LOC110528056 (LOC106583106)


Basic Information

Item Value
gene id LOC110528056
gene name LOC106583106
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58121556 ~ 58138678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609843.2
ttttcttcttattttTCTTATCCATCGTTCAGCCCTCGGAGTGCGGAGCATGCAGAGAGAttgttgatgagagagagagagagtaaggagaaaCCATGCAGTATCTGAGGCAACCCAGTGAGCCCAGTGACCGAGCCTGACAACCTGATCCCCCCCGGACAACCAGGGAACAGCAGTCTGGTCAACCACAAGACccggtgacacacacacatctccaactggagaaagagagagaaaaataggaaaagagagaaagagagggtagaccaccagatgtgtgagagagagcagagagaaggagatgctCAGAGGGACCGGACAGTGACCAGGAAGGAGAccataggaagagagagaaaggagtgcgACCACTGACAAAACACATGGGGTTGTATTGAAATCTGGATTGTTTGTAAAGTGGTGTTTGACTTTTGGTTCTGTGCTTCTGTTAATCTGAGAGACAACAGGAGTTCTGAGAGAAAGTTCTGTGGTACGTCCTGCCTACAGTACTGCCTCTTTGTGGAAGCACTGCGCTACACGACTGCTACAGGTGTTCTGAAGAGGTCCAAATATTCACCTAAGAGAAGGAGCACAGAAATAGGACAGACACATAGAAAGGAACATAGAAAGAACACAGAAAGGAACATAGAAAGAACACAGAAAGGAACATAGAAAGAACATACAtttagaaagaaagaaaaaaatactTCAGAAAAGCCCAGAAGAACaaagagggtaagagagagaataacaggtctagagacagacagaaacagatagaCGAAAAGACAGGATGGCGAACTCGGGTTTCCAGTTGCTAGGTTACTTCCTGGCATTGGGTGGTTGGATAGGCATCATCTCCACCACTGTGCTGCCCCAATGGAAGCAGTCTTCATACGCGGGTGACGCTATCATCACGGCTGTGGGGCTCTACGAAGGCCTGTGGATGAGCTGTGCCTCACAGAGTACGGGACAGGTGCAGTGCAAGGTGTTTGACTCCATGCTGTCACTGGACGtgCACATCCAGACGTGTCGTGCTCTTATGGTGGTGTCCGTGCTGCTGGGCTTCATAGGAATGATAGTGAGTGTGGTGGGGATGAAGTGCACTAAAGTGGGCGACAACAACCCCATCTCCAAAGGACGCATAGCTGTGTCTGGAGGAGCCCTCTTCCTGCTCGCAGgTCTGTGCACGATGGTGTCTGTGTCCTGGTACGCCACTCAGGTGTCCTATCAGTTCTTCAACCCAAACACGCCAATCAATGCCAGGTATGAGTTTGGGTCTGCCCTGTTCGTGGGATGGGCGGCGGCTAGCTTGACTGTTTTGGGCGGATCCTTCCTGTGTTGCTCCTGCTCCAATGAGGAGAGGCGAGGGCAGCAGTACTACCGCCAATCACAACCATCCACAGCCAGGGAACCAAATGTTAAAAGTTCCCCACCAGAGAAAAAGGAGGAATACTTATAGTTTGGGCGACTCCTTTGGCCCCACGATGTGTTAGATTGTTGGCAAAAGGCAAGAATCTGTCTAACAGAAACAGACAAGACACTGTCTCAATGAAAACAAAAGCAGACAAGACACTCTATAGGAAACACACTCTCAGAATGTAACAAAATAAACTCAGAATACACTTTTGAAGTAATACATCTCCAGACCAGTATTTTATCATTCTTAAAGATGCCCATGTGttaaatgtttaaatgtattttagaaTCTATTTTGTACTTTATAGTATTTTATAGTAGAGTGTTGTTACAGCAATATGCACAGGTATTGTCCGTGCTCACCTATGACATATAACTGTTATTTGGAAAATTGAGAGTGAACCTGATTCTGTACTACTACACAGAAGTGCCCAGGTGCATATACCACCACCTCCAGCCTTTCTGCTACATATATGCTCTACTGCAGTGCCTTataacgtgtgtctgtgtgtatgtttttgaCTGTTATACACGGATTCCGCAGTGTCACATCCTATATGGATGATGCATATCGTACCCGTATTGTAAAACATATCCATGCTCGTCTTTTTCTCTTGCATTAAATGAACCATTCAGACAAACTGTTGCATGCAGTTTTATCTCGGAACATAGATGTACTGTAGCTAGTATACCACTTAAAAAAcaacagaaagacagatttgtaaATGGCCCTAACTGATGAAAGCGAAGGCACACCTTGTCAAAGCTGTGAGCCTGTTTGGAAGTAGTACATGTACTGTATCCCGGATTGAGGTTATTATACCTGCATTCTGTTTAGTTAAGTGCCAATATGATTTATTGTGGATGGAAGAGATGTTTTGTTAATGACTATGGAGGATATTCTGTACTCCAGGTGCTGAAAGCACTGTCTCCCGTACAAGCCCTGTATTGGCCAGTTTGCAGAATGTAATCAGGTCAATCGTGTTTTTCTGTTGCATACATTTAGTTACCATATATTTTCTTGATCTAATATTCActattattattttactgtatGTATCATCTCATTTAATGTATACTCCTGTCTGTTTCTTTTAGAATAAAGTAAACGGATAAAAA
>XM_021609844.2
