATGATGGCTGCCCGGTGGCTTCTATACAGCACCAGGGTTTTTAAACATCATTGGTCTGATCTGATCCTGCTGTGCTCTGTTGCTAGGGAAGCTATCTGGATCCACTCTCATAAGGAGTGCCATATGTAACACAGTACAGTTAAATACAGTACAATATGAAGATAGGCTAAAACTGCTTCTCTAATAGAAATCACCAATCACACTTGTGGGTGACTTTGGCTAGCGTAAAAACAAGTCATCGGGTCTAACGGTTGTCTCGCACCAAACTGTTTGTCACTTTCATGAGGTTGGAGGAATAACGTGTAACTATTTAAGACATTGGCTCGACTCTGTTGTggctttagatttttttttaaatgaacaacTAAGAAATTACCTCTACCTTTTCAAACCCCTGCCTAGTCTCTTGTCTGTTTTGCAAGTGTTCCCGGAAGTCTCTTGATGTTGAGCTTCTGGGTTTAAAATCTCTGTGGTACAGTACTAGCAGAGACTCCTCTTCAATCTCACTTGTctgtcatgtacagttgaagtcggaaatttacatacaccttatccaaatacat
>TU714006
ACAGACATAGGCACATGAGGAGTGGACAGAAACAGCTCTACGAGTGACCCAGAGGAACGTTAGACTGGCCCATGTTTCCATATGTGGATTTCTCTGTCGATTGGCAGAGTTGAGTTAACTACACCTACACTCACCAGGCATGACCACAAGACTGGAACCCTTTATCTTCACTGACCCTTCTCTACTACCTCCAtaggacagagagaaatagaCGGAGCTAGACATACAACTCTCCCACTATCTGTCTGCCAGAAGTGCAATGTGAGTACAGACAACACTATACATGGGGAAGCCATCCAGTCAGCTATCTTGTCTGTTATCCACTATCTTGAGTAAAGAGACATTGGGACCTCCGGACAGCAGCATGGGACACAAACACCAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609838.2 False 4188 mRNA 0.48 8 57782135 57789159
TU714006 True 384 lncRNA 0.48 2 57786960 57788998

Neighbor

gene id symbol gene type direction distance location
LOC110528051 LOC106583109 coding downstream 23604 57752075 ~ 57758531 (-)
LOC110528050 LOC106583110 coding downstream 52818 57712894 ~ 57729317 (-)
LOC110528047 NA coding downstream 180034 57579045 ~ 57602101 (-)
klhdc8a LOC106583114 coding downstream 216863 57534277 ~ 57565272 (-)
LOC118965302 NA coding downstream 258962 57519228 ~ 57523173 (-)
LOC110528053 nucks1 coding upstream 5616 57794775 ~ 57805268 (-)
LOC110528056 LOC106583106 coding upstream 332397 58121556 ~ 58138678 (-)
LOC110528058 LOC106583105 coding upstream 390699 58179858 ~ 58192254 (-)
LOC110528061 mfap2 coding upstream 444297 58233456 ~ 58239552 (-)
LOC110528062 LOC106583101 coding upstream 453538 58242697 ~ 58253037 (-)
G627835 NA non-coding downstream 71290 57710487 ~ 57710845 (-)
LOC110528045 LOC106583117 non-coding downstream 240516 57461920 ~ 57541619 (-)
G627714 NA non-coding downstream 264988 57514808 ~ 57517147 (-)
G627617 NA non-coding downstream 428466 57353081 ~ 57353669 (-)
G628011 NA non-coding upstream 72769 57861928 ~ 57862168 (-)
G628013 NA non-coding upstream 74200 57863359 ~ 57863604 (-)
G628018 NA non-coding upstream 76763 57865922 ~ 57866160 (-)
G628592 NA non-coding upstream 110643 57899802 ~ 57954090 (-)
G628649 NA non-coding upstream 208692 57997851 ~ 58005983 (-)
LOC110528040 NA other downstream 723565 57052191 ~ 57059527 (-)
vamp3 vamp3 other downstream 912684 56853567 ~ 56869607 (-)
G627323 NA other downstream 929834 56846962 ~ 56852301 (-)
G627314 NA other downstream 947043 56834350 ~ 56835092 (-)
G627254 NA other downstream 1086044 56691323 ~ 56696091 (-)
G628575 LOC106579815 other upstream 82891 57872050 ~ 57873331 (-)
G628714 NA other upstream 328031 58117190 ~ 58118122 (-)
LOC110528069 LOC106583062 other upstream 637016 58425680 ~ 58437154 (-)
LOC110528083 LOC106583085 other upstream 902658 58691817 ~ 58695856 (-)
sfrs3 sfrs3 other upstream 918413 58707572 ~ 58713630 (-)

Expression


Co-expression Network