LOC110528073 (LOC106583096)


Basic Information

Item Value
gene id LOC110528073
gene name LOC106583096
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58470112 ~ 58500215 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609869.2
AGTGACGAGCCCCCTTCCTGTACCCGGCTGAGGAAGTTAATTCGCTGACAGGGCTGGGTTCCGTGAGGGAGGCGAAAGAAATATAATTTACATGGTGGggataaaaacaacaacagtatAGAAGAACAAGTTGTGCAAGCACAATAAAACGTACGTGTAAAGCATATTTCCTCTCCGAGATCGTCACTGAGCGCCGCAGACATGAATGACCAGCAGCTGGACTGTGCTCTGGACCTGATGAGGCGTCTTCCTCCCCAGCAGATCGAGAAGAATCTCAGTGACCTCATCGACCTGGTGCCCAGTCTGTGTGAGGACCTACTCTCCTCTGTGGACCAGCCTCTGAAGATTGCCCGGGACAAGGTGGTGGGGAAAGACTACCTGCTCTGTGACTACAACAGAGACGGTGACTCCTACAGATCCCCATGGAGTAATAAGTATGAGCCACCCATCGACGATGGTGCCATGCCATCTGCCCGCCTGCGCAAACTAGAGGTTGAAGCCAACAATGCCTTTGACCAGTATAGAGACCTGTACTTTGAGGGCGGTGtatcatctgtgtatctgtggGACTTGGATCATGGCTTTGCTGGGGTCATCCTCATCAAGAAGGCTGGAGACGGCTCCAAGAAGATCAAAGGCTGCTGGGACTCCATCCATGTGGTGGAGGTGCAGGAGAAGTCCAGCGGACGGACCGCTCACTACAAACTCACCTCCACCGTTATGCTGTGGCTCCAGACGACCAAGACCGGGTCTGGAACCATGAACCTGGGTGGCAGTCTGACAAGACAGaTGGAGAAAGACGAGACAGTTGGAGAGTCTTCCCCACATATTGCCAACATCGGCCGCCTGGTGGAGGATATGGAGAATAAGATTCGCTCCACTCTCAACGAGATCTACTTTGGGAAGACCAAGGACATCGTCAATGGTTTAAGATCTATTGACTCTCTGCCTGATAACCAAAAGTACCGGCAGCTCCAGAAGGAGCTGTCTCAGGTCCTCACCCAGCGCCAGATCTTCATTGACTAGGGCCAGAGGAGTGTTCAGACCCTGGCTGACAAGTCGAAGCAGGAGGCTCTGAAGAACGACCTGATGGAGGCGCTTAAACGCAAACAGCAAAGCTAGAGATGCTATTTTTTTTATTCgattttcctctttctctctctgttccccgcGCAGTATCTCCACCTTACTCAACCATATTTTTTCTGTTTGTACGTCTCTCCTTCCATGCCTGTTTCAGTGCTGCACTCTTGTTCATTTGTGGGAAAAACAAAAAAGAGAATGTTtagcttttttttattttcatgcaTTGTTTTGAGGCATCTCATTCGCTTTCAAGCCATTcacccaccctgtctctctctccgtctctctctctctctgtctctcttatgTTATGAATATTATGATAGTATTCTTAAGGTTAATGATAATCTTACAGTTTTACCGCAATGTTTATAATccctacagctctgtcacagCTGAGTCTGTTTTGAATGAGTGACATCAGCTTCTCTCCTATCCTCTGGTTAGGGGACAGAATCAGATacagactgtactgtagctaggctTGGCTGGGCTAACAAATCGTCATTAATTTCCACCAACATTTTCTTTCTTGTACCCATTATATCAAAGTGTCTGTGCCACCACCTTTCTTGAAATATAACTGTCATTTTTCTGGGTGATGTAATGGCAAACGAATGGGAGAGGGTGGCCCTAGATATTATGTATTGTAAGGATTGGTCTATGGTTTGACCTTCGTCCCACTCTTACCCGCATGCGTTGTGAGTCTGAACGCATTGGATCACGGGATGGAGCTGTAGACCTCTAAAACATGGGGAGGGACTGTTAGGTTCACTGTGTATAACCATGTCATTAAGTCCCCCTCTTACACTGTGTATAACGTGATGATTTGGAtacctcggtctctctctcggtctctctctcggtctctctttcaCCTGGTCTATGTTGGGGGCACAATTTTGTCTTTTTGCGTCTTGAAGGAAGCTTTTGACCTTTTCTGTTTTGGGGGGAatctttttttgttgtattttgtttttattttgtaaagcTAATGATTCATATTTTATTAGAGCCTCCAGTAACAATAAAAACAGTAAAACTATTTATTGTAATATTT