ttttcttcttattttTCTTATCCATCGTTCAGCCCTCGGAGTGCGGAGCATGCAGAGAGAttgttgatgagagagagagagagtaaggagaaaCCATGCAGTATCTGAGGCAACCCAGTGAGCCCAGTGACCGAGCCTGACAACCTGATCCCCCCCGGACAACCAGGGAACAGCAGTCTGGTCAACCACAAGACccggtgacacacacacatctccaactggagaaagagagagaaaaataggaaaagagagaaagagagggtagaccaccagatgtgtgagagagagcagagagaaggagatgctCAGAGGGACCGGACAGTGACCAGGAAGGAGAccataggaagagagagaaaggagtgcgACCACTGACAAAACACATGGGGTTGTATTGAAATCTGGATTGTTTGTAAAGTGGTGTTTGACTTTTGGTTCTGTGCTTCTGTTAATCTGAGAGACAACAGGAGTTCTGAGAGAAAGTTCTGTGGTACGTCCTGCCTACAGTACTGCCTCTTTGTGGAAGCACTGCGCTACACGACTGCTACAGGTGTTCTGAAGAGGTCCAAATATTCACCTAAGAGAAGGAGCACAGAAATAGGACAGACACATAGAAAGGAACATAGAAAGAACACAGAAAGGAACATAGAAAGAACACAGAAAGGAACATAGAAAGAACATACAtttagaaagaaagaaaaaaatactTCAGAAAAGCCCAGAAGAACaaagagggtaagagagagaataacaggtctagagacagacagaaacagatagaCGAAAAGACAGGATGGCGAACTCGGGTTTCCAGTTGCTAGGTTACTTCCTGGCATTGGGTGGTTGGATAGGCATCATCTCCACCACTGTGCTGCCCCAATGGAAGCAGTCTTCATACGCGGGTGACGCTATCATCACGGCTGTGGGGCTCTACGAAGGCCTGTGGATGAGCTGTGCCTCACAGAGTACGGGACAGGTGCAGTGCAAGGTGTTTGACTCCATGCTGTCACTGGACGtgCACATCCAGACGTGTCGTGCTCTTATGGTGGTGTCCGTGCTGCTGGGCTTCATAGGAATGATAGTGAGTGTGGTGGGGATGAAGTGCACTAAAGTGGGCGACAACAACCCCATCTCCAAAGGACGCATAGCTGTGTCTGGAGGAGCCCTCTTCCTGCTCGCAGgTCTGTGCACGATGGTGTCTGTGTCCTGGTACGCCACTCAGGTGTCCTATCAGTTCTTCAACCCAAACACGCCAATCAATGCCAGGTATGAGTTTGGGTCTGCCCTGTTCGTGGGATGGGCGGCGGCTAGCTTGACTGTTTTGGGCGGATCCTTCCTGTGTTGCTCCTGCTCCAATGAGGAGAGGCGAGGGCAGCAGTACTACCGCCAATCACAACCATCCACAGCCAGGGAGGCAGAGTTGTTGAGTGAGACTAGTTTCCCTGACTGACCACCCCCTGCCTTTTTTCGAGGACTGTCCGAGTTACGCTCACTGTTTCCCCTTTCCCTGTTCCTTCCTAGATCCAAAATGTGGACCCTTGTTTCTCCGCTATAGCATATGTCgcacccctctacctccctcccaccAGCCCCACATTCCCACCAACCCCACACTCCCTTCCTTAATGTCTGCACCTTATCTGTCTCTGATATTAAGTTATCGGTCAACAAAATTTCCGCCACACCTTTAAGAGCTTGCCACTCCCCTTTCCCACACCCCCTTGAGGTTGTTTGTAAATATGGACTCTGAAAGGAGAAGTATGGCTAGGTGGTTAGACCCCACCTTTCAGACTAGAGGGGTGGCATTACTGTATTTCATCCTGTGAACCCTTTACTAGAAACTCCATTTTGTCCTTTTATCGTTTTTTTACTGAACTTTAATTGTATAGGTAAGATTTGTCATGTCATGTTTTATTGATTTCTGCTTCACTGATATCCTATGATTTCTGGGTTTGTAGATATGTGCCTTTTGGTTTTGTTCTCTGAGAATACAAGTGTACATTTActgaaacatgtttttttcttttaaaTTGCAGACCAAATGTTAAAAGTTCCCCACCAGAGAAAAAGGAGGAATACTTATAGTTTGGGCGACTCCTTTGGCCCCACGATGTGTTAGATTGTTGGCAAAAGGCAAGAATCTGTCTAACAGAAACAGACAAGACACTGTCTCAATGAAAACAAAAGCAGACAAGACACTCTATAGGAAACACACTCTCAGAATGTAACAAAATAAACTCAGAATACACTTTTGAAGTAATACATCTCCAGACCAGTATTTTATCATTCTTAAAGATGCCCATGTGttaaatgtttaaatgtattttagaaTCTATTTTGTACTTTATAGTATTTTATAGTAGAGTGTTGTTACAGCAATATGCACAGGTATTGTCCGTGCTCACCTATGACATATAACTGTTATTTGGAAAATTGAGAGTGAACCTGATTCTGTACTACTACACAGAAGTGCCCAGGTGCATATACCACCACCTCCAGCCTTTCTGCTACATATATGCTCTACTGCAGTGCCTTataacgtgtgtctgtgtgtatgtttttgaCTGTTATACACGGATTCCGCAGTGTCACATCCTATATGGATGATGCATATCGTACCCGTATTGTAAAACATATCCATGCTCGTCTTTTTCTCTTGCATTAAATGAACCATTCAGACAAACTGTTGCATGCAGTTTTATCTCGGAACATAGATGTACTGTAGCTAGTATACCACTTAAAAAAcaacagaaagacagatttgtaaATGGCCCTAACTGATGAAAGCGAAGGCACACCTTGTCAAAGCTGTGAGCCTGTTTGGAAGTAGTACATGTACTGTATCCCGGATTGAGGTTATTATACCTGCATTCTGTTTAGTTAAGTGCCAATATGATTTATTGTGGATGGAAGAGATGTTTTGTTAATGACTATGGAGGATATTCTGTACTCCAGGTGCTGAAAGCACTGTCTCCCGTACAAGCCCTGTATTGGCCAGTTTGCAGAATGTAATCAGGTCAATCGTGTTTTTCTGTTGCATACATTTAGTTACCATATATTTTCTTGATCTAATATTCActattattattttactgtatGTATCATCTCATTTAATGTATACTCCTGTCTGTTTCTTTTAGAATAAAGTAAACGGATAAAAA

