LOC110528068 (LOC106595335)


Basic Information

Item Value
gene id LOC110528068
gene name LOC106595335
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58406785 ~ 58411255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983622.1
CATCAATTGTAGCATAGCAGAGGCACGCTGTCCTCTAACCTACAGAGTCACATTAGTTGTTGGCATGGGCCTCATGATGGCAAACACGCTCAGGTTATTGTTCAAGCAACTGGTTTGGTTTTTACTTGTGGAAAACTTCTTACTCTCTCCTGCTTTGTCATATACTTATAGCACTGGCACATGGCAACAACTTCCAAGGCGAACACCGCAATTTGACAATCGTCCACGCtttaaacagcctccactccaaCAAACAGTTTCAAGGCCAGTTCGAGTAGAAACTGTCGCTGTGACGTGCCATTCAGACTACATGGAGATAGTCGTGAAGGCTGATCTGTTTAAACTCGGTAATCTAATTGACGTGGATGACCTGCGACTTGGAGTTGAACAGTACCAAGACCAAGAGCCGTGTAGGGCTACAGCTTCAGCAGCCGGAGATGAGTACAGAATATTTGCAGCACTTTCGGACTGTGGAACCAAGCACatgCTGAACGAAGACTCATTGATCTACGCAAACCTCCTCAGATATACACCCAGAACCACACCAGATGACGTTATTCGAATGGCTGGTGCTGTAATCCCAATTGAGTGTCATTATGAAAGGAAGTACAGTTTGGACAGCTCTTCTCTCCAGCCGACCTGGATCCCTTTCACCGCCACAGTGTCTGCTGAAGACACCCTGCAGTTCTCATTGAAGCTTATGACAAGTGACTGGCTCTATGAGCGGGGTTCTGGAGTCTACTTCCTGGGTGATCCCATCAACATTGAGGCGTCTGTCAGGGTTGCTCACCACACCAGGTTCAGGGTCTTTGTTAGCAGCTGCGTGGCCACACTAGACCCTGATAGCAACTCTGTTCCCAGATATGTCTTCATTGAGAGTGATGGGTGCTTGTTGGATTCCCAGCTGCCTGGTTCCCGCTCTGGTTTCATGCGTAGAACCCAGGACAACAAGCTCGGGTTCCACATTGATGCCTTTAGGTTCTACCAGGAGGACAGGGCAGAGCTGTACATCACCTGCCATCTTATGGCAGTCCCTGTCATGGACCATGCAGAGCCTAGCAACAAGGCATGCTCCTTCATTGATGGCAGATGGAGGTCTGCTGATGAGAATGATTTGCTATGTGGTCATTGTTCAAGCCTGAGTAGACAGAAGGGGGTTGATCAAGCTCCAGTACAACGTCCCCTCAGTCCAAGACTAGGTGGTAGCCAACTTGAACCTCGTGTCTACCGCAACAAACCCCCAGCCTCTGGTGACAATTGGAGTATTGGGACGAAGGCCAAGAAAGTATGGGACCAGGATACTACTTTGGGCCCCATGATGGTCCTCCCAAGTAAACAGAAGAGTACACCTCTATCTCCACGGACGAGTGGCGGTATCGATATACCTGGCTTCCCTGCCTCAACAGGGGACAGGAAGCCCGTATCACCTGGCAGTCGTTGGCGTGGCATGGACTTCAAGAGAGgacCTTATTTCGCCCAATCCCAAAATGAGGTTAGTCCCTTGGGCCCAAGGGTTGGACCCAAGAACAAGCACGGTCTCGTTAGCTCTGAAACATATGATGGCTTCATCAGGCAGAAAGAACTAATCGCCCAACAAGAGCTGGAGGCCACTCCAGACCCTGAGTTGATTCCTACACCTGAGCCCATTGGAGACCTTGAGGTTACCACAGAGAAAGAGGGTCTGGATGAAGAGGAGGCTCAGTATGAGATTGGAACCTATTGAAAGGGGATATGTTCCCAGTCCACTATCAAATTTCTAGAATTGGAAGGCGCTGTTGTCATGGTGGCCCATAATAGACTTGCTCCAAGCAGCAGCACACTCCAACTCACTGAGGTTGGTGCCGGTCCTGATGTTCCAGCACACAAGGAGGATGACCCTACAACAAAGTGACATAAGCACCACATCTGCTCCTGGCGACGTCAACCAGTGAAGGGACTACCACAACACTGAGACGATATCTCAAGAGATGCCTGTTAATCtctttgaaaaataaatgatttaatgCTA
