LOC110528061 (mfap2)


Basic Information

Item Value
gene id LOC110528061
gene name mfap2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58233456 ~ 58239552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609851.2
CGGGAGTGGGCGATGGGACAGAcagaggtggggagagggggctTGAAGGCGGGGCGTTACAATGTGGCGCTCGGTCAGACTGCTGAAGACGGACGCATGAGACTTGCGGATCGCCGGAGAAAATAAAAATAAGGTCTCTCTTCCTCAGTGTCAGTCTACCTCCACACAGAACACGACCATGAGAGTCCTCCTACTGCTCTCCATGCCAGTCCTTCTGCTAGCCCAGCCCCCACTCTACCAAGAACCCTTTCCTTTCCTGGAGGACTATGACCCTGATTATTTTCCTGagAATCCTGACACGGATGTCCAGCAGCAGGTCTTGTTACATGGTCCTCGACCATTCCCTGAGCCAGAACGTCCTCGTCCATCTGagccagagacagagcccACAGAACCTGGCCCCCTAGaTTGCCGAGAAGAGCAGTACCCCTGCACCAGACTCTACTCTATTCACAAGCCATGCAAACAGTGTCTGAATAGCCTCTGTTTCTACAGCTTGCGAAGGGTGTATGTGATCAACAAGGAGGTGTGTGTCAGGACCGTGTGTGCGCATGAAGAGCTGCTAAGAGctgacaTGTGCCGTGACCAGTTCTCTCGGTGTGGTGTAGCGGCGGTGAGTGGCCAGTGTGGGTCACTGGGGAGCAGCTGTGGGAAGAGCTGTGGAGGCTGTTGAGAACATGGACACATCAGAGAGAACTCCAGCCCAAATACTGCCACATCTCTTAGGGTCCACATCCCACCCCCTAcacccttctcttcctctgtcccatCTCTTTTCCTGTTTAATCTTCGACTGTATTCCACATAATCTTTGGTTCCAAAAAACTCCTCTATTTGTTTATTTTCTCTACTTCTCTAGTGACTTTCCCCATCATCCCTTTTTTCATCTCTCTTTCAGAATGATACACAATGCAAGGTGGGATCAGTAGAATGTGTGTATGTCTAAACATATTATTTCATATTCAACAGAACATTGATGACTGTATAACATAACTGGTGCTATAAAATCACTAACATACTGGTGCTAAGGAATTGAAATCAGCACTCAAGAGATGCACATAAAACAATCTTGATCTTGTTTTTTTTGCCTTACTGTATCCTATATTCTACATCATTGtgtggtgtttgttgttgtttactgTACCTTTGTTGAAATCAGTCATAGTAGTGAGGGAACAGCAAGAGTGGCAGCCACTGTGCACTGACCTCAACAACAGAGGCATTATCAGCACTCAATCATCATCCCACTGCCTCTGCACTTCCTGGGTGGCGAGCATCCACAATCAGACTTGAAGAGACGGATTCTGACCTGACGCCTGATCTCTCCTGAAAGTGTTTTTGTGTAACACGGTCGGCCACATGACTAGAGCTACGGTGGCTGGTGACCTTGCAGTGAGTGCATAGTTTCACATATCAGAGGCAAGAAGTGGCGGCTCATAAATTGTTACTGTACTACTGCTTTGTAAAACCCTTTCACTATAATGGAggagaaaataaatgttttttttactacaa
>XM_036983618.1
TTGGCGGGAGTGGGCGATGGGACAGAcagaggtggggagagggggctTGAAGGCGGGGCGTTACAATGTGGCGCTCGGTCAGACTGCTGAAGACGGACGCATGAGACTTGCGGATCGCCGGAGAAAATAAAAATAAGGTCTCTCTTCCTCAGTGTCAGTCTACCTCCACACAGAACACGACCATGAGAGTCCTCCTACTGCTCTCCATGCCAGAGGACTATGACCCTGATTATTTTCCTGagAATCCTGACACGGATGTCCAGCAGCAGGTCTTGTTACATGGTCCTCGACCATTCCCTGAGCCAGAACGTCCTCGTCCATCTGagccagagacagagcccACAGAACCTGGCCCCCTAGaTTGCCGAGAAGAGCAGTACCCCTGCACCAGACTCTACTCTATTCACAAGCCATGCAAACAGTGTCTGAATAGCCTCTGTTTCTACAGCTTGCGAAGGGTGTATGTGATCAACAAGGAGGTGTGTGTCAGGACCGTGTGTGCGCATGAAGAGCTGCTAAGAGctgacaTGTGCCGTGACCAGTTCTCTCGGTGTGGTGTAGCGGCGGTGAGTGGCCAGTGTGGGTCACTGGGGAGCAGCTGTGGGAAGAGCTGTGGAGGCTGTTGAGAACATGGACACATCAGAGAGAACTCCAGCCCAAATACTGCCACATCTCTTAGGGTCCACATCCCACCCCCTAcacccttctcttcctctgtcccatCTCTTTTCCTGTTTAATCTTCGACTGTATTCCACATAATCTTTGGTTCCAAAAAACTCCTCTATTTGTTTATTTTCTCTACTTCTCTAGTGACTTTCCCCATCATCCCTTTTTTCATCTCTCTTTCAGAATGATACACAATGCAAGGTGGGATCAGTAGAATGTGTGTATGTCTAAACATATTATTTCATATTCAACAGAACATTGATGACTGTATAACATAACTGGTGCTATAAAATCACTAACATACTGGTGCTAAGGAATTGAAATCAGCACTCAAGAGATGCACATAAAACAATCTTGATCTTGTTTTTTTTGCCTTACTGTATCCTATATTCTACATCATTGtgtggtgtttgttgttgtttactgTACCTTTGTTGAAATCAGTCATAGTAGTGAGGGAACAGCAAGAGTGGCAGCCACTGTGCACTGACCTCAACAACAGAGGCATTATCAGCACTCAATCATCATCCCACTGCCTCTGCACTTCCTGGGTGGCGAGCATCCACAATCAGACTTGAAGAGACGGATTCTGACCTGACGCCTGATCTCTCCTGAAAGTGTTTTTGTGTAACACGGTCGGCCACATGACTAGAGCTACGGTGGCTGGTGACCTTGCAGTGAGTGCATAGTTTCACATATCAGAGGCAAGAAGTGGCGGCTCATAAATTGTTACTGTACTACTGCTTTGTAAAACCCTTTCACTATAATGGAggagaaaataaatgttttttttactacaa
>XM_036983617.1
GTCTCCTGACTGTGATTGGCGGGAGTGGGCGATGGGACAGAcagaggtggggagagggggctTGAAGGCGGGGCGTTACAATGTGGCGCTCGGTCAGACTGCTGAAGACGGACGCATGAGACTTGCGGATCGCCGGAGAAAATAAAAATAAGTGTCAGTCTACCTCCACACAGAACACGACCATGAGAGTCCTCCTACTGCTCTCCATGCCAGAGGACTATGACCCTGATTATTTTCCTGagAATCCTGACACGGATGTCCAGCAGCAGGTCTTGTTACATGGTCCTCGACCATTCCCTGAGCCAGAACGTCCTCGTCCATCTGagccagagacagagcccACAGAACCTGGCCCCCTAGaTTGCCGAGAAGAGCAGTACCCCTGCACCAGACTCTACTCTATTCACAAGCCATGCAAACAGTGTCTGAATAGCCTCTGTTTCTACAGCTTGCGAAGGGTGTATGTGATCAACAAGGAGGTGTGTGTCAGGACCGTGTGTGCGCATGAAGAGCTGCTAAGAGctgacaTGTGCCGTGACCAGTTCTCTCGGTGTGGTGTAGCGGCGGTGAGTGGCCAGTGTGGGTCACTGGGGAGCAGCTGTGGGAAGAGCTGTGGAGGCTGTTGAGAACATGGACACATCAGAGAGAACTCCAGCCCAAATACTGCCACATCTCTTAGGGTCCACATCCCACCCCCTAcacccttctcttcctctgtcccatCTCTTTTCCTGTTTAATCTTCGACTGTATTCCACATAATCTTTGGTTCCAAAAAACTCCTCTATTTGTTTATTTTCTCTACTTCTCTAGTGACTTTCCCCATCATCCCTTTTTTCATCTCTCTTTCAGAATGATACACAATGCAAGGTGGGATCAGTAGAATGTGTGTATGTCTAAACATATTATTTCATATTCAACAGAACATTGATGACTGTATAACATAACTGGTGCTATAAAATCACTAACATACTGGTGCTAAGGAATTGAAATCAGCACTCAAGAGATGCACATAAAACAATCTTGATCTTGTTTTTTTTGCCTTACTGTATCCTATATTCTACATCATTGtgtggtgtttgttgttgtttactgTACCTTTGTTGAAATCAGTCATAGTAGTGAGGGAACAGCAAGAGTGGCAGCCACTGTGCACTGACCTCAACAACAGAGGCATTATCAGCACTCAATCATCATCCCACTGCCTCTGCACTTCCTGGGTGGCGAGCATCCACAATCAGACTTGAAGAGACGGATTCTGACCTGACGCCTGATCTCTCCTGAAAGTGTTTTTGTGTAACACGGTCGGCCACATGACTAGAGCTACGGTGGCTGGTGACCTTGCAGTGAGTGCATAGTTTCACATATCAGAGGCAAGAAGTGGCGGCTCATAAATTGTTACTGTACTACTGCTTTGTAAAACCCTTTCACTATAATGGAggagaaaataaatgttttttttactacaa
>XM_021609850.2
AAGGTTAGTGGGTTTATGTGCAGTCAGTCAGTGCCATGGTCTCCTGACTGTGATTGGCGGGAGTGGGCGATGGGACAGAcagaggtggggagagggggctTGAAGGCGGGGCGTTACAATGTGGCGCTCGGTCAGACTGCTGAAGACGGACGCATGAGACTTGCGGATCGCCGGAGAAAATAAAAATAAGTGTCAGTCTACCTCCACACAGAACACGACCATGAGAGTCCTCCTACTGCTCTCCATGCCAGTCCTTCTGCTAGCCCAGCCCCCACTCTACCAAGAACCCTTTCCTTTCCTGGAGGACTATGACCCTGATTATTTTCCTGagAATCCTGACACGGATGTCCAGCAGCAGGTCTTGTTACATGGTCCTCGACCATTCCCTGAGCCAGAACGTCCTCGTCCATCTGagccagagacagagcccACAGAACCTGGCCCCCTAGaTTGCCGAGAAGAGCAGTACCCCTGCACCAGACTCTACTCTATTCACAAGCCATGCAAACAGTGTCTGAATAGCCTCTGTTTCTACAGCTTGCGAAGGGTGTATGTGATCAACAAGGAGGTGTGTGTCAGGACCGTGTGTGCGCATGAAGAGCTGCTAAGAGctgacaTGTGCCGTGACCAGTTCTCTCGGTGTGGTGTAGCGGCGGTGAGTGGCCAGTGTGGGTCACTGGGGAGCAGCTGTGGGAAGAGCTGTGGAGGCTGTTGAGAACATGGACACATCAGAGAGAACTCCAGCCCAAATACTGCCACATCTCTTAGGGTCCACATCCCACCCCCTAcacccttctcttcctctgtcccatCTCTTTTCCTGTTTAATCTTCGACTGTATTCCACATAATCTTTGGTTCCAAAAAACTCCTCTATTTGTTTATTTTCTCTACTTCTCTAGTGACTTTCCCCATCATCCCTTTTTTCATCTCTCTTTCAGAATGATACACAATGCAAGGTGGGATCAGTAGAATGTGTGTATGTCTAAACATATTATTTCATATTCAACAGAACATTGATGACTGTATAACATAACTGGTGCTATAAAATCACTAACATACTGGTGCTAAGGAATTGAAATCAGCACTCAAGAGATGCACATAAAACAATCTTGATCTTGTTTTTTTTGCCTTACTGTATCCTATATTCTACATCATTGtgtggtgtttgttgttgtttactgTACCTTTGTTGAAATCAGTCATAGTAGTGAGGGAACAGCAAGAGTGGCAGCCACTGTGCACTGACCTCAACAACAGAGGCATTATCAGCACTCAATCATCATCCCACTGCCTCTGCACTTCCTGGGTGGCGAGCATCCACAATCAGACTTGAAGAGACGGATTCTGACCTGACGCCTGATCTCTCCTGAAAGTGTTTTTGTGTAACACGGTCGGCCACATGACTAGAGCTACGGTGGCTGGTGACCTTGCAGTGAGTGCATAGTTTCACATATCAGAGGCAAGAAGTGGCGGCTCATAAATTGTTACTGTACTACTGCTTTGTAAAACCCTTTCACTATAATGGAggagaaaataaatgttttttttactacaa

