Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110528980 |
| gene name | LOC106583093 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 58502198 ~ 58589001 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036983630.1 | False | 9038 | mRNA | 0.56 | 32 | 58502198 | 58585280 |
| XM_036983628.1 | False | 11303 | mRNA | 0.53 | 34 | 58502199 | 58589001 |
| XM_036983626.1 | False | 11305 | mRNA | 0.53 | 34 | 58502200 | 58589001 |
| XM_036983627.1 | False | 11302 | mRNA | 0.53 | 34 | 58502200 | 58589001 |
| XM_036983629.1 | False | 11254 | mRNA | 0.53 | 34 | 58502200 | 58589001 |
| TU714456 | False | 393 | lncRNA | 0.46 | 1 | 58502255 | 58502647 |
| TU714457 | True | 528 | TUCP | 0.54 | 1 | 58503550 | 58504077 |
58,480,000
58,490,000
58,500,000
58,510,000
58,520,000
58,530,000
58,540,000
58,550,000
58,560,000
58,570,000
58,580,000
58,590,000
58,600,000
58,610,000
58,620,000
58,630,000
58,640,000
58,650,000
NC_048571.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110528073 | LOC106583096 | coding | upstream | 1983 | 58470112 ~ 58500215 (+) |
| LOC110528068 | LOC106595335 | coding | upstream | 90943 | 58406785 ~ 58411255 (+) |
| LOC110527127 | NA | coding | upstream | 211153 | 58289425 ~ 58291045 (+) |
| LOC110528978 | atad3 | coding | upstream | 236702 | 58254627 ~ 58265496 (+) |
| LOC110528060 | LOC106583103 | coding | upstream | 268744 | 58206944 ~ 58233454 (+) |
| nuak2 | LOC106583089 | coding | downstream | 51044 | 58640045 ~ 58655578 (+) |
| LOC110528982 | NA | coding | downstream | 76541 | 58665542 ~ 58668251 (+) |
| LOC110528081 | LOC106583088 | coding | downstream | 82062 | 58671063 ~ 58677554 (+) |
| LOC110528084 | LOC106583083 | coding | downstream | 139132 | 58728133 ~ 58737629 (+) |
| LOC110528086 | LOC106583082 | coding | downstream | 148858 | 58737859 ~ 58800122 (+) |
| G628351 | LOC106583097 | non-coding | upstream | 45428 | 58452980 ~ 58456770 (+) |
| G628344 | NA | non-coding | upstream | 53682 | 58443924 ~ 58448516 (+) |
| G628255 | NA | non-coding | upstream | 138134 | 58297788 ~ 58364064 (+) |
| G628240 | NA | non-coding | upstream | 231153 | 58270805 ~ 58271045 (+) |
| G628371 | NA | non-coding | downstream | 1097 | 58590098 ~ 58590347 (+) |
| G628451 | NA | non-coding | downstream | 21110 | 58610111 ~ 58610368 (+) |
| G628457 | NA | non-coding | downstream | 30966 | 58619967 ~ 58620226 (+) |
| G628458 | NA | non-coding | downstream | 33607 | 58622608 ~ 58623335 (+) |
| G628476 | NA | non-coding | downstream | 123896 | 58712897 ~ 58718648 (+) |
| LOC110528055 | LOC106583107 | other | upstream | 510326 | 57917801 ~ 58055214 (+) |
| G627035 | NA | other | upstream | 906147 | 57542882 ~ 57596051 (+) |
| snrpe | ruxe | other | upstream | 1179177 | 57319669 ~ 57323047 (+) |
| G626417 | NA | other | upstream | 2016894 | 56482394 ~ 56485304 (+) |
| G626004 | NA | other | upstream | 2423269 | 56071054 ~ 56078929 (+) |
| G628468 | LOC106583084 | other | downstream | 119294 | 58708295 ~ 58713584 (+) |
| LOC110528095 | LOC106565671 | other | downstream | 429344 | 58969726 ~ 59022859 (+) |
| LOC110528099 | LOC106583069 | other | downstream | 479669 | 59068637 ~ 59084729 (+) |
| G629678 | NA | other | downstream | 1095330 | 59684331 ~ 59684763 (+) |
| G629679 | NA | other | downstream | 1095871 | 59684872 ~ 59685187 (+) |
| G628432 | NA | non-coding | downstream | 63928 | 58566575 ~ 58567078 (+) |
| LOC110528980 | LOC106583093 | other | downstream | 903 | 58502198 ~ 58589001 (+) |