>XM_021609870.2
AGTGACGAGCCCCCTTCCTGTACCCGGCTGAGGAAGTTAATTCGCTGACAGGGCTGGGTTCCGTGAGGGAGGCGAAAGAAATATAATTTACATGGTGGggataaaaacaacaacagtatAGAAGAACAAGTTGTGCAAGCACAATAAAACGTACGTGTAAAGCATATTTCCTCTCCGAGATCGTCACTGAGCGCCGCAGACATGAATGACCAGCAGCTGGACTGTGCTCTGGACCTGATGAGGCGTCTTCCTCCCCAGCAGATCGAGAAGAATCTCAGTGACCTCATCGACCTGGTGCCCAGTCTGTGTGAGGACCTACTCTCCTCTGTGGACCAGCCTCTGAAGATTGCCCGGGACAAGGTGGTGGGGAAAGACTACCTGCTCTGTGACTACAACAGAGACGGTGACTCCTACAGATCCCCATGGAGTAATAAGTATGAGCCACCCATCGACGATGGTGCCATGCCATCTGCCCGCCTGCGCAAACTAGAGGTTGAAGCCAACAATGCCTTTGACCAGTATAGAGACCTGTACTTTGAGGGCGGTGtatcatctgtgtatctgtggGACTTGGATCATGGCTTTGCTGGGGTCATCCTCATCAAGAAGGCTGGAGACGGCTCCAAGAAGATCAAAGGCTGCTGGGACTCCATCCATGTGGTGGAGGTGCAGGAGAAGTCCAGCGGACGGACCGCTCACTACAAACTCACCTCCACCGTTATGCTGTGGCTCCAGACGACCAAGACCGGGTCTGGAACCATGAACCTGGGTGGCAGTCTGACAAGACAGaTGGAGAAAGACGAGACAGTTGGAGAGTCTTCCCCACATATTGCCAACATCGGCCGCCTGGTGGAGGATATGGAGAATAAGATTCGCTCCACTCTCAACGAGATCTACTTTGGGAAGACCAAGGACATCGTCAATGGTTTAAGGAGTGTTCAGACCCTGGCTGACAAGTCGAAGCAGGAGGCTCTGAAGAACGACCTGATGGAGGCGCTTAAACGCAAACAGCAAAGCTAGAGATGCTATTTTTTTTATTCgattttcctctttctctctctgttccccgcGCAGTATCTCCACCTTACTCAACCATATTTTTTCTGTTTGTACGTCTCTCCTTCCATGCCTGTTTCAGTGCTGCACTCTTGTTCATTTGTGGGAAAAACAAAAAAGAGAATGTTtagcttttttttattttcatgcaTTGTTTTGAGGCATCTCATTCGCTTTCAAGCCATTcacccaccctgtctctctctccgtctctctctctctctgtctctcttatgTTATGAATATTATGATAGTATTCTTAAGGTTAATGATAATCTTACAGTTTTACCGCAATGTTTATAATccctacagctctgtcacagCTGAGTCTGTTTTGAATGAGTGACATCAGCTTCTCTCCTATCCTCTGGTTAGGGGACAGAATCAGATacagactgtactgtagctaggctTGGCTGGGCTAACAAATCGTCATTAATTTCCACCAACATTTTCTTTCTTGTACCCATTATATCAAAGTGTCTGTGCCACCACCTTTCTTGAAATATAACTGTCATTTTTCTGGGTGATGTAATGGCAAACGAATGGGAGAGGGTGGCCCTAGATATTATGTATTGTAAGGATTGGTCTATGGTTTGACCTTCGTCCCACTCTTACCCGCATGCGTTGTGAGTCTGAACGCATTGGATCACGGGATGGAGCTGTAGACCTCTAAAACATGGGGAGGGACTGTTAGGTTCACTGTGTATAACCATGTCATTAAGTCCCCCTCTTACACTGTGTATAACGTGATGATTTGGAtacctcggtctctctctcggtctctctctcggtctctctttcaCCTGGTCTATGTTGGGGGCACAATTTTGTCTTTTTGCGTCTTGAAGGAAGCTTTTGACCTTTTCTGTTTTGGGGGGAatctttttttgttgtattttgtttttattttgtaaagcTAATGATTCATATTTTATTAGAGCCTCCAGTAACAATAAAAACAGTAAAACTATTTATTGTAATATTT

