LOC110528067 (LOC106583063)


Basic Information

Item Value
gene id LOC110528067
gene name LOC106583063
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58322868 ~ 58345203 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609860.2
TTGGAGGGTGAGGAGGAAATTAAATAGAAGAAGCACTTTATCAATTGATCTTGTGGAGAGGGGGGTAAATGCATTCTGTGAAAGTGGGAGACTTGTGCCAGTGATAAAAGTAATGAAATTGGACTAAAAGTGGAAAGAAATTAAATTGATCAAACATTTTTGTATACGTTTTGAATGAGGTAGTGTGGAGTAAGtcgtctactgtgtgtgtgtataccagaGCGCCCTTGTGTGGTACCAGTTTGTGATTACTTTTCAGCCTTTCTAAGGAAGCAGGCTGTACAACAAGACTTATCCCTTGGCGCATGAGAATCTCGAGGAAGTGTGAGAGGGAAGGAACTGTAATACAGTACAACAAAGCTATGGACAGTGACTTGAGAAGGTCCCATTCAGGGTGCACTTGTTTGCTCTATTTCATCATAACGTATTGATCCAATTCATGATGGAGTGGCTTGGATTTTCCTGTTTGCTGCTCGGTGTGTTACTGTGGCCGAGCAGCACACAAAACGTTGTACCTGGCACAGctctgaaCTGTTGTGAGGGGGATATCCTGCTCCTGTTGGATTCTTCAGGAAGTGTGTCATCCTACGAGTTCTCTCGCCTGCTGCACTTCCTGTCCGAGctactcctccccttctctctgggGCGGGGTCAGGTGAGGGCGGGGCTGCTGCAGGTGGGCACTGAGCCACACCTGGAGTTTGGTCTGGACGCCCACAGCACCCAGCCTGGCTTGCAAGGGGCACTGCATAGGACCAGGCAACTCCAGGGGGACACCAACACAGAGGCTGCCCTCAGACAGGCCCAGGGGCTGCTAGccagagctggggctggggatgaGTTGGAGCTCCCCAAAGTGCTGGTGTGGCTAACGGATGGGGTACACCCGGGCATGGTGGATGGACCAATGGCAGAGCTGAGAAGGGCGGGTGTGTTTCTGTTGGCTGTCTCTACGGGACACGGGAACTACCAGGTACTGCAGAGGGTGGTGACCCCGCCCATCGAGTCCCACCTGTACTTTGTGGACATCGATGACATCAGTATCAtcacagaggacctgagggaGGCCATCATTGagCTGATCCACGTTGAGCGCCTGAGGGTGGTACAGGTGTCCTCCCACAGTGCCATGCTGCAGTGGCGTCCTGTACTCGGATCCAACACAGATTTCTACAGCTTTTTACACTACAGCTCTGTTCTGCCAGGTGGTGGTCAGCCTAACGGCGGGGCCAGCAGTGGGGGGCAGTACCACAGACGGACCCTCCCCGGGGACGCCAGCTGGGTGGAGCTGAGTGGCCTGCAGCCAGACACCATCTACACTGCCTCCCTCACCCCCAACTCCCAGTCCAACCATGATTATCTCAACACTCTCAGTGTCACCTTCACTACACAACCCGAGGTGTTGAGCCCAGCGGTGGTCACAGTGGCAGACTCAGGTCCTGACAGGGTGCGAGTGAGCTGGGGTCCTCTGCAAACTGAACATGTCCAGCGGTACCAGATAGAGTATGGAGCTCTACCCAGTGGGCAGGTCCACACGGTTAGGCTACACGGACATCAGAACTCCACTCTGCTCACTGGTCTAGAGCCAGACACACAGTACCTAGTTACTGTCAGCGCCCTGTACTCCACAGGCAAAGAGAAGGCCATGTCTGTCAAGGCCTGCACTCAGGAGGTGCTGCCAGCCCTGGCTGACCTCCAGCTGACCCCAGTGGGGCGTGATGCGGTGCAGGTCCGGTGGTGGGGCCACGATGAGGGGCTGAGGGGGTACTGGCTCAACTGGGAGAGGGGTGAGACCCAGAGCCCCTCCCGCCCTGCATTCTCCTGCCTATacctgccccctgactccctgTCCACACTGCTCACACACCTGGCCCCCAGCAGCCGAGTGTGTGTGTCCCCTGTCTACCGCATGGCCCGGGGATTGGGGCTCTGCTGCaccgcacgcacacaaacaggtCTGATACTGCGCGCACACATACCAGAGTTGGGCTCAATTCAGAATTTTGGAATTGGTTCCCATTCAACTCATGAgttacatttaaattaaattggCCACACTCCACAGGATGTAGACATTGCAGTTGAGTGACAGGAAGTAGAATTTAATTCAGTGCTATTCAAATTCAGTGCTATTCAAAGACATTCCAATGTCATAGAACATGAGAGTGTCATTAAAACCAGAGAgagtgcaaatctgtcatcaaggcaaagggtggctactttgaaaaatctcaaatgtaacattttgatttgtttaacacttttctggttactacatgattcca

Function

NR:

description
von Willebrand factor A domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609860.2 True 2285 mRNA 0.53 5 58322868 58345203

Neighbor

gene id symbol gene type direction distance location
LOC110527128 LOC106583056 coding downstream 9350 58310330 ~ 58313518 (-)
LOC110528979 LOC106583057 coding downstream 29872 58291286 ~ 58292996 (-)
LOC110528066 LOC106583064 coding downstream 36489 58283744 ~ 58286379 (-)
LOC110528064 ssu72 coding downstream 40255 58277852 ~ 58282613 (-)
LOC110528063 LOC106583099 coding downstream 46273 58266735 ~ 58276595 (-)
LOC110528069 LOC106583062 coding upstream 80477 58425680 ~ 58437154 (-)
LOC110528070 LOC106583098 coding upstream 95037 58440240 ~ 58452227 (-)
LOC110528071 LOC106583097 coding upstream 107771 58452974 ~ 58456858 (-)
LOC110528074 LOC106583092 coding upstream 245863 58591066 ~ 58619101 (-)
LOC110528080 NA coding upstream 282132 58627335 ~ 58629263 (-)
G628791 NA non-coding downstream 47839 58274787 ~ 58275029 (-)
G628790 NA non-coding downstream 48581 58274060 ~ 58274287 (-)
G628787 NA non-coding downstream 51125 58271364 ~ 58271743 (-)
G628768 NA non-coding downstream 53095 58244787 ~ 58269773 (-)
G628765 NA non-coding downstream 54020 58225857 ~ 58268848 (-)
G628878 NA non-coding upstream 124982 58470185 ~ 58496244 (-)
G628966 NA non-coding upstream 217200 58562403 ~ 58563031 (-)
G628969 NA non-coding upstream 221365 58566568 ~ 58567862 (-)
G628714 NA other downstream 204746 58117190 ~ 58118122 (-)
G628575 LOC106579815 other downstream 449537 57872050 ~ 57873331 (-)
LOC110528040 NA other downstream 1264298 57052191 ~ 57059527 (-)
vamp3 vamp3 other downstream 1453417 56853567 ~ 56869607 (-)
G627323 NA other downstream 1470567 56846962 ~ 56852301 (-)
LOC110528083 LOC106583085 other upstream 346614 58691817 ~ 58695856 (-)
sfrs3 sfrs3 other upstream 362369 58707572 ~ 58713630 (-)
G630132 NA other upstream 1402247 59747450 ~ 59752591 (-)
G630227 NA other upstream 1570776 59915979 ~ 59917551 (-)

Expression


Co-expression Network