LOC110528063 (LOC106583099)


Basic Information

Item Value
gene id LOC110528063
gene name LOC106583099
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58266735 ~ 58276595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609854.2
TCAACTGGAATGCACAGTGGGAGGCTCCGTATTCTCTTTCAGCTGGGCCAAAGTAGCCTATCCTGTCGGACTATGAGAAATGATAGATAGCCTGACAATGAACAAACACCTGCTAGAGGGAGCTAACACGGAAAACGACCTGATTGGAGAAGAAAACACGAATCGATGATTCCTTGCCTAATGCTAGTGGATGCGTCCAGGTAAATAGGCTACACCAGAAAATGTGCAGTGGCTGGCATCACAGCAACGCATGGATCGCGACTTCGTCCTGATATCAACTGTGCCGTGCTCTGGAATAGCCTAACAATCATTTTTCTGACATACGCTACAGCTTTCACACCACGCCTCCCCGTTGCACGCACCTCGATTAACCATCTTCGCTGGTGCACAGAGTGCTTTTCAAAAGGGAGCGAAAATGAGACTGGTCCTCATCTCCTCATGTCGCGGAGAAAGGAACATCGGATAGACGATGCAATGATGGGTAGTTGGACACTGATGCTGCATCCATGAGCGCCTTCACTTCAGGGTGTTGTTTTTGGCACAGGTATCACAGGATAGTTCTGGAGGGAAAGCAACAAACTGGAAGTTTTGATTCAATAGTGCATAACCGCCACGATCTTTATGATTTTGGGGGATTTATTTGTGATGGCTGTAGAGTGTCTAAAGGACATGAACGCGCTACTGGACCGCTTTCACAACTATATTTTACCACATTTACGAGGGGAGGATCACGTCTGCCATTGCAACTGTGGAAGGCACCATGTACACTATGTGATCCCGTATGATGGGGACCAGTCTCTGGTGGACTCTGCAGAGAACTACTTTGTGAGTGACAGTGTGACCAAGCAGGAGCTGGACCTGATGTTGGGGCTGCTGCTGGGCTTCCTCCTAAGCTGGCTGCTGCTGTGCCTGGATGGGGCGCTGCACGCTGCCCTCAGACGTTGGAGGGCCAAACAGCACCATGATGCGTTCTCCTGGTCATGGGTTCCCCGCTTCTGTAACCTGGGAAGAAGGGTGCACATGAGAAAGCTAGAGGACTCAAGTGGGAACATGGTGCACATTAAGCAGAAGCTGTACCACAACGGACACCCCAGCCCACGCCACCTCTGAGAGCATTGGACTGGCTGAGACCATAG

Function

NR:

description
transmembrane protein 240-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609854.2 True 1136 mRNA 0.51 4 58266735 58276595

Neighbor

gene id symbol gene type direction distance location
LOC110528062 LOC106583101 coding downstream 13698 58242697 ~ 58253037 (-)
LOC110528061 mfap2 coding downstream 27183 58233456 ~ 58239552 (-)
LOC110528058 LOC106583105 coding downstream 74481 58179858 ~ 58192254 (-)
LOC110528056 LOC106583106 coding downstream 128057 58121556 ~ 58138678 (-)
LOC110528053 nucks1 coding downstream 461467 57794775 ~ 57805268 (-)
LOC110528064 ssu72 coding upstream 1257 58277852 ~ 58282613 (-)
LOC110528066 LOC106583064 coding upstream 7149 58283744 ~ 58286379 (-)
LOC110528979 LOC106583057 coding upstream 14691 58291286 ~ 58292996 (-)
LOC110527128 LOC106583056 coding upstream 33735 58310330 ~ 58313518 (-)
LOC110528067 LOC106583063 coding upstream 46273 58322868 ~ 58345203 (-)
G628750 NA non-coding downstream 60826 58205643 ~ 58205909 (-)
G628746 NA non-coding downstream 65326 58201104 ~ 58201409 (-)
G628739 NA non-coding downstream 88513 58177709 ~ 58178222 (-)
G628726 NA non-coding downstream 125584 58140506 ~ 58141151 (-)
G628712 NA non-coding downstream 154059 58112421 ~ 58112676 (-)
LOC110528069 LOC106583062 non-coding upstream 152888 58425680 ~ 58437154 (-)
LOC110528071 LOC106583097 non-coding upstream 176382 58452974 ~ 58456858 (-)
G628878 NA non-coding upstream 193590 58470185 ~ 58496244 (-)
G628966 NA non-coding upstream 285808 58562403 ~ 58563031 (-)
G628969 NA non-coding upstream 289973 58566568 ~ 58567862 (-)
G628714 NA other downstream 148613 58117190 ~ 58118122 (-)
G628575 LOC106579815 other downstream 393404 57872050 ~ 57873331 (-)
LOC110528040 NA other downstream 1208165 57052191 ~ 57059527 (-)
vamp3 vamp3 other downstream 1397284 56853567 ~ 56869607 (-)
G627323 NA other downstream 1414434 56846962 ~ 56852301 (-)
LOC110528083 LOC106583085 other upstream 415222 58691817 ~ 58695856 (-)
sfrs3 sfrs3 other upstream 430977 58707572 ~ 58713630 (-)
G630132 NA other upstream 1470855 59747450 ~ 59752591 (-)
G630227 NA other upstream 1639384 59915979 ~ 59917551 (-)

Expression


Co-expression Network