LOC110528053 (nucks1)


Basic Information

Item Value
gene id LOC110528053
gene name nucks1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 57794775 ~ 57805268 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609839.2
TTGATGCTCTCCTCTCAGCGGCGACGATGGGCGGTCTTTTATGCCAAGGGCCACTAGGTTAGGTTGCGCATAGGCTGCAGTttcagtttgttttattcaccaTTTTGAGTAGCTGAAGGTAAAAAATTAAACTAAAATCGCGTTTGGAAGACAAATCGTTGCCTTAGATTTAGTTTTACGCTGTAGCCGGGGCGTTGGAGTTGGAAGGTCTCGTTGCGCCCTTTGGAGTTGCAGAGCGGGAcgattttgtttttatttttctagATTTCCTTTCCCCTTTCTTACATTCTTAACCTCTACAGTATTTCTGCAAAATGTCAAGACCAGTGAGGAACAAGAAGGTGGTGAATTACTCCCAATTCCAAGAGTCTGATGATGCAGATGAGGAGTATGGGAGGAACTCAGACAAGCCTAAGAAGCCTCGTGCGGCTCCTCGTGAGGTGAAGCGCAAGCGGTCAAAGAACTCTCAGGAGGACAGTGAGGATTCTGATGAAAAACTCTCAAAATCCCAAAATGATTCAGCAGATGACTTTGGCAGTGAGGAAGGCAACGACTTTGGAGAGGAGGATGACGAGGATGGAGGGAGTGACTTTGAAGCTAAACGAGGGAAAAAGGGAAAAACAGCCAAGGTGGCAAAGCCCACTAAGAGGACACCCAAGAGAAAACGGCCTGCAGATGACAGTGATGAGGAGGTGAGCCGTAAGGTGCGTACGGTGCGCCAGGCTGCCACCAAGGCCGTGTccaaacagagagagatcctGCTGGGAGACGGGGGCAGCGAGGACGAGGAACGTGAAGACAAAGAGGAGGCCTTCCCAGACCctGATGAGTCGGGCAGTGATGAAGACTTCATggttgaggatgatgatgatagtgactACGGCCGCTCCAAGAGCAAGAGGAGCAGCAAGAAGGTGATCAGACGGAGCAggccggagaggaaggagaagaaatCCCCCAAACCAAGACTAAAGGCCACCGtgaCCCCGAGCCCAATGAAAGGAAAGGGTAAAGGTCGCTCAAGCGCCGCCAAGGCCCCGGAGAAGAGCTCGCccaaagaggaggaagaggaggagccagAGAGCCCtctggaagaggaggaagaagaagaggaggaggaggtggtgaagaAAGACTCCTCCCCCGCTCCCAAGAAAACTAAGGAGGTACCTGGGAAGGAGAAGAAGGAAAAGGAAGacgcagaggaggaggaggaggaagaagaggacggtTCGGAAGAGGACGCGCCCTCTGGGGAAGACTAGCCCCACAGAagttccacctctctccccttccacatCCTTCTCTCTTAACCTtacgttttttgttttgtttctcttgGTTTAGAGGGTTTTATTTCGGTTTCCGTGGTGGCCTGGCTCAATGGTTTGAACCTCGTGGTGTTGTTGTTTAGTGTTAGTTTTTATCTTCCCCtaatgaatgactgactgactgacttaggACAATGTCTGTGCATGAGAACATGTATACCACCATATGGCTGtgagggatggaaggaaagaACATGTGAGATTTGACTCTCTGTCCCATCCACTCCATCACTGTCCACTCTGCTCAGCTACACCTCCACTGGCTCACCTTTCCTCGCATTTCTCATCTCCTTCTCTGCAGTGACTGCATTAGTCTTTCCTATACAAGTCTGTGTGAATATCAGAAAACAGTTTATTTCGGCTTTGTTAGTTTGCCTTTCTGAGAGCTCAGTGCTAGTATGGATCCGTCCTCGACAGTCGCTTGGTGTGTAGAGTCATTAGTTTTCtctctgcaggtgtgtgtgtgcaagtgggCCTTCTATAAAAAAATACACTTTCTACAGCCATTTTCTTTCTACTCCTGTCTCCGTCCCCTTCTCCTCAAGTAATCTCTGGTCTGACATGACTGGATAGGTGCAAGCAATGTAGTGTAACCCTTGCTTTTGCCTATCCAGTAGTGTTAGATCAGGGATTACTAACTGAGCCCTGGGTTTGTTCAgttagtctgggttagggtctccctctccatcctggTTTGTCAGTGGACTGCTGGTGTTCAATCAAAGCACTTTATTCACTGTGCAACACTACCCATTGGTTCAGTCGGAACCCACCGCTGACGAATCAGAGAGGGCCACACTGGAGACTCTTGAGGGAGGATATGatgtctgtgtttcctgtctattTCCCTGTATCTAGATTGCCCTCACTGAGGTACTCGGCCAACTAACCCCATAGCACTGTGCAGACAGACACTGTGCTTTTGAAACTCTCTCAAACACAACACGTTTTAGCAGGAAGGTTTTATGGTTGTTATTTTAATGTTAATTTAGTTGAATTAATGCTCTGTTATATTTCCCCTTACTCTGAGGTTATGCCCTGGTCCTGTGTCAAGGCCCATCAGTTTAACACATACACAAAGCTTGTTTTGTTATTGAATATGTAACGGTTCAGTAATGTGCTAGAAGGAACAGAGTTGAAGATCACTGCTTtgcagtagcagtgtgttatTGTGCTTTAGACAGAGTGAGTGCTCTGAGCTTCTGCTATGAGCTGTAAACGGTTAATGATGTGGTGATTGAGGGGGTCATGGAAGCAGATCCTGGATCAACCCTCAGAGACCCTCTTCTTCGTGTGTCTTTACCGTGTGCTGGTATTACTACAGTGCAAGGGTGTGATGGAGCACACGCTTAAGGGGTTTGGTGTTTCCTCACCCTTAGCCCTCTACCTTTTGGTTTGTGGTTCAGAGATGTTAGATGCTTTGAATGCCTCTGCTGGGCAtgatacatacacacagaacatccTCTCTTGTTCAACCCTTTGTGCCAGGCATCCCGAAGCTTTTTTAAATTGACTTGAGAGTGGGGGGTTTTTTTGAGTCcccaaattgatttttttttttttttttttttggtttgctCTACTTCTCTATTCAGATTTTTttgtaatgtttgttttttaagaaAAGAAATAAAATTTATCTTGATTTTAAAGAAAAGTTGACCCTATCCATCTGTTTTTCTGCTGTGTTATAACTGTCTGGGAGAGCAGACCCAGCAATCCCTCCTTTCTGTTCCACTCACTTCCTTTCTCTCATTCTATTCTCATCTCCTGCTCCTTCACTCAGTTCATACTCACTCCCTCTTTCACAGAAGCTTGATGCCAGCTAATGTTTTGCTCCAcacctctgctctcctccacAACCAAGAAACACTAGCTGTATTTCCCCTACTCTGCCCTGCAGAGATCTGATATGACTGGATAGGTGACAACAATATGAAGGAATATAGGTCAAACCACTGCTTATGCCTTCCTTGTTGTTTCTGATCTGCAAATGGTGCAGAGGTGAGAGACAGCATGAAATGAGTGCTGTTTTTCAACTCCTCCCTGGGTTGAAAAACTTTTGAGCCAAACCTATGGTATCAAAAAGTGTTCTTGGTCTATATGGATTCATTATTGTTTTAGCTGAGAATGAACTCTACCAGTTATTAAAACGAGTTTGGATGCTTAAAGATTGAATCTGTTTCTTCTTGCCTTATTTTCCCTTGGTCCTGCTGAACTAGAGGAGGCACTGTATGGTGTGATACATGTGGATTGGAGGGGATTTTATTGTGTTTAGGGTGAATACTAAACCAATCCCTAGCCCTCTAATCCTCAGACAATCCTGTAGATCTGAAATGATTCCACCCAGTCTGCAGTACTGCCTAGGGCATTAGGGGTCACTTTGAACTTCAGCAAATGACTGCTCTGCCTCTTTGGTGATGACCAACCGAAGCCATAGATCTGACATAGAAAAAgatgatgggggagggggggtgtctGACATGTAATCAAAtaaaatacctagctgaccaagATCGACGCTTTCATACCAGGGGAggactgtatgtatatattttgttAGCCTATCCTTCAGGCCCAATGATGTGTTCTGACCAATACCAAATCACTCAAGACCCCAAGACTGCAAACACATGCCCTAGAAGCTGTTTGAGCAGACCCAAACTGACCCTGGTTCTGGTGCACTTTCACTGTTACCCTCCTGACTGCAGTGGATACGTTTATTTGCCTAATTCCAAACTGACCCCTAGCCCTTTGACCATATTGAGTATACCTATTCAATCCTTTTCTACATAAAGGCCTTGGGGTTAGGAGTTCATTTAGTGTGGTCATCTTAGTATAGGGCTTCTATCATATTCCTGAATGTCACTGAATGCTTGTACTGTATGGAGTTTCTGTGTTCAGGCAGCAGGGGCTCCAACACAGGAATATGAGATCCATACTGCTGGGCTTTTTTATGCTCGATAACCGAATGActgtcccaggtctgaatcagGCCCTTAGTAGAGGGGAAAGATGAAAACAAGCAGTGCTCTGGACCTCCAGGCCCAGATTTGAATCCCCCTGTTTAACATGAAGACATGGATTTGCTCTTACTTTCCTATGCTTTCTTCAGTATCCCTGCATTTCTATTTCTTTTCATTAATATTTTCTATTTAGCTTACATTTACATTGCTAGTACAATTTAAGCAAAATTGTGATTCTTACAGGTGATAGCGCCGAGAAGCTTTTGTCAGTGGTGTGGAAAGGGAACGTTGAACTGTTGAATCTTTTGCATGTTGTGGAAAAGTGAgcagtgatgatgatgaagaaaACAATATTGTGGTCTTACAAAATATTAATGACAACAATGATGTTGACGATGTTTTGGTTTCCCGGCTTCTAATAAAGGCAACCTACTTTTTATATGGA