Function

NR:

description
PREDICTED: claudin-19-like isoform X2

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609843.2 False 2535 mRNA 0.44 5 58121556 58138678
XM_021609844.2 True 3158 mRNA 0.44 5 58121556 58138678

Neighbor

gene id symbol gene type direction distance location
LOC110528053 nucks1 coding downstream 316288 57794775 ~ 57805268 (-)
LOC110528052 LOC106583108 coding downstream 332397 57782135 ~ 57789159 (-)
LOC110528051 LOC106583109 coding downstream 363025 57752075 ~ 57758531 (-)
LOC110528050 LOC106583110 coding downstream 392239 57712894 ~ 57729317 (-)
LOC110528047 NA coding downstream 519455 57579045 ~ 57602101 (-)
LOC110528058 LOC106583105 coding upstream 41180 58179858 ~ 58192254 (-)
LOC110528061 mfap2 coding upstream 94778 58233456 ~ 58239552 (-)
LOC110528062 LOC106583101 coding upstream 104019 58242697 ~ 58253037 (-)
LOC110528063 LOC106583099 coding upstream 128057 58266735 ~ 58276595 (-)
LOC110528064 ssu72 coding upstream 139174 58277852 ~ 58282613 (-)
G628712 NA non-coding downstream 8880 58112421 ~ 58112676 (-)
G628708 NA non-coding downstream 11816 58109524 ~ 58109740 (-)
G628705 NA non-coding downstream 14558 58106740 ~ 58106998 (-)
G628700 NA non-coding downstream 25119 58096202 ~ 58096437 (-)
G628697 NA non-coding downstream 28296 58093047 ~ 58093260 (-)
G628726 NA non-coding upstream 1828 58140506 ~ 58141151 (-)
G628739 NA non-coding upstream 39031 58177709 ~ 58178222 (-)
G628746 NA non-coding upstream 62426 58201104 ~ 58201409 (-)
G628750 NA non-coding upstream 66965 58205643 ~ 58205909 (-)
G628765 NA non-coding upstream 87179 58225857 ~ 58268848 (-)
G628714 NA other downstream 3434 58117190 ~ 58118122 (-)
G628575 LOC106579815 other downstream 248225 57872050 ~ 57873331 (-)
LOC110528040 NA other downstream 1062986 57052191 ~ 57059527 (-)
vamp3 vamp3 other downstream 1252105 56853567 ~ 56869607 (-)
G627323 NA other downstream 1269255 56846962 ~ 56852301 (-)
LOC110528069 LOC106583062 other upstream 287497 58425680 ~ 58437154 (-)
LOC110528083 LOC106583085 other upstream 553139 58691817 ~ 58695856 (-)
sfrs3 sfrs3 other upstream 568894 58707572 ~ 58713630 (-)
G630132 NA other upstream 1608772 59747450 ~ 59752591 (-)
G630227 NA other upstream 1777301 59915979 ~ 59917551 (-)

Expression


Co-expression Network