>XM_036983623.1
CATCAATTGTAGCATAGCAGAGGCACGCTGTCCTCTAACCTACAGAGTCACATTAGTTGTTGGCATGGGCCTCATGATGGCAAACACGCTCAGGTTATTGTTCAAGCAACTGGTTTGGTTTTTACTTGTGGAAAACTTCTTACTCTCTCCTGCTTTGTCATATACTTATAGCACTGGCACATGGCAACAACTTCCAAGGCGAACACCGCAATTTGACAATCGTCCACGCtttaaacagcctccactccaaCAAACAGTTTCAAGGCCAGTTCGAGTAGAAACTGTCGCTGTGACGTGCCATTCAGACTACATGGAGATAGTCGTGAAGGCTGATCTGTTTAAACTCGGTAATCTAATTGACGTGGATGACCTGCGACTTGGAGTTGAACAGTACCAAGACCAAGAGCCGTGTAGGGCTACAGCTTCAGCAGCCGGAGATGAGTACAGAATATTTGCAGCACTTTCGGACTGTGGAACCAAGCACatgCTGAACGAAGACTCATTGATCTACGCAAACCTCCTCAGATATACACCCAGAACCACACCAGATGACGTTATTCGAATGGCTGGTGCTGTAATCCCAATTGAGTGTCATTATGAAAGGAAGTACAGTTTGGACAGCTCTTCTCTCCAGCCGACCTGGATCCCTTTCACCGCCACAGTGTCTGCTGAAGACACCCTGCAGTTCTCATTGAAGCTTATGACAAGTGACTGGCTCTATGAGCGGGGTTCTGGAGTCTACTTCCTGGGTGATCCCATCAACATTGAGGCGTCTGTCAGGGTTGCTCACCACACCAGGTTCAGGGTCTTTGTTAGCAGCTGCGTGGCCACACTAGACCCTGATAGCAACTCTGTTCCCAGATATGTCTTCATTGAGAGTGATGGGTGCTTGTTGGATTCCCAGCTGCCTGGTTCCCGCTCTGGTTTCATGCGTAGAACCCAGGACAACAAGCTCGGGTTCCACATTGATGCCTTTAGGTTCTACCAGGAGGACAGGGCAGAGCTGTACATCACCTGCCATCTTATGGCAGTCCCTGTCATGGACCATGCAGAGCCTAGCAACAAGGCATGCTCCTTCATTGATGGCAGATGGAGGTCTGCTGATGAGAATGATTTGCTATGTGGTCATTGTTCAAGCCTGAGTAGACAGAAGGGGGTTGATCAAGCTCCAGTACAACGTCCCCTCAGTCCAAGACTAGGTGGTAGCCAACTTGAACCTCGTGTCTACCGCAACAAACCCCCAGCCTCTGGTGACAATTGGAGTATTGGGACGAAGGCCAAGAAAGTATGGGACCAGGATACTACTTTGGGCCCCATGATGGTCCTCCCAAGTAAACAGAAGAGTACACCTCTATCTCCACGGACGAGTGGCGGTATCGATATACCTGGCTTCCCTGCCTCAACAGGGGACAGGAAGCCCGTATCACCTGGCAGTCGTTGGCGTGGCATGGACTTCAAGAGAGgacCTTATTTCGCCCAATCCCAAAATGAGGTTAGTCCCTTGGGCCCAAGGGTTGGACCCAAGAACAAGCACGGTCTCGTTAGCTCTGAAACATATGATGGCTTCATCAGGCAGAAAGAACTAATCGCCCAACAAGAGCTGGAGGCCACTCCAGACCCTGAGTTGATTCCTACACCTGAGCCCATTGGAGACCTTGAGGTTACCACAGAGAAAGAGGGTCTGGATGAAGAGGAGGCTCAGTATGAGATTGGAACCTATTGAAAGGTCCACTATCAAATTTCTAGAATTGGAAGGCGCTGTTGTCATGGTGGCCCATAATAGACTTGCTCCAAGCAGCAGCACACTCCAACTCACTGAGGTTGGTGCCGGTCCTGATGTTCCAGCACACAAGGAGGATGACCCTACAACAAAGTGACATAAGCACCACATCTGCTCCTGGCGACGTCAACCAGTGAAGGGACTACCACAACACTGAGACGATATCTCAAGAGATGCCTGTTAATCtctttgaaaaataaatgatttaatgCTA