Function

symbol description
mfap2 Acts upstream of or within blood vessel development and embryonic eye morphogenesis. Predicted to be located in extracellular region and microfibril. Is expressed in several structures, including mesoderm; notochord; postcranial axial skeleton; trunk mesenchyme; and vasculature. Orthologous to human MFAP2 (microfibril associated protein 2).

NR:

description
PREDICTED: microfibrillar-associated protein 2 isoform X1

GO:

id name namespace
GO:0001527 microfibril cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609851.2 False 1515 mRNA 0.47 9 58233456 58239495
XM_036983618.1 False 1468 mRNA 0.47 8 58233456 58239499
XM_036983617.1 False 1468 mRNA 0.47 8 58233456 58239514
XM_021609850.2 True 1557 mRNA 0.47 9 58233456 58239552

Neighbor

gene id symbol gene type direction distance location
LOC110528058 LOC106583105 coding downstream 41202 58179858 ~ 58192254 (-)
LOC110528056 LOC106583106 coding downstream 94778 58121556 ~ 58138678 (-)
LOC110528053 nucks1 coding downstream 428188 57794775 ~ 57805268 (-)
LOC110528052 LOC106583108 coding downstream 444297 57782135 ~ 57789159 (-)
LOC110528051 LOC106583109 coding downstream 474925 57752075 ~ 57758531 (-)
LOC110528062 LOC106583101 coding upstream 3145 58242697 ~ 58253037 (-)
LOC110528063 LOC106583099 coding upstream 27183 58266735 ~ 58276595 (-)
LOC110528064 ssu72 coding upstream 38300 58277852 ~ 58282613 (-)
LOC110528066 LOC106583064 coding upstream 44192 58283744 ~ 58286379 (-)
LOC110528979 LOC106583057 coding upstream 51734 58291286 ~ 58292996 (-)
G628750 NA non-coding downstream 27547 58205643 ~ 58205909 (-)
G628746 NA non-coding downstream 32047 58201104 ~ 58201409 (-)
G628739 NA non-coding downstream 55234 58177709 ~ 58178222 (-)
G628726 NA non-coding downstream 92305 58140506 ~ 58141151 (-)
G628712 NA non-coding downstream 120780 58112421 ~ 58112676 (-)
G628768 NA non-coding upstream 5235 58244787 ~ 58269773 (-)
G628787 NA non-coding upstream 31812 58271364 ~ 58271743 (-)
G628790 NA non-coding upstream 34508 58274060 ~ 58274287 (-)
G628791 NA non-coding upstream 35235 58274787 ~ 58275029 (-)
LOC110528069 LOC106583062 non-coding upstream 189931 58425680 ~ 58437154 (-)
G628714 NA other downstream 115334 58117190 ~ 58118122 (-)
G628575 LOC106579815 other downstream 360125 57872050 ~ 57873331 (-)
LOC110528040 NA other downstream 1174886 57052191 ~ 57059527 (-)
vamp3 vamp3 other downstream 1364005 56853567 ~ 56869607 (-)
G627323 NA other downstream 1381155 56846962 ~ 56852301 (-)
LOC110528083 LOC106583085 other upstream 452265 58691817 ~ 58695856 (-)
sfrs3 sfrs3 other upstream 468020 58707572 ~ 58713630 (-)
G630132 NA other upstream 1507898 59747450 ~ 59752591 (-)
G630227 NA other upstream 1676427 59915979 ~ 59917551 (-)

Expression


Co-expression Network