Function

symbol description
nucks1 Enables chromatin binding activity; double-stranded DNA binding activity; and transcription coactivator activity. Involved in several processes, including DNA metabolic process; cellular response to X-ray; and modulation by host of viral process. Located in chromatin; cytoplasm; and nuclear lumen.

NR:

description
nuclear ubiquitous casein and cyclin-dependent kinase substrate 1-like

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609839.2 True 4742 mRNA 0.45 8 57794775 57805268

Neighbor

gene id symbol gene type direction distance location
LOC110528052 LOC106583108 coding downstream 5616 57782135 ~ 57789159 (-)
LOC110528051 LOC106583109 coding downstream 36244 57752075 ~ 57758531 (-)
LOC110528050 LOC106583110 coding downstream 65458 57712894 ~ 57729317 (-)
LOC110528047 NA coding downstream 192674 57579045 ~ 57602101 (-)
klhdc8a LOC106583114 coding downstream 229503 57534277 ~ 57565272 (-)
LOC110528056 LOC106583106 coding upstream 316288 58121556 ~ 58138678 (-)
LOC110528058 LOC106583105 coding upstream 374590 58179858 ~ 58192254 (-)
LOC110528061 mfap2 coding upstream 428188 58233456 ~ 58239552 (-)
LOC110528062 LOC106583101 coding upstream 437429 58242697 ~ 58253037 (-)
LOC110528063 LOC106583099 coding upstream 461467 58266735 ~ 58276595 (-)
G627835 NA non-coding downstream 83930 57710487 ~ 57710845 (-)
LOC110528045 LOC106583117 non-coding downstream 253156 57461920 ~ 57541619 (-)
G627714 NA non-coding downstream 277628 57514808 ~ 57517147 (-)
G628011 NA non-coding upstream 56660 57861928 ~ 57862168 (-)
G628013 NA non-coding upstream 58091 57863359 ~ 57863604 (-)
G628018 NA non-coding upstream 60654 57865922 ~ 57866160 (-)
G628592 NA non-coding upstream 94534 57899802 ~ 57954090 (-)
G628649 NA non-coding upstream 192583 57997851 ~ 58005983 (-)
LOC110528040 NA other downstream 736205 57052191 ~ 57059527 (-)
vamp3 vamp3 other downstream 925324 56853567 ~ 56869607 (-)
G627323 NA other downstream 942474 56846962 ~ 56852301 (-)
G627314 NA other downstream 959683 56834350 ~ 56835092 (-)
G627254 NA other downstream 1098684 56691323 ~ 56696091 (-)
G628575 LOC106579815 other upstream 66782 57872050 ~ 57873331 (-)
G628714 NA other upstream 311922 58117190 ~ 58118122 (-)
LOC110528069 LOC106583062 other upstream 620907 58425680 ~ 58437154 (-)
LOC110528083 LOC106583085 other upstream 886549 58691817 ~ 58695856 (-)
sfrs3 sfrs3 other upstream 902304 58707572 ~ 58713630 (-)

Expression


Co-expression Network