>XM_036983624.1
CATCAATTGTAGCATAGCAGAGGCACGCTGTCCTCTAACCTACAGAGTCACATTAGTTGTTGGCATGGGCCTCATGATGGCAAACACGCTCAGGTTATTGTTCAAGCAACTGGTTTGGTTTTTACTTGTGGAAAACTTCTTACTCTCTCCTGCTTTGTCATATACTTATAGCACTGGCACATGGCAACAACTTCCAAGGCGAACACCGCAATTTGACAATCGTCCACGCtttaaacagcctccactccaaCAAACAGTTTCAAGGCCAGTTCGAGTAGAAACTGTCGCTGTGACGTGCCATTCAGACTACATGGAGATAGTCGTGAAGGCTGATCTGTTTAAACTCGGTAATCTAATTGACGTGGATGACCTGCGACTTGGAGTTGAACAGTACCAAGACCAAGAGCCGTGTAGGGCTACAGCTTCAGCAGCCGGAGATGAGTACAGAATATTTGCAGCACTTTCGGACTGTGGAACCAAGCACatgCTGAACGAAGACTCATTGATCTACGCAAACCTCCTCAGATATACACCCAGAACCACACCAGATGACGTTATTCGAATGGCTGGTGCTGTAATCCCAATTGAGTGTCATTATGAAAGGAAGTACAGTTTGGACAGCTCTTCTCTCCAGCCGACCTGGATCCCTTTCACCGCCACAGTGTCTGCTGAAGACACCCTGCAGTTCTCATTGAAGCTTATGACAAGTGACTGGCTCTATGAGCGGGGTTCTGGAGTCTACTTCCTGGGTGATCCCATCAACATTGAGGCGTCTGTCAGGGTTGCTCACCACACCAGGTTCAGGGTCTTTGTTAGCAGCTGCGTGGCCACACTAGACCCTGATAGCAACTCTGTTCCCAGATATGTCTTCATTGAGAGTGATGGGTGCTTGTTGGATTCCCAGCTGCCTGGTTCCCGCTCTGGTTTCATGCGTAGAACCCAGGACAACAAGCTCGGGTTCCACATTGATGCCTTTAGGTTCTACCAGGAGGACAGGGCAGAGCTGTACATCACCTGCCATCTTATGGCAGTCCCTGTCATGGACCATGCAGAGCCTAGCAACAAGGCATGCTCCTTCATTGATGGCAGATGGAGGTCTGCTGATGAGAATGATTTGCTATGTGGTCATTGTTCAAGCCTGAGTAGACAGAAGGGGGTTGATCAAGCTCCAGTACAACGTCCCCTCAGTCCAAGACTAGGTGGTAGCCAACTTGAACCTCGTGTCTACCGCAACAAACCCCCAGCCTCTGGTGACAATTGGAGTATTGGGACGAAGGCCAAGAAAGTATGGGACCAGGATACTACTTTGGGCCCCATGATGGTCCTCCCAAGTAAACAGAAGAGTACACCTCTATCTCCACGGACGAGTGGCGGTATCGATATACCTGGCTTCCCTGCCTCAACAGGGGACAGGAAGCCCGTATCACCTGGCAGTCGTTGGCGTGGCATGGACTTCAAGAGAGgacCTTATTTCGCCCAATCCCAAAATGAGGTTAGTCCCTTGGGCCCAAGGGTTGGACCCAAGAACAAGCACGGTCTCGTTAGCTCTGAAACATATGATGGCTTCATCAGGCAGAAAGAACTAATCGCCCAACAAGAGCTGGAGGCCACTCCAGACCCTGAGTTGATTCCTACACCTGAGCCCATTGGAGACCTTGAGGTTACCACAGAGAAAGAGGGTCTGGATGAAGAGGAGGCTCAGTATGAGATTGGAACCTATTGAAAGGCACACAAGGAGGATGACCCTACAACAAAGTGACATAAGCACCACATCTGCTCCTGGCGACGTCAACCAGTGAAGGGACTACCACAACACTGAGACGATATCTCAAGAGATGCCTGTTAATCtctttgaaaaataaatgatttaatgCTA

