LOC110528069 (LOC106583062)


Basic Information

Item Value
gene id LOC110528069
gene name LOC106583062
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58425680 ~ 58437154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609864.2
gtaccggcagcaccctgtatatattgttattttttactgctgctctttaattacttgttactttttatCTCTTAGTCTTATCCGTATTTTTGGAAACTGctctgttggttaggggcttgtttcactgtaaggtctactacacctgtcgtattcggcgcatgtgactgataaaatgtgattttattaaaattggatttgatttgatttgagaagtgTTCGGATTTGAAAACAAGTTACAGAATTGTGCATCTCTTTACATTGGTTACCTTTCAATCCCCAGTCCTAATCTCACCTATTTAAATGTACTAACACCATAGTGTTTCAGATTTTCCCTCAAGTGCAGAGGTTAAGGCTGTGCGTGTTATAATTCTAACTGTGGACCATAGATTTGAGGGTTTTGGCCATGTTTGCATCTTCACTACTCTCTGCCTACAGCAGTCACAATGGACATGTTGTTCTCTAATAGAAACCCTTGGCTAGTAAGTAACATACAGATCAAACACGCAGAGAGGACTTTCCCCCCATTTTAACCAATACTAAACGGCAGGCATTAAAACTACAAAAAGTATTGTAATGTAAATGAATGTAAATTCCCACTCCTTTTTCTCCACCAGCTAAGTGCTTTATTATCTGAGTTTGAGATCATATGGACAATGTTCCTGTTTCTACCTTTATGAAGGTTAACTCTCATCTGATAATTCCATCACTGAGTGATTTTGACCTATAAAGCCACTAAAATATACATCTTCCCAATGAGATGTCATGGCAACCCAGAGTGGTGTGTTGTCGATAGATGGAGTTGGTTAGAGTGACTAAAAGCCTGAGGAAGAAggagttcagagagagagagcgagtacaGCTTGAGCTCGTCCATTAGTGCagctctctggtctgtctgttggtagAGCTCAATAGAGTTTAAAATACAGATAGTGAAGGGGATCAGTGGGGTGTCTGAGGTCAGGGACAGCCAGAGGTTACATTGACCAGAGAGATCTATTCCTGGCTGATATTAAGTTACAGTAACTTATGGCTGCTTTGCATTACAAGAAAAAGGAATGATTAAACACCGGTGACTGTGTGTTTTGACTTGAAACTGTTCAAACCTTTCAATTGACAAATAAGCATGATTTGGTAACGAACAAAAAAGACCAACCATGTTTGAAACCATAACCAAACAGACCAGCAGATGTCAGTATGACTGCATTGAGAAGTTGTCCTGACTATCAGTGGGAGAGGACTACACAGGGTGGTTTTTCCAGTAAAAGGTCctgcaccagagagagagagaatactccAGGGAGAGTTTTCTATTCATCATTTGTCAACCATGTCATACCATCAGTTTAACCTATTCCCCAGCTGGACCCGGCCCAGTCCTACAGACAGCAAGGGAAGTGGAGAGATTGtggagagagtgacagtgtgtgtgtgtgtgtttgtttttttgtttgggaGGGACTGTGGTATCGGCTACTGTGAGACATTAGAGGGGGTGAGCGGGGTATGGTCTCCGTAATCTGTCACATGGGGATAGCCCAACCCAGACCTCTCTCATCAGAGAGGTGCGTAGGACAGCCTCATGTCTGGCTGATAGAACCTACAGGGATTATTAATCAAGCCCTCCATGTCCCATCTGTAGGTTAACAGTACCAGAGCCTGTACAGGTAACACTGCCAACAAGCAGCCTATGTCCAAGAGATGGGTGAGTGCTGCTTTGCCTGGCTTTGGTCTTCTGATGTTGCATCATTGAGGGATTTGTGCTTATATGATGGCGCTGTTACCAAGGCTTTTGGTAAACAAGGATAATTAACATAGGGATGCAATAATGCATTACATGAGAGTAAGTTTATGATGCTCCAAGTAAACTTGgataaaattatttttttttaagtaaaaaaaaaaaaagttagatGAGCTTCCAAAGTAAGGTCAAACGTTGGGAAAATCAGATTCAGCTAAAAGAGAAGAGGACATCATTTAAACAGGCAAATAGTAATAGGGTTTATGGTATGGTCTGCTCATCCCGTTATCTCATTTTCACTCCACCGCTTGCATGTGAAGTCACTAATGTTGAAGAGGACAGTGCGCCGTGTCCAATTGTGCTGAGGTGGActctctcaaactctctctctctctctctctctctctctctctctctctctctctctctctctctctcaaacactaaCATAGTACACATACTCACAGCATGCGCTCTGCGCACCGCTCTGATCTATACACACTCGAACGCAGCACACAAGCATCGCTGTGCTACTGTCTTGGAAAAGGCAATAGGTGCGCATCCTATGAAGcgctgttttgtttgtttttactgtTCTCAGCAAACGAGGAAATATCATCTTATTCTGACATACTCTGGAGTTTGGAAGCACCTGCTCCTGTTCTGGGGTCAACAATTTCAAAGGAGACTTCTGAGGCATAGCGACAGAGACACCAGAGCGAGGATGTGTGGGGTGGACGTGGACCTGGATGAGGGGGGCTCAGGTGACGAGGAGAAGGAGCAGGAGTTCtgggtgggggagggggtgaaGATGCTGCCCCCTCCCCTGGCCCACAGTGAGGGCAGCGCGTGGGGAAGCCGCCGGGGCAGGTGTGGCTGTGTGACGTGCGGGGCGGGGCTGCTGTTGTGGAACGTGGGCGTGGTCCTGGTGTGTGTCCTGGTCCTGATGGCCGTGTTCACCCTGGTCCTGCTGCCCGCCTCGCTGCTGCTCTACGTCGGCTTCCTCTGCCACTCACGGGTCCTAGACTCCCACTCTCCTTTCTGCCGTTACCTCGACGACAACAGTTGCTCCGCCCTTATTATCCTGGGCTTCGTGATGATGTCACCGCTGGTGGTGGTCGCGGCAGCCATCTTCTGTGGGCTGCTCCGGAGGCTGCGGCTCCTCCTGCTGTTTCAGCCAATTACACGCGCCTGGTACCGTGGACCGGGCTTGGACTGGGGAGGCGACGTCCTTGCTTGGGTCTGATTGGACCAACACTCTAATAAACCAGTTGTCTAAAAGTTTAATAGGTCAACGGTCAAGAGAGAATCCAGTCCTGGAGAATCACTGTGTCACCTAATGTATTTAGTGTCCCATTAAACTGTAGTGAATGTCATACAATCAAATGGATATAACGGGAACCAGTACAATTATTTAAAAACAAAGCTTGACATGTTAACAAGGCAGTGGTTAGGGGACTATTGCTAGTCAGAGAGGAGGCAGTGGAGGTAATGGTGGGATACACTAGCAGCTGTTCTCTGTGAATTTGTATTggttatgtatatttatatttttctgtTAACATATAGTTGTGAACATGATGTAGCAGAGAAACGAAACAGTATTGCATAAACTGTCACTCAAATGTCTAGAATGGAAGGAAAATCTGTTTACAATCTTACTTCATTTGACAGATGTTGTTCATTCTATTGATTTCATTATTTTCACCATCTGGGTTAAAGGGCAATTCTGCCACTTTTCAAGCTCATATTCATTATCTTCAGCACCAAACCAGTATCTAAATCAAATAGAATtgtattggttgcatacacatatttatcagatgtcaTTGCGCGTGTATCAAAAAGATCCAACAGTGCTGTAatagtgtgagtgtgtctgaataatgatgagtgagaaagttacacgcacaaatatcatacaccTCAAAAATGATAACTTCCCCTGTTATAGTAtttgtgagaggttagcatgtctcgggggtatgatatttgtgagtctgtcactttctcactcatcattattcagacacactctctcagacacacacttTAAGTATTAATGGTGATAAGAGGGAGGGTTCCAGTACAGTGGGTCTGCAGTGGCATGATTCACTCTGCCTGGAATAATGTTTGATAGTCATCTTCAGACTCCTCATTAAACTTCAAACTCTCCAACTTTAGATGTACTGACAAGTACATGCACTTATTCATTTCCCCCTGATGTGGCCCAATTAACTGGGGTTTAATGTGACCAATTTTAACACTGAGTAGCTTAATAGACTGTACTCTTTTTTTTACACTCAGGGCtgttactgtaacacacactgTTAAAATAAAGTGCTTTGTAA
>TU715047
GTGTGACGTGCGGGGCGGGGCTGCTGTTGTGGAACGTGGGCGTGGTCCTGGTGTGTGTCCTGGTCCTGATGGCCGTGTTCACCCTGGTCCTGCTGCCCGCCTCGCTGCTGCTCTACGTCGGCTTCCTCTGCCACTCACGGGTCCTAGACTCCCACTCTCCTTTCTGCCGTTACCTCGACGACAACAGTTGCTCCGCCCTTATTATCCTGGGCTTCGTGATGATGTCACCGCTGGTGGTGGTCGCGGCAGCCATCTTCTGTGGGCTGCTCCGGAGGCTGCGGCTCCTCCTGCTGTTTCAGCCAATTACACGCGCCTGGTACCGTGGACCGGGCTTGGACTGGGGAGGCGACGTCCTTGCTTGGGTCTGATTGGACCAACACTCTAATAAACCAGTTGTCTAAAAGTTTAATAGGTCAACGGTCAAGAGAGAATCCAGTCCTGGAGAATCACTGTGTCACCTAATGTATTTAGTGTCCCATTAAACTGTAGTGAATGTCATACAATCAAATGGATATAACGGGAACCAGTACAATTATTTAAAAACAAAGCTTGACATGTTAACAAGGCAGTGGTTAGGGGACTATTGCTAGTCAGAGAGGAGGCAGTGGAGGTAATGGTGGGATACACTAGCAGCTGTTCTCTGTGAATTTGTATTggttatgtatatttatatttttctgtTAACATATAGTTGTGAACATGATGTAGCAGAGAAACGAAACAGTATTGCATAAACTGTCACTCAAATGTCTAGAATGGAAGGAAAATCTGTTTACAATCTTACTTCATTTGACAGATGTTGTTCATTCTATTGATTTCATTATTTTCACCATCTGGGTTAAAGGGCAATTCTGCCACTTTTCAAGCTCATATTCATTATCTTCAGCACCAAACCAGTATCTAAATCAAATAGAATtgtattggttgcatacacatatttatcagatgtcaTTGCGCGTGTATCAAAAAGATCCAACA
>TU715046
ACACACTCGAACGCAGCACACAAGCATCGCTGTGCTACTGTCTTGGAAAAGGCAATAGGTGCGCATCCTATGAAGcgctgttttgtttgtttttactgtTCTCAGCAAACGAGGAAATATCATCTTATTCTGACATACTCTGGAGTTTGGAAGCACCTGCTCCTGTTCTGGGGTCAACAATTTCAAAGGAGACTTCTGAGGCATAGCGACAGAGACACCAGAGCGAGGATGTGTGGGGTGGACGTGGACCTGGATGAGGGGGGCTCAGGTG