Function

NR:

description
PREDICTED: F-actin-capping protein subunit beta isoform X2

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0008290 F-actin capping protein complex cellular_component
GO:0071203 WASH complex cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K10365 CAPZB; capping protein (actin filament) muscle Z-line, beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609869.2 False 2146 mRNA 0.46 9 58470112 58500215
XM_021609870.2 True 2044 mRNA 0.46 8 58470112 58500215

Neighbor

gene id symbol gene type direction distance location
LOC110528068 LOC106595335 coding upstream 58857 58406785 ~ 58411255 (+)
LOC110527127 NA coding upstream 179067 58289425 ~ 58291045 (+)
LOC110528978 atad3 coding upstream 204616 58254627 ~ 58265496 (+)
LOC110528060 LOC106583103 coding upstream 236658 58206944 ~ 58233454 (+)
LOC110528059 LOC106583104 coding upstream 269856 58195725 ~ 58200256 (+)
LOC110528980 LOC106583093 coding downstream 1983 58502198 ~ 58589001 (+)
nuak2 LOC106583089 coding downstream 139830 58640045 ~ 58655578 (+)
LOC110528982 NA coding downstream 165327 58665542 ~ 58668251 (+)
LOC110528081 LOC106583088 coding downstream 170848 58671063 ~ 58677554 (+)
LOC110528084 LOC106583083 coding downstream 227918 58728133 ~ 58737629 (+)
G628351 LOC106583097 non-coding upstream 13342 58452980 ~ 58456770 (+)
G628344 NA non-coding upstream 21596 58443924 ~ 58448516 (+)
G628255 NA non-coding upstream 106048 58297788 ~ 58364064 (+)
G628240 NA non-coding upstream 199067 58270805 ~ 58271045 (+)
G628432 NA non-coding downstream 66360 58566575 ~ 58567078 (+)
G628371 NA non-coding downstream 89883 58590098 ~ 58590347 (+)
G628451 NA non-coding downstream 109896 58610111 ~ 58610368 (+)
G628457 NA non-coding downstream 119752 58619967 ~ 58620226 (+)
LOC110528055 LOC106583107 other upstream 478240 57917801 ~ 58055214 (+)
G627035 NA other upstream 874061 57542882 ~ 57596051 (+)
snrpe ruxe other upstream 1147091 57319669 ~ 57323047 (+)
G626417 NA other upstream 1984808 56482394 ~ 56485304 (+)
G626004 NA other upstream 2391183 56071054 ~ 56078929 (+)
G628468 LOC106583084 other downstream 208080 58708295 ~ 58713584 (+)
LOC110528095 LOC106565671 other downstream 518130 58969726 ~ 59022859 (+)
LOC110528099 LOC106583069 other downstream 568455 59068637 ~ 59084729 (+)
G629678 NA other downstream 1184116 59684331 ~ 59684763 (+)

Expression


Co-expression Network