Function

NR:

description
zona pellucida sperm-binding protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983622.1 False 2008 mRNA 0.49 11 58406785 58411255
XM_036983623.1 False 1994 mRNA 0.49 11 58406785 58411255
XM_036983624.1 True 1876 mRNA 0.49 11 58406785 58411255

Neighbor

gene id symbol gene type direction distance location
LOC110527127 NA coding upstream 115740 58289425 ~ 58291045 (+)
LOC110528978 atad3 coding upstream 141289 58254627 ~ 58265496 (+)
LOC110528060 LOC106583103 coding upstream 173331 58206944 ~ 58233454 (+)
LOC110528059 LOC106583104 coding upstream 206529 58195725 ~ 58200256 (+)
LOC118965357 NA coding upstream 308245 58075751 ~ 58098540 (+)
LOC110528073 LOC106583096 coding downstream 58857 58470112 ~ 58500215 (+)
LOC110528980 LOC106583093 coding downstream 90943 58502198 ~ 58589001 (+)
nuak2 LOC106583089 coding downstream 228790 58640045 ~ 58655578 (+)
LOC110528982 NA coding downstream 254287 58665542 ~ 58668251 (+)
LOC110528081 LOC106583088 coding downstream 259808 58671063 ~ 58677554 (+)
G628255 NA non-coding upstream 42721 58297788 ~ 58364064 (+)
G628240 NA non-coding upstream 135740 58270805 ~ 58271045 (+)
G628224 NA non-coding upstream 164534 58240412 ~ 58242251 (+)
G628218 NA non-coding upstream 201564 58205001 ~ 58205221 (+)
G628344 NA non-coding downstream 32669 58443924 ~ 58448516 (+)
G628351 LOC106583097 non-coding downstream 41725 58452980 ~ 58456770 (+)
G628432 NA non-coding downstream 155320 58566575 ~ 58567078 (+)
G628371 NA non-coding downstream 178843 58590098 ~ 58590347 (+)
LOC110528055 LOC106583107 other upstream 414913 57917801 ~ 58055214 (+)
G627035 NA other upstream 810734 57542882 ~ 57596051 (+)
snrpe ruxe other upstream 1083764 57319669 ~ 57323047 (+)
G626417 NA other upstream 1921481 56482394 ~ 56485304 (+)
G626004 NA other upstream 2327856 56071054 ~ 56078929 (+)
G628468 LOC106583084 other downstream 297040 58708295 ~ 58713584 (+)
LOC110528095 LOC106565671 other downstream 607090 58969726 ~ 59022859 (+)
LOC110528099 LOC106583069 other downstream 657415 59068637 ~ 59084729 (+)
G629678 NA other downstream 1273076 59684331 ~ 59684763 (+)

Expression


Co-expression Network