Function

NR:

description
transmembrane protein 88B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609864.2 False 4095 mRNA 0.44 3 58425680 58437154
TU715047 False 978 TUCP 0.46 2 58426175 58429371
TU715046 True 271 lncRNA 0.50 2 58429483 58434914
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Neighbor

gene id symbol gene type direction distance location
LOC110528067 LOC106583063 coding downstream 80477 58322868 ~ 58345203 (-)
LOC110527128 LOC106583056 coding downstream 112162 58310330 ~ 58313518 (-)
LOC110528979 LOC106583057 coding downstream 132684 58291286 ~ 58292996 (-)
LOC110528066 LOC106583064 coding downstream 139301 58283744 ~ 58286379 (-)
LOC110528064 ssu72 coding downstream 143067 58277852 ~ 58282613 (-)
LOC110528070 LOC106583098 coding upstream 3086 58440240 ~ 58452227 (-)
LOC110528071 LOC106583097 coding upstream 15820 58452974 ~ 58456858 (-)
LOC110528074 LOC106583092 coding upstream 153912 58591066 ~ 58619101 (-)
LOC110528080 NA coding upstream 190181 58627335 ~ 58629263 (-)
ccnd3 LOC106583090 coding upstream 218655 58655809 ~ 58662211 (-)
G628791 NA non-coding downstream 150651 58274787 ~ 58275029 (-)
G628790 NA non-coding downstream 151393 58274060 ~ 58274287 (-)
G628787 NA non-coding downstream 153937 58271364 ~ 58271743 (-)
G628768 NA non-coding downstream 155907 58244787 ~ 58269773 (-)
G628765 NA non-coding downstream 156832 58225857 ~ 58268848 (-)
G628878 NA non-coding upstream 33031 58470185 ~ 58496244 (-)
G628966 NA non-coding upstream 125249 58562403 ~ 58563031 (-)
G628969 NA non-coding upstream 129414 58566568 ~ 58567862 (-)
G628988 NA non-coding upstream 149918 58587072 ~ 58588990 (-)
G628714 NA other downstream 307558 58117190 ~ 58118122 (-)
G628575 LOC106579815 other downstream 552349 57872050 ~ 57873331 (-)
LOC110528040 NA other downstream 1367110 57052191 ~ 57059527 (-)
vamp3 vamp3 other downstream 1556229 56853567 ~ 56869607 (-)
G627323 NA other downstream 1573379 56846962 ~ 56852301 (-)
LOC110528083 LOC106583085 other upstream 254663 58691817 ~ 58695856 (-)
sfrs3 sfrs3 other upstream 270418 58707572 ~ 58713630 (-)
G630132 NA other upstream 1310296 59747450 ~ 59752591 (-)
G630227 NA other upstream 1478825 59915979 ~ 59917551 (-)
G630747 NA other upstream 1645892 60083046 ~ 60083857 (-)
LOC110528069 LOC106583062 other downstream 112 58425680 ~ 58437154 (-)

Expression

LOC110528069(LOC106583062) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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LOC110528069(LOC106583062) Expression in each Bioproject

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LOC110528069(LOC106